Miyakogusa Predicted Gene

Lj2g3v3247910.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3247910.2 tr|Q9FM80|Q9FM80_ARATH Mitochondrial
transcription termination factor family protein OS=Arabidopsis
,42.35,2e-17,seg,NULL,CUFF.39927.2
         (199 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g094610.1 | transcription termination factor family protei...   189   1e-48

>Medtr5g094610.1 | transcription termination factor family protein |
           HC | chr5:41344877-41348219 | 20130731
          Length = 503

 Score =  189 bits (481), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 105/216 (48%), Positives = 128/216 (59%), Gaps = 18/216 (8%)

Query: 1   MAATIHSLYPYNPFFHI-----XXXXXXXXXXXXXFRRGSKLVVLAAHSNPKILKTNRMS 55
           MA T  SLYPYNPF  +                  F +  K  VL+AHSNPKILKTNR S
Sbjct: 1   MATTFLSLYPYNPFNILPFPSSNHASASCSSSSSSFLKRRKFTVLSAHSNPKILKTNRKS 60

Query: 56  KYGRALSMYXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------FAEPADLDVNN 102
            YG+ LS Y                                        FAEP DL+  +
Sbjct: 61  TYGKFLSPYDSDDEIEEMDFEDDEDEDEDEDEDDDDDDDDDDEDDDDDGFAEPTDLNAKD 120

Query: 103 KRRKSRTVAERNREREKERGLRSFDDGQSNRMPKSERLASFQQNDSGKFGRNSKEKKYPR 162
           KR KS+TV +R +E+EKE+G+RS ++GQS R+PKS+R+AS Q+N+S KF RNS EKKYP 
Sbjct: 121 KRLKSKTVPDRQQEKEKEKGVRSLNNGQSKRLPKSQRIASLQENNSAKFRRNSMEKKYPE 180

Query: 163 LSEEIVMDVKWLPLLDYLSTFEIKESHFLQMYERHM 198
           LSEEI++D KWLPLLDYLSTF IKES F+Q+YERHM
Sbjct: 181 LSEEILLDEKWLPLLDYLSTFGIKESQFIQIYERHM 216