Miyakogusa Predicted Gene
- Lj2g3v3234600.3
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v3234600.3 Non Characterized Hit- tr|F6HZN8|F6HZN8_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,45.57,0.0000000000003,RNA-binding domain, RBD,NULL; SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,NULL; RNA recognition motif,CUFF.39940.3
(230 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 389 e-108
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 389 e-108
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 338 3e-93
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 337 6e-93
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 309 2e-84
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 309 2e-84
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 309 2e-84
Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 243 1e-64
Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 203 1e-52
Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 203 1e-52
Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 155 4e-38
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 141 5e-34
Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 121 4e-28
Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 104 8e-23
Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 103 1e-22
Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 103 1e-22
Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 103 1e-22
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 64 1e-10
Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |... 62 3e-10
Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 7e-10
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 3e-09
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 3e-09
Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 4e-09
Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 4e-09
Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 5e-09
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 2e-08
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 2e-08
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 2e-08
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 2e-08
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 3e-08
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 3e-08
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 56 4e-08
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch... 55 5e-08
Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 7e-08
Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 7e-08
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 54 8e-08
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 1e-07
Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 1e-07
Medtr1g048080.1 | pentatricopeptide (PPR) repeat protein | HC | ... 54 2e-07
Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC | ch... 53 2e-07
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 2e-07
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 53 2e-07
Medtr4g124940.1 | nucleolysin TIAR-like protein | HC | chr4:5182... 53 3e-07
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 52 3e-07
Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC | ch... 52 3e-07
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-... 52 4e-07
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch... 52 4e-07
Medtr7g094670.1 | mRNA capping enzyme, putative | LC | chr7:3777... 52 4e-07
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-... 52 4e-07
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-... 52 4e-07
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-... 52 4e-07
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 52 5e-07
Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 6e-07
Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 6e-07
Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 6e-07
Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 8e-07
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 8e-07
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 8e-07
Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 8e-07
Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 8e-07
Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 8e-07
Medtr3g462330.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 1e-06
Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 1e-06
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 51 1e-06
Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 1e-06
Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 1e-06
Medtr3g109090.3 | nucleolysin TIAR-like protein | HC | chr3:5042... 50 1e-06
Medtr3g109090.1 | nucleolysin TIAR-like protein | HC | chr3:5042... 50 2e-06
Medtr3g109090.2 | nucleolysin TIAR-like protein | HC | chr3:5042... 50 2e-06
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 2e-06
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 2e-06
Medtr6g477870.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 2e-06
Medtr4g122650.1 | flowering time control FCA-like protein | HC |... 50 2e-06
Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 2e-06
Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 2e-06
Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 2e-06
Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 2e-06
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 50 2e-06
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 2e-06
Medtr5g023060.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 2e-06
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 2e-06
Medtr8g074790.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 3e-06
Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 3e-06
Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 3e-06
Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 3e-06
Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 3e-06
Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 4e-06
Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 4e-06
Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like pro... 49 4e-06
Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 5e-06
Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |... 49 5e-06
Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |... 49 5e-06
Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |... 49 5e-06
Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |... 49 5e-06
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701... 48 7e-06
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 48 8e-06
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 48 8e-06
Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 48 8e-06
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 389 bits (1000), Expect = e-108, Method: Compositional matrix adjust.
Identities = 191/228 (83%), Positives = 207/228 (90%), Gaps = 3/228 (1%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
MRDRATGRARGFGFVVF+DPAVAERVI+DKHIIDGRTVEAKKAVPRDDQ +NRQ+G V
Sbjct: 38 MRDRATGRARGFGFVVFSDPAVAERVIIDKHIIDGRTVEAKKAVPRDDQQNINRQTGSVQ 97
Query: 61 GSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 120
GSPG GRTKKIFVGGLPSTITESDFK YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE
Sbjct: 98 GSPGPGRTKKIFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 157
Query: 121 EAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPLIGSYNYGLN-RASSYLNSYAQG 179
EAVDRVL+KTFHELNGKMVEVKRAVPKELSPGP RSPLIG NY LN RASSYLN+Y QG
Sbjct: 158 EAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPTRSPLIGYNNYSLNSRASSYLNNYGQG 217
Query: 180 FNMNPVGGLGVRMDGRFNLNPLTSSRGGLTPFGFSGYGMGVNLDSAIA 227
++M+P+GG GVRMDGRF +PLT R G TPFG +GYGMG+NL+S ++
Sbjct: 218 YSMSPIGGFGVRMDGRF--SPLTGGRTGFTPFGNTGYGMGMNLESGLS 263
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 14/103 (13%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+F+GG+ E K YF +G + + V+M D T R RGFGF+ + +RV+
Sbjct: 7 KLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVIID 66
Query: 130 TFHELNGKMVEVKRAVPK-------------ELSPGPIRSPLI 159
H ++G+ VE K+AVP+ + SPGP R+ I
Sbjct: 67 K-HIIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTKKI 108
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 389 bits (999), Expect = e-108, Method: Compositional matrix adjust.
Identities = 191/228 (83%), Positives = 207/228 (90%), Gaps = 3/228 (1%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
MRDRATGRARGFGFVVF+DPAVAERVI+DKHIIDGRTVEAKKAVPRDDQ +NRQ+G V
Sbjct: 38 MRDRATGRARGFGFVVFSDPAVAERVIIDKHIIDGRTVEAKKAVPRDDQQNINRQTGSVQ 97
Query: 61 GSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 120
GSPG GRTKKIFVGGLPSTITESDFK YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE
Sbjct: 98 GSPGPGRTKKIFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 157
Query: 121 EAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPLIGSYNYGLN-RASSYLNSYAQG 179
EAVDRVL+KTFHELNGKMVEVKRAVPKELSPGP RSPLIG NY LN RASSYLN+Y QG
Sbjct: 158 EAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPTRSPLIGYNNYSLNSRASSYLNNYGQG 217
Query: 180 FNMNPVGGLGVRMDGRFNLNPLTSSRGGLTPFGFSGYGMGVNLDSAIA 227
++M+P+GG GVRMDGRF +PLT R G TPFG +GYGMG+NL+S ++
Sbjct: 218 YSMSPIGGFGVRMDGRF--SPLTGGRTGFTPFGNTGYGMGMNLESGLS 263
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 14/103 (13%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+F+GG+ E K YF +G + + V+M D T R RGFGF+ + +RV+
Sbjct: 7 KLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVIID 66
Query: 130 TFHELNGKMVEVKRAVPK-------------ELSPGPIRSPLI 159
H ++G+ VE K+AVP+ + SPGP R+ I
Sbjct: 67 K-HIIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTKKI 108
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 338 bits (866), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 167/227 (73%), Positives = 191/227 (84%), Gaps = 4/227 (1%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
M+DR TGRARGFGFVVF DPAVA+ V+ +KH IDGR VEAKKAVPRDDQN L+R SG +H
Sbjct: 38 MKDRTTGRARGFGFVVFIDPAVADIVVQEKHNIDGRMVEAKKAVPRDDQNVLSRTSGSIH 97
Query: 61 GSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 120
GSPG GRT+KIFVGGL ST+TESDFK YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE
Sbjct: 98 GSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 157
Query: 121 EAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPLIGSYNYGLNRASSYLNSYAQGF 180
EAVD+VL KTFHELNGKMVEVKRAVPKELSPGP RSPL G YNYGL+R +S+LN + Q +
Sbjct: 158 EAVDQVLLKTFHELNGKMVEVKRAVPKELSPGPARSPLSG-YNYGLSRVNSFLNGFNQSY 216
Query: 181 NMNPVGGLGVRMDGRFNLNPLTSSRGGLTPFGFSGYGMGVNLDSAIA 227
+ + VGG G+R+DGRF +P+ R PFG SGYGMG+N + ++
Sbjct: 217 SPSTVGGYGLRVDGRF--SPVAGGRNAYAPFG-SGYGMGMNFEPGLS 260
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+F+GG+ E + YF +G + + V+M D T R RGFGF+ + + AV ++ +
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVF-IDPAVADIVVQ 65
Query: 130 TFHELNGKMVEVKRAVPKE 148
H ++G+MVE K+AVP++
Sbjct: 66 EKHNIDGRMVEAKKAVPRD 84
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 337 bits (864), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 167/227 (73%), Positives = 191/227 (84%), Gaps = 4/227 (1%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
M+DR TGRARGFGFVVF DPAVA+ V+ +KH IDGR VEAKKAVPRDDQN L+R SG +H
Sbjct: 38 MKDRTTGRARGFGFVVFIDPAVADIVVQEKHNIDGRMVEAKKAVPRDDQNVLSRTSGSIH 97
Query: 61 GSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 120
GSPG GRT+KIFVGGL ST+TESDFK YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE
Sbjct: 98 GSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 157
Query: 121 EAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPLIGSYNYGLNRASSYLNSYAQGF 180
EAVD+VL KTFHELNGKMVEVKRAVPKELSPGP RSPL G YNYGL+R +S+LN + Q +
Sbjct: 158 EAVDQVLLKTFHELNGKMVEVKRAVPKELSPGPARSPLSG-YNYGLSRVNSFLNGFNQSY 216
Query: 181 NMNPVGGLGVRMDGRFNLNPLTSSRGGLTPFGFSGYGMGVNLDSAIA 227
+ + VGG G+R+DGRF +P+ R PFG SGYGMG+N + ++
Sbjct: 217 SPSTVGGYGLRVDGRF--SPVAGGRNAYAPFG-SGYGMGMNFEPGLS 260
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+F+GG+ E + YF +G + + V+M D T R RGFGF+ + + AV ++ +
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVF-IDPAVADIVVQ 65
Query: 130 TFHELNGKMVEVKRAVPKE 148
H ++G+MVE K+AVP++
Sbjct: 66 EKHNIDGRMVEAKKAVPRD 84
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 309 bits (791), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 157/226 (69%), Positives = 183/226 (80%), Gaps = 7/226 (3%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
M+DR TGRARGFGFVVFADP+VAERV+++KH+IDGRTVEAKKAVPRDDQN R + H
Sbjct: 36 MKDRTTGRARGFGFVVFADPSVAERVVMEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSH 95
Query: 61 GSPGTG--RTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYD 118
GSP RTKKIFVGGL ST+TESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYD
Sbjct: 96 GSPAPTPIRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYD 155
Query: 119 SEEAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPLIGSYNYG-LNRASSYLNSYA 177
SEEAV++VL KTFHELNGKMVEVKRAVPK+LSP P R L G ++YG ++R S+ N +A
Sbjct: 156 SEEAVEKVLHKTFHELNGKMVEVKRAVPKDLSPSPSRGQL-GGFSYGTMSRVGSFSNGFA 214
Query: 178 QGFNMNPVGGLGVRMDGRFNLNPLTSSRGGLTPFGFSGYGMGVNLD 223
QG+N + +GG G+R+DGR L+P R G + F S YG G+N +
Sbjct: 215 QGYNPSLIGGHGLRLDGR--LSPANVGRSGYSLFSPS-YGTGLNFE 257
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+F+GG+ E + YF FG + + V+M D T R RGFGF+ + +RV+ +
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 130 TFHELNGKMVEVKRAVPKE 148
H ++G+ VE K+AVP++
Sbjct: 65 K-HVIDGRTVEAKKAVPRD 82
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 309 bits (791), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 157/226 (69%), Positives = 183/226 (80%), Gaps = 7/226 (3%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
M+DR TGRARGFGFVVFADP+VAERV+++KH+IDGRTVEAKKAVPRDDQN R + H
Sbjct: 36 MKDRTTGRARGFGFVVFADPSVAERVVMEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSH 95
Query: 61 GSPGTG--RTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYD 118
GSP RTKKIFVGGL ST+TESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYD
Sbjct: 96 GSPAPTPIRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYD 155
Query: 119 SEEAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPLIGSYNYG-LNRASSYLNSYA 177
SEEAV++VL KTFHELNGKMVEVKRAVPK+LSP P R L G ++YG ++R S+ N +A
Sbjct: 156 SEEAVEKVLHKTFHELNGKMVEVKRAVPKDLSPSPSRGQL-GGFSYGTMSRVGSFSNGFA 214
Query: 178 QGFNMNPVGGLGVRMDGRFNLNPLTSSRGGLTPFGFSGYGMGVNLD 223
QG+N + +GG G+R+DGR L+P R G + F S YG G+N +
Sbjct: 215 QGYNPSLIGGHGLRLDGR--LSPANVGRSGYSLFSPS-YGTGLNFE 257
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+F+GG+ E + YF FG + + V+M D T R RGFGF+ + +RV+ +
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 130 TFHELNGKMVEVKRAVPKE 148
H ++G+ VE K+AVP++
Sbjct: 65 K-HVIDGRTVEAKKAVPRD 82
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 309 bits (791), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 157/226 (69%), Positives = 183/226 (80%), Gaps = 7/226 (3%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
M+DR TGRARGFGFVVFADP+VAERV+++KH+IDGRTVEAKKAVPRDDQN R + H
Sbjct: 36 MKDRTTGRARGFGFVVFADPSVAERVVMEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSH 95
Query: 61 GSPGTG--RTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYD 118
GSP RTKKIFVGGL ST+TESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYD
Sbjct: 96 GSPAPTPIRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYD 155
Query: 119 SEEAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPLIGSYNYG-LNRASSYLNSYA 177
SEEAV++VL KTFHELNGKMVEVKRAVPK+LSP P R L G ++YG ++R S+ N +A
Sbjct: 156 SEEAVEKVLHKTFHELNGKMVEVKRAVPKDLSPSPSRGQL-GGFSYGTMSRVGSFSNGFA 214
Query: 178 QGFNMNPVGGLGVRMDGRFNLNPLTSSRGGLTPFGFSGYGMGVNLD 223
QG+N + +GG G+R+DGR L+P R G + F S YG G+N +
Sbjct: 215 QGYNPSLIGGHGLRLDGR--LSPANVGRSGYSLFSPS-YGTGLNFE 257
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+F+GG+ E + YF FG + + V+M D T R RGFGF+ + +RV+ +
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 130 TFHELNGKMVEVKRAVPKE 148
H ++G+ VE K+AVP++
Sbjct: 65 K-HVIDGRTVEAKKAVPRD 82
>Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9464335-9461370 | 20130731
Length = 411
Score = 243 bits (619), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 127/189 (67%), Positives = 147/189 (77%), Gaps = 7/189 (3%)
Query: 38 VEAKKAVPRDDQNTLNRQSGGVHGSPGTG--RTKKIFVGGLPSTITESDFKNYFDQFGTI 95
VEAKKAVPRDDQN R + HGSP RTKKIFVGGL ST+TESDFKNYFDQFGTI
Sbjct: 3 VEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDFKNYFDQFGTI 62
Query: 96 TDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIR 155
TDVVVMYDHNTQRPRGFGFITYDSEEAV++VL KTFHELNGKMVEVKRAVPK+LSP P R
Sbjct: 63 TDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKRAVPKDLSPSPSR 122
Query: 156 SPLIGSYNYG-LNRASSYLNSYAQGFNMNPVGGLGVRMDGRFNLNPLTSSRGGLTPFGFS 214
L G ++YG ++R S+ N +AQG+N + +GG G+R+DGR L+P R G + F S
Sbjct: 123 GQL-GGFSYGTMSRVGSFSNGFAQGYNPSLIGGHGLRLDGR--LSPANVGRSGYSLFSPS 179
Query: 215 GYGMGVNLD 223
YG G+N +
Sbjct: 180 -YGTGLNFE 187
>Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 203 bits (516), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 117/222 (52%), Positives = 146/222 (65%), Gaps = 13/222 (5%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGV- 59
MR++ TG+ RGFGFVVF+DP+V +RV+ DKH+IDGRTV+AK+A R+DQ G
Sbjct: 38 MREKNTGKPRGFGFVVFSDPSVLDRVLEDKHVIDGRTVDAKRAFSREDQQISVSSRSGNS 97
Query: 60 -----HGSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGF 114
G+ G RTKKIFVGGLP T+ E F+ YF+ +G +TDVVVMYD NT RPRGFGF
Sbjct: 98 NSGMNSGNGGNMRTKKIFVGGLPPTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGF 157
Query: 115 ITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPLIGSYNYGLNRASSYLN 174
IT+D+EEAVDRVL KTFH+LNGK VEVKRA+PK+ +PG + +G G Y
Sbjct: 158 ITFDTEEAVDRVLHKTFHDLNGKQVEVKRALPKDANPG--ANSRMGGAGGGSGGMGGYQG 215
Query: 175 SYAQGFNMNPVGGLGVRMDGRFNLNPLTSSRGGLTPFGFSGY 216
A G N N G R D R+ + P S+ GG P+G S Y
Sbjct: 216 YGASGGNQNAYDG---RSDSRY-MQP-QSAAGGFPPYGSSAY 252
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+F+GG+ E K +F +G + + VM + NT +PRGFGF+ + +DRVL +
Sbjct: 7 KLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVL-E 65
Query: 130 TFHELNGKMVEVKRAVPKE 148
H ++G+ V+ KRA +E
Sbjct: 66 DKHVIDGRTVDAKRAFSRE 84
>Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 203 bits (516), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 117/222 (52%), Positives = 146/222 (65%), Gaps = 13/222 (5%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGV- 59
MR++ TG+ RGFGFVVF+DP+V +RV+ DKH+IDGRTV+AK+A R+DQ G
Sbjct: 38 MREKNTGKPRGFGFVVFSDPSVLDRVLEDKHVIDGRTVDAKRAFSREDQQISVSSRSGNS 97
Query: 60 -----HGSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGF 114
G+ G RTKKIFVGGLP T+ E F+ YF+ +G +TDVVVMYD NT RPRGFGF
Sbjct: 98 NSGMNSGNGGNMRTKKIFVGGLPPTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGF 157
Query: 115 ITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPLIGSYNYGLNRASSYLN 174
IT+D+EEAVDRVL KTFH+LNGK VEVKRA+PK+ +PG + +G G Y
Sbjct: 158 ITFDTEEAVDRVLHKTFHDLNGKQVEVKRALPKDANPG--ANSRMGGAGGGSGGMGGYQG 215
Query: 175 SYAQGFNMNPVGGLGVRMDGRFNLNPLTSSRGGLTPFGFSGY 216
A G N N G R D R+ + P S+ GG P+G S Y
Sbjct: 216 YGASGGNQNAYDG---RSDSRY-MQP-QSAAGGFPPYGSSAY 252
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+F+GG+ E K +F +G + + VM + NT +PRGFGF+ + +DRVL +
Sbjct: 7 KLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVL-E 65
Query: 130 TFHELNGKMVEVKRAVPKE 148
H ++G+ V+ KRA +E
Sbjct: 66 DKHVIDGRTVDAKRAFSRE 84
>Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:47715877-47717644 | 20130731
Length = 371
Score = 155 bits (391), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 83/158 (52%), Positives = 106/158 (67%), Gaps = 9/158 (5%)
Query: 3 DRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTL--------NR 54
DR T RGFGFV F+D + A + D H I GR VE +KA+PR +Q N
Sbjct: 44 DRTTRIPRGFGFVTFSDISSAHNALQDTHAILGRKVEVRKAIPRSEQLQQNQLQNRGGNS 103
Query: 55 QSGGVHGSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGF 114
SG G+ RTKKIFVGGLP+ ++ +FK YF++FG ITDVVVM D T RPRGFGF
Sbjct: 104 YSGYECGNEHI-RTKKIFVGGLPANMSVEEFKRYFERFGRITDVVVMQDSLTHRPRGFGF 162
Query: 115 ITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSPG 152
IT+DSE++V V+ ++FH+LNG+ VEVKRAVP+E + G
Sbjct: 163 ITFDSEDSVQSVMMRSFHDLNGRQVEVKRAVPREGNAG 200
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+FVGG+ TE K++F ++G + + +D T+ PRGFGF+T+ + L
Sbjct: 11 KLFVGGISRETTEDTLKHHFTKYGDVLHSTISFDRTTRIPRGFGFVTFSDISSAHNALQD 70
Query: 130 TFHELNGKMVEVKRAVPK 147
T H + G+ VEV++A+P+
Sbjct: 71 T-HAILGRKVEVRKAIPR 87
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:438661-434987 | 20130731
Length = 383
Score = 141 bits (356), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 73/157 (46%), Positives = 103/157 (65%), Gaps = 13/157 (8%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
M+DR TG+ RGFGF+ +ADP+V ++VI D HII+ + VE K+ +PR G
Sbjct: 77 MKDRKTGQPRGFGFITYADPSVVDKVIEDSHIINSKQVEIKRTIPR-----------GAV 125
Query: 61 GSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 120
GS RTKKIFVGG+PS +TE +F+++F ++G + D +M DH+T R RGFGF+T+D+E
Sbjct: 126 GSKDF-RTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFVTFDTE 184
Query: 121 EAVDRVL-FKTFHELNGKMVEVKRAVPKELSPGPIRS 156
EAVD +L E G VE+K+A PK+ + P S
Sbjct: 185 EAVDDLLSMGNKIEFAGTQVEIKKAEPKKANAPPPSS 221
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 60/101 (59%), Gaps = 7/101 (6%)
Query: 48 DQNTLNRQS-GGVHGSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNT 106
+Q N QS G SPG KIF+GGL T + F +F ++G ITD V+M D T
Sbjct: 28 EQQHHNSQSLTGDGASPG-----KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKT 82
Query: 107 QRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPK 147
+PRGFGFITY VD+V+ + H +N K VE+KR +P+
Sbjct: 83 GQPRGFGFITYADPSVVDKVIEDS-HIINSKQVEIKRTIPR 122
>Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:37290152-37292326 | 20130731
Length = 352
Score = 121 bits (304), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 96/149 (64%), Gaps = 13/149 (8%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
M+DR TGR RGFGF+ +AD +V ++VI + HII+ + VE K+ +P+ T +
Sbjct: 50 MKDRHTGRPRGFGFITYADASVVDQVIQENHIINDKQVEIKRTIPKGASQTNDF------ 103
Query: 61 GSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 120
+TKKIFVGG+P+T++E + K +F + G + + ++ DH T+R RGFGF+ +DS+
Sbjct: 104 ------KTKKIFVGGIPATVSEDELKIFFSKHGNVVEHEIIRDHTTKRSRGFGFVVFDSD 157
Query: 121 EAVDRVLFK-TFHELNGKMVEVKRAVPKE 148
+AVD +L +++ VE+K+A PK+
Sbjct: 158 KAVDNLLADGNMIDMDDTQVEIKKAEPKK 186
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 57/89 (64%), Gaps = 6/89 (6%)
Query: 62 SPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE 121
SPG KIF+GGL T +F YF+++G ITD V+M D +T RPRGFGFITY
Sbjct: 16 SPG-----KIFIGGLAKDTTLEEFVKYFERYGEITDSVIMKDRHTGRPRGFGFITYADAS 70
Query: 122 AVDRVLFKTFHELNGKMVEVKRAVPKELS 150
VD+V+ + H +N K VE+KR +PK S
Sbjct: 71 VVDQVIQEN-HIINDKQVEIKRTIPKGAS 98
>Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 373
Score = 104 bits (259), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 101/176 (57%), Gaps = 17/176 (9%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
M++R+TGR+RGFG+V FA A+ V+ +H++ R +E K A P+++ +
Sbjct: 36 MKERSTGRSRGFGYVTFASVDDAKEVLSGEHVLGDRMLEVKVATPKEEMRAPAK------ 89
Query: 61 GSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 120
+ +IFV +P ++TE F+++F+++G ITD+ + D ++ RG GFIT+ +
Sbjct: 90 ------KVTRIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNA 143
Query: 121 EAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPI----RSPLIGSYNYGLNRASSY 172
E+V+ ++ +T HEL G V V RA PKE P + G+YN ++ A+ Y
Sbjct: 144 ESVENLMSET-HELGGSAVVVDRATPKEDDVKPTGRMSQGGGYGAYNAYISTATRY 198
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 74/178 (41%), Gaps = 34/178 (19%)
Query: 2 RDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPR-DDQNTLNRQSGG-- 58
+D+ + RG GF+ F + E ++ + H + G V +A P+ DD R S G
Sbjct: 125 KDQGSKMHRGIGFITFGNAESVENLMSETHELGGSAVVVDRATPKEDDVKPTGRMSQGGG 184
Query: 59 -----------------------VHGSPGTGR-------TKKIFVGGLPSTITESDFKNY 88
H P GR +KKIFVG LP D + Y
Sbjct: 185 YGAYNAYISTATRYAALGAPTLYDHPGPIYGRGEPRRRISKKIFVGRLPPEANSEDLRQY 244
Query: 89 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVP 146
F +FG I DV + D RGFGF+T+ E DRV + HE+ G V + A P
Sbjct: 245 FGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSLRP-HEICGHEVAIDSATP 301
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 69 KKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLF 128
+K+ V G+P + K Y ++G + D +VM + +T R RGFG++T+ S + VL
Sbjct: 4 RKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLS 63
Query: 129 KTFHELNGKMVEVKRAVPKELSPGPIR 155
H L +M+EVK A PKE P +
Sbjct: 64 GE-HVLGDRMLEVKVATPKEEMRAPAK 89
>Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 101/176 (57%), Gaps = 17/176 (9%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
M++R+TGR+RGFG+V FA A+ V+ +H++ R +E K A P+++ +
Sbjct: 36 MKERSTGRSRGFGYVTFASVDDAKEVLSGEHVLGDRMLEVKVATPKEEMRAPAK------ 89
Query: 61 GSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 120
+ +IFV +P ++TE F+++F+++G ITD+ + D ++ RG GFIT+ +
Sbjct: 90 ------KVTRIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNA 143
Query: 121 EAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPI----RSPLIGSYNYGLNRASSY 172
E+V+ ++ +T HEL G V V RA PKE P + G+YN ++ A+ Y
Sbjct: 144 ESVENLMSET-HELGGSAVVVDRATPKEDDVKPTGRMSQGGGYGAYNAYISTATRY 198
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 74/178 (41%), Gaps = 34/178 (19%)
Query: 2 RDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPR-DDQNTLNRQSGG-- 58
+D+ + RG GF+ F + E ++ + H + G V +A P+ DD R S G
Sbjct: 125 KDQGSKMHRGIGFITFGNAESVENLMSETHELGGSAVVVDRATPKEDDVKPTGRMSQGGG 184
Query: 59 -----------------------VHGSPGTGR-------TKKIFVGGLPSTITESDFKNY 88
H P GR +KKIFVG LP D + Y
Sbjct: 185 YGAYNAYISTATRYAALGAPTLYDHPGPIYGRGEPRRRISKKIFVGRLPPEANSEDLRQY 244
Query: 89 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVP 146
F +FG I DV + D RGFGF+T+ E DRV + HE+ G V + A P
Sbjct: 245 FGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSLRP-HEICGHEVAIDSATP 301
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 69 KKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLF 128
+K+ V G+P + K Y ++G + D +VM + +T R RGFG++T+ S + VL
Sbjct: 4 RKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLS 63
Query: 129 KTFHELNGKMVEVKRAVPKELSPGPIR 155
H L +M+EVK A PKE P +
Sbjct: 64 GE-HVLGDRMLEVKVATPKEEMRAPAK 89
>Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 101/176 (57%), Gaps = 17/176 (9%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
M++R+TGR+RGFG+V FA A+ V+ +H++ R +E K A P+++ +
Sbjct: 36 MKERSTGRSRGFGYVTFASVDDAKEVLSGEHVLGDRMLEVKVATPKEEMRAPAK------ 89
Query: 61 GSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 120
+ +IFV +P ++TE F+++F+++G ITD+ + D ++ RG GFIT+ +
Sbjct: 90 ------KVTRIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNA 143
Query: 121 EAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPI----RSPLIGSYNYGLNRASSY 172
E+V+ ++ +T HEL G V V RA PKE P + G+YN ++ A+ Y
Sbjct: 144 ESVENLMSET-HELGGSAVVVDRATPKEDDVKPTGRMSQGGGYGAYNAYISTATRY 198
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 74/178 (41%), Gaps = 34/178 (19%)
Query: 2 RDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPR-DDQNTLNRQSGG-- 58
+D+ + RG GF+ F + E ++ + H + G V +A P+ DD R S G
Sbjct: 125 KDQGSKMHRGIGFITFGNAESVENLMSETHELGGSAVVVDRATPKEDDVKPTGRMSQGGG 184
Query: 59 -----------------------VHGSPGTGR-------TKKIFVGGLPSTITESDFKNY 88
H P GR +KKIFVG LP D + Y
Sbjct: 185 YGAYNAYISTATRYAALGAPTLYDHPGPIYGRGEPRRRISKKIFVGRLPPEANSEDLRQY 244
Query: 89 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVP 146
F +FG I DV + D RGFGF+T+ E DRV + HE+ G V + A P
Sbjct: 245 FGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSLRP-HEICGHEVAIDSATP 301
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 69 KKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLF 128
+K+ V G+P + K Y ++G + D +VM + +T R RGFG++T+ S + VL
Sbjct: 4 RKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLS 63
Query: 129 KTFHELNGKMVEVKRAVPKELSPGPIR 155
H L +M+EVK A PKE P +
Sbjct: 64 GE-HVLGDRMLEVKVATPKEEMRAPAK 89
>Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 397
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 101/176 (57%), Gaps = 17/176 (9%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
M++R+TGR+RGFG+V FA A+ V+ +H++ R +E K A P+++ +
Sbjct: 36 MKERSTGRSRGFGYVTFASVDDAKEVLSGEHVLGDRMLEVKVATPKEEMRAPAK------ 89
Query: 61 GSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 120
+ +IFV +P ++TE F+++F+++G ITD+ + D ++ RG GFIT+ +
Sbjct: 90 ------KVTRIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNA 143
Query: 121 EAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPI----RSPLIGSYNYGLNRASSY 172
E+V+ ++ +T HEL G V V RA PKE P + G+YN ++ A+ Y
Sbjct: 144 ESVENLMSET-HELGGSAVVVDRATPKEDDVKPTGRMSQGGGYGAYNAYISTATRY 198
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 74/178 (41%), Gaps = 34/178 (19%)
Query: 2 RDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPR-DDQNTLNRQSGG-- 58
+D+ + RG GF+ F + E ++ + H + G V +A P+ DD R S G
Sbjct: 125 KDQGSKMHRGIGFITFGNAESVENLMSETHELGGSAVVVDRATPKEDDVKPTGRMSQGGG 184
Query: 59 -----------------------VHGSPGTGR-------TKKIFVGGLPSTITESDFKNY 88
H P GR +KKIFVG LP D + Y
Sbjct: 185 YGAYNAYISTATRYAALGAPTLYDHPGPIYGRGEPRRRISKKIFVGRLPPEANSEDLRQY 244
Query: 89 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVP 146
F +FG I DV + D RGFGF+T+ E DRV + HE+ G V + A P
Sbjct: 245 FGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSLRP-HEICGHEVAIDSATP 301
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 69 KKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLF 128
+K+ V G+P + K Y ++G + D +VM + +T R RGFG++T+ S + VL
Sbjct: 4 RKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLS 63
Query: 129 KTFHELNGKMVEVKRAVPKELSPGPIR 155
H L +M+EVK A PKE P +
Sbjct: 64 GE-HVLGDRMLEVKVATPKEEMRAPAK 89
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
KIFVG LP + F+Q GT+ V+Y+ +T R RGFGF+T + E V+R + K
Sbjct: 123 KIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAVNK 182
Query: 130 -TFHELNGKMVEVKRAVPK 147
+ EL+G+++ V +A P+
Sbjct: 183 FSGFELDGRLLTVNKAAPR 201
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 66/151 (43%), Gaps = 23/151 (15%)
Query: 3 DRATGRARGFGFVVFADPAVAERVI--VDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
+R T R+RGFGFV + ER + +DGR + KA PR
Sbjct: 156 NRDTDRSRGFGFVTMSTSEEVERAVNKFSGFELDGRLLTVNKAAPR-------------- 201
Query: 61 GSPGTGRTK------KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGF 114
G+P + + + +VG LP + S + F + G + V+YD T R RGFGF
Sbjct: 202 GTPRLRQPRTFNSGLRAYVGNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETGRSRGFGF 261
Query: 115 ITYDSE-EAVDRVLFKTFHELNGKMVEVKRA 144
+T +E E D + NG+ + V A
Sbjct: 262 VTMSNEAEMNDAIAALDGQSFNGRAIRVNVA 292
>Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr4:34502474-34498575 | 20130731
Length = 356
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 13/143 (9%)
Query: 3 DRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVHGS 62
D+ATGR++G+GFVV+ +H+ DG + K+ + D Q +
Sbjct: 110 DKATGRSKGYGFVVY------------RHV-DGAVLALKEPSKKIDGRMTVTQLAAAGST 156
Query: 63 PGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEA 122
G ++K+FVG +P ++ + F ++G I + + +D + + RGF F Y +EE
Sbjct: 157 GGDVSSRKVFVGNVPFEVSAESLLSEFSKYGEIEEGPLGFDKASGKTRGFAFFVYKTEEG 216
Query: 123 VDRVLFKTFHELNGKMVEVKRAV 145
+ ++ ++G V K AV
Sbjct: 217 AKNSVAESMKTVDGHQVICKFAV 239
>Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein,
putative | HC | chr1:41816599-41813158 | 20130731
Length = 284
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 9/134 (6%)
Query: 11 GFGFVVFADPAVAERV-----IVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVHGSPGT 65
FGF D A + ++ D E K R+ +N+LN + +
Sbjct: 129 NFGFCCELDEDCAHELSGVPGVLSVQPDDNFESENKDYEGRNLENSLNMPNSSEASQEAS 188
Query: 66 GRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDR 125
+TKK+FV GL +E + F+ FG + +V V+ D ++R +G+ FI Y +EEA
Sbjct: 189 VKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYTTEEAASA 248
Query: 126 VLFKTFHELNGKMV 139
L E+NGK++
Sbjct: 249 AL----KEMNGKII 258
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 80/156 (51%), Gaps = 15/156 (9%)
Query: 3 DRATGRARGFGFVVFADPAVAERVI--VDKHIIDGRT--VEAKKAVPRDDQNTL---NRQ 55
D++TGR+RGFGFV + A E ++ +++DGR V A P +N+ N +
Sbjct: 118 DKSTGRSRGFGFVTMSSAAEVEAAAQQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPR 177
Query: 56 SGG--VHGSPGTGRT---KKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPR 110
GG G P G + ++ VG L + ++ F + G + + V+YD + R R
Sbjct: 178 FGGDRPRGPPRGGSSDGDNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSR 237
Query: 111 GFGFITYDSEEAVDRVLFKTFH--ELNGKMVEVKRA 144
GFGF+T+ S + VD + +T +LNG+ + V A
Sbjct: 238 GFGFVTFSSADEVDSAI-RTLDGADLNGRAIRVSPA 272
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 80/156 (51%), Gaps = 15/156 (9%)
Query: 3 DRATGRARGFGFVVFADPAVAERVI--VDKHIIDGRT--VEAKKAVPRDDQNTL---NRQ 55
D++TGR+RGFGFV + A E ++ +++DGR V A P +N+ N +
Sbjct: 118 DKSTGRSRGFGFVTMSSAAEVEAAAQQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPR 177
Query: 56 SGG--VHGSPGTGRT---KKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPR 110
GG G P G + ++ VG L + ++ F + G + + V+YD + R R
Sbjct: 178 FGGDRPRGPPRGGSSDGDNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSR 237
Query: 111 GFGFITYDSEEAVDRVLFKTFH--ELNGKMVEVKRA 144
GFGF+T+ S + VD + +T +LNG+ + V A
Sbjct: 238 GFGFVTFSSADEVDSAI-RTLDGADLNGRAIRVSPA 272
>Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:41240036-41242642 | 20130731
Length = 89
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 9/86 (10%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+FV L T+ ++ F FG +T+ ++ D NTQRP+GFGF++Y SE + K
Sbjct: 8 KLFVSRLSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAE----K 63
Query: 130 TFHELNGKMVE-----VKRAVPKELS 150
LNG++V+ V+ A PK+ S
Sbjct: 64 ARKALNGRIVDGRLIFVEHAKPKDSS 89
>Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54300708-54296502 | 20130731
Length = 372
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 61/133 (45%), Gaps = 18/133 (13%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+FVGGL + YF+QFG I + VV+ D NT R +G+GF+T+ EA R
Sbjct: 30 KVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 89
Query: 130 TFHELNGKMVEVKRAV---PK--ELSPGPIR--SPLIGSYN---------YGLNRASSYL 173
++G+ A P+ +S G +R SP +GS YG + SY
Sbjct: 90 PSPVIDGRRANCNLASHGRPRGPPISYGRVRPASPYVGSLQPARGAYVGGYGYQQPLSY- 148
Query: 174 NSYAQGFNMNPVG 186
Y QG P G
Sbjct: 149 -GYQQGMVYPPYG 160
>Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54301450-54296178 | 20130731
Length = 281
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 61/133 (45%), Gaps = 18/133 (13%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+FVGGL + YF+QFG I + VV+ D NT R +G+GF+T+ EA R
Sbjct: 30 KVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 89
Query: 130 TFHELNGKMVEVKRAV---PK--ELSPGPIR--SPLIGSYN---------YGLNRASSYL 173
++G+ A P+ +S G +R SP +GS YG + SY
Sbjct: 90 PSPVIDGRRANCNLASHGRPRGPPISYGRVRPASPYVGSLQPARGAYVGGYGYQQPLSY- 148
Query: 174 NSYAQGFNMNPVG 186
Y QG P G
Sbjct: 149 -GYQQGMVYPPYG 160
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 70/151 (46%), Gaps = 22/151 (14%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVI--VDKHIIDGRTVE---AKKAVPRDDQNTLNRQ 55
+ DR TG++RGF FV + VI +D GRT+ + K P++
Sbjct: 145 LYDRDTGKSRGFAFVTMSCVEDCNAVIQNLDGKEFMGRTLRVNFSDKPKPKE-------- 196
Query: 56 SGGVHGSPGTGRTK-KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGF 114
P T+ K+FVG L T+T F + GT+ V++D T + RG+GF
Sbjct: 197 -------PLYPETEYKLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGF 249
Query: 115 ITYDSEEAVDRVLFKTFH-ELNGKMVEVKRA 144
++Y ++ +D L + EL G+ + V A
Sbjct: 250 VSYATKSEMDTALAIMDNVELEGRTLRVSLA 280
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 68 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 127
+ K+F+GGL + + ++ F +G + + V+ D T R RGFGF+ + SEE+ L
Sbjct: 35 SSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL 94
Query: 128 FKTFHELNGKMVEVKRAVPKE 148
+LNG+ + V A ++
Sbjct: 95 SMDGQDLNGRNIRVSYANDRQ 115
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV 123
K+FVGGL ++ E K+ F FG +T+V ++YD ++ R RGFGF+ + +E+A
Sbjct: 37 KLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAA 90
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 68 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDRV 126
T K+F+GG+ + E+ + F ++G + D ++ D T R RGFGFIT++S EEA +
Sbjct: 41 TTKLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAI 100
Query: 127 LFKTFHELNGKMVEVKRA 144
+L+G+ V V A
Sbjct: 101 QALDGQDLHGRRVRVNYA 118
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 68 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSEEAVDRV 126
+ K+F+GG+ + E+ + F ++G + D ++ D +T R RGFGFIT+ SEEA +
Sbjct: 39 SAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSAL 98
Query: 127 LFKTFHELNGKMVEVKRAVPK 147
EL+G+ V V A +
Sbjct: 99 QAMDNKELDGRTVRVNYATER 119
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 68 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSEEAVDRV 126
+ K+F+GG+ + E+ + F ++G + D ++ D +T R RGFGFIT+ SEEA +
Sbjct: 39 SAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSAL 98
Query: 127 LFKTFHELNGKMVEVKRAVPK 147
EL+G+ V V A +
Sbjct: 99 QAMDNKELDGRTVRVNYATER 119
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGV- 59
+R++ TG+ G+GF+ F + AERV+ +G + + R LN S G+
Sbjct: 47 IRNKITGQPEGYGFIEFVSHSAAERVL---QTYNGTQMPGTEQTFR-----LNWASFGIG 98
Query: 60 HGSPGTGRTKKIFVGGLPSTITESDFKNYF-DQFGTITDVVVMYDHNTQRPRGFGFITYD 118
P G IFVG L +T+ + F +G++ V+ D NT R +G+GF+ +
Sbjct: 99 ERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFS 158
Query: 119 SEEAVDRVLFKTFHELNG-----KMVEVKRAVPKELS 150
E +R + E+NG + + + A PK+ +
Sbjct: 159 DESERNRAM----SEMNGVYCSTRPMRISAATPKKTT 191
>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176327 | 20130731
Length = 425
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 61/141 (43%), Gaps = 14/141 (9%)
Query: 3 DRATGRARGFGFVVFADPAVAERVIVDKH--IIDGRTVEAKKAVPRDDQ-NTLNRQSGGV 59
D TGR++G+GFV F D + + + + R + A PR + QS G
Sbjct: 225 DANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQPGGQSNGT 284
Query: 60 HG-SPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYD 118
S IFVGGL S +T+ D K F Q+G I V + +G GF+ +
Sbjct: 285 SSQSEADSTNTTIFVGGLDSNVTDEDLKQTFSQYGEIASVKIPVG------KGCGFVQFA 338
Query: 119 SEEAVDRVLFKTFHELNGKMV 139
+ + L K LNG M+
Sbjct: 339 NRNNAEEALQK----LNGTMI 355
>Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:12141158-12149871 | 20130731
Length = 272
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+FVGGL + K YF+QFG I + VV+ D T R +G+GF+T+ +A R
Sbjct: 17 KVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACVD 76
Query: 130 TFHELNGKMVEVKRA 144
++G+ A
Sbjct: 77 AAPIIDGRRANCNLA 91
>Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:12141158-12149871 | 20130731
Length = 267
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+FVGGL + K YF+QFG I + VV+ D T R +G+GF+T+ +A R
Sbjct: 17 KVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACVD 76
Query: 130 TFHELNGKMVEVKRA 144
++G+ A
Sbjct: 77 AAPIIDGRRANCNLA 91
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 69/150 (46%), Gaps = 17/150 (11%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQS---G 57
MRD A GR++ FGFV F + A + + ++G+ V+ K+ Q R+ G
Sbjct: 243 MRD-ADGRSKCFGFVNFENAEDAAKAV---EALNGKKVDDKEWYVGKAQKKSEREQELKG 298
Query: 58 GVHGSPGTGRTKK-----IFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGF 112
+ K +++ L +IT+ K F +FGTIT +M D N RG
Sbjct: 299 RFEQTVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKIMRDPNGVS-RGS 357
Query: 113 GFITYDSEEAVDRVLFKTFHELNGKMVEVK 142
GF+ + + E R L E+NGKM+ K
Sbjct: 358 GFVAFSTPEEASRAL----GEMNGKMIVSK 383
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 17/140 (12%)
Query: 6 TGRARGFGFVVFADPAVAERVI--VDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVHGSP 63
+G+++G+GFV F A+ I ++ +I+ + V + + D++ + ++
Sbjct: 156 SGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQDRDNVLSKT------- 208
Query: 64 GTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV 123
+ ++V L + TE D KN F +GTIT V+M D + R + FGF+ +++ E
Sbjct: 209 ---KFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADG-RSKCFGFVNFENAEDA 264
Query: 124 DRVLFKTFHELNGKMVEVKR 143
K LNGK V+ K
Sbjct: 265 ----AKAVEALNGKKVDDKE 280
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 18/129 (13%)
Query: 2 RDRATGRARGFGFVVFADPAVAERVIVDKHIID--GRTVEAKKAVPRDDQNTLNRQSGGV 59
+DR T + +G+GFV F A+ I ++I G+ + KA D+ +L+ +
Sbjct: 58 KDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA--SQDKKSLDVGA--- 112
Query: 60 HGSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTI-TDVVVMYDHNTQRPRGFGFITYD 118
+F+G L + E + F FG I T+ +M D +T RGFGFI+YD
Sbjct: 113 ----------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYD 162
Query: 119 SEEAVDRVL 127
S EA D +
Sbjct: 163 SFEASDSAI 171
>Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:26612934-26618708 | 20130731
Length = 283
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 127
K+FVGGL + + YF+QFG I + V++ D NT + +G+GF+T+ E+ R
Sbjct: 17 KVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRAC 74
>Medtr1g048080.1 | pentatricopeptide (PPR) repeat protein | HC |
chr1:18204785-18193518 | 20130731
Length = 952
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 21/120 (17%)
Query: 27 IVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVHGSPGTGRTKKIFVGGLPSTITESDFK 86
I+++ + DG E K + DD+N RQ G KIF+G LP + + +
Sbjct: 134 ILEEEVDDG---EGKNS-GSDDRNQF-RQPG------------KIFIGNLPGWVKKQEVS 176
Query: 87 NYFDQFGTITDVVVMYDHN-TQRPRGFGFITYDSEEAVDRVLFKTFH---ELNGKMVEVK 142
+F QFG I V+++ HN R GFGF+ Y+ E A + + E +GK++ VK
Sbjct: 177 EFFRQFGPINSVILIRGHNDVSRNAGFGFVIYEGETAENSAMKAVEFDGVEFHGKVLTVK 236
>Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC |
chr4:33938062-33942519 | 20130731
Length = 454
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 26/166 (15%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQN-TLNRQSGGV 59
+R++ TG++ G+GFV F A+AE+V+ + +G +P DQ LN +
Sbjct: 148 IRNKQTGQSEGYGFVEFYTRAMAEKVLQN---FNG------TMMPNTDQAFRLNWATFSA 198
Query: 60 HGSPGTGRTKK------IFVGGLPSTITESDFKNYF-DQFGTITDVVVMYDHNTQRPRGF 112
G G R+ + +FVG L +T++ + F +F +I V+ D NT R +G+
Sbjct: 199 AGGGGERRSSEATSDLSVFVGDLAIDVTDAMLQETFASKFSSIKGAKVVIDSNTGRSKGY 258
Query: 113 GFITYDSEEAVDRVLFKTFHELNG-----KMVEVKRAVPKELSPGP 153
GF+ + E R + E+NG + + V A PK+ P
Sbjct: 259 GFVRFGDESERTRAM----TEMNGVYCSSRPMRVGVATPKKTYGNP 300
>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:37745112-37734961 | 20130731
Length = 865
Score = 52.8 bits (125), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/127 (23%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 22 VAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVHGSPGTGRTKKIFVGGLPSTIT 81
V + V DK ++ E + + P D + G ++FV LP + T
Sbjct: 296 VGKDVANDKSQVNATEEEGQLSNPEDKK--------------GVSEPCRLFVRNLPYSTT 341
Query: 82 ESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHEL-NGKMVE 140
E + + +F QFG+++ ++ D +T+R +G +I + + E R L ++ + + G+++
Sbjct: 342 EEELEEHFSQFGSVSQAHLVVDKDTKRSKGIAYIHFSAPEFAARALEESDNSIFQGRLLH 401
Query: 141 VKRAVPK 147
V A+P+
Sbjct: 402 VMPAIPR 408
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 13/138 (9%)
Query: 6 TGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVHGSPGT 65
+G+++G+GFV F A++ I ++G + K+ R+S G
Sbjct: 158 SGQSKGYGFVQFDTEEAAQKAI---EKLNGMLLNDKQVYVGPFLRKQERESTG-----DR 209
Query: 66 GRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDR 125
+ +FV L + T+ + K F +FGTIT VVM D + + + FGF+ ++S + R
Sbjct: 210 AKFNNVFVKNLSESTTDDELKKTFGEFGTITSAVVMRDGDG-KSKCFGFVNFESTDDAAR 268
Query: 126 VLFKTFHELNGKMVEVKR 143
+ LNGK ++ K
Sbjct: 269 AV----EALNGKKIDDKE 282
>Medtr4g124940.1 | nucleolysin TIAR-like protein | HC |
chr4:51822192-51817182 | 20130731
Length = 404
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 74/182 (40%), Gaps = 31/182 (17%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDK--HIIDGRTVEAKKAVPRDDQNTLNRQSGG 58
M D+ TGR+RGFGFV F + A+ I D + R + A + N N+ S
Sbjct: 163 MWDQKTGRSRGFGFVSFRNQQEAQSAINDLTGKWLGSRQIRCNWATKGANMNGENQSSES 222
Query: 59 ---VHGSPGTGRTKK----------------IFVGGLPSTITESDFKNYFDQF--GTITD 97
V + GT + ++VG L +T D ++F GTI D
Sbjct: 223 KSVVELTSGTSEEAQEMTSDDSPEKNPQYTTVYVGNLAPEVTSVDLHHHFHALGVGTIED 282
Query: 98 VVVMYDHNTQRPRGFGFITYDSE-EAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRS 156
V V QR +GFGF+ Y + EA + L GK ++ K PG +
Sbjct: 283 VRV------QRDKGFGFVRYSTHGEAALAIQMGNTRFLFGKPIKCSWGS-KPTPPGTAST 335
Query: 157 PL 158
PL
Sbjct: 336 PL 337
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 65/146 (44%), Gaps = 10/146 (6%)
Query: 3 DRATGRARGFGFVVFADPAVAERVI--VDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
+R T +RGFGFV + AE + + + +GR++ KA P+ + ++
Sbjct: 143 NRQTDLSRGFGFVTMSTVEEAESAVEKFNGYDYNGRSLVVNKASPKGSRPERTERA---- 198
Query: 61 GSPGTGR-TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITY-D 118
P T +I+V L + S + F + G I V+YD T R RGFGF+T D
Sbjct: 199 --PRTFEPVLRIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSD 256
Query: 119 SEEAVDRVLFKTFHELNGKMVEVKRA 144
E D + L G+ + V A
Sbjct: 257 ETEMNDAIAALDGQSLEGRTIRVSVA 282
>Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC |
chr4:55111286-55115662 | 20130731
Length = 411
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 83/194 (42%), Gaps = 38/194 (19%)
Query: 3 DRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVHGS 62
DR TGR +G+GFV FAD + R + + + T + P ++N + S + +
Sbjct: 202 DRTTGRTKGYGFVRFADESEQMRAMTEMQGVLCST-RPMRIGPASNKNLGTQTSKASYQN 260
Query: 63 PGTGRTKK-------IFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRG--FG 113
P G + IFVG L +T+ K F Q+G + V + P G G
Sbjct: 261 PQGGAQNENDPNNTTIFVGNLDPNVTDEHLKQVFTQYGELVHVKI--------PSGKRCG 312
Query: 114 FITY----DSEEAVDRVLFKTFHELNGKMVEV---KRAVPKELSPGPIRSPLIGSYNYGL 166
F+ + +EEA+ RVL T L G+ V + + K+ P +
Sbjct: 313 FVQFADRSSAEEAL-RVLNGTL--LGGQNVRLSWGRSPANKQTQQDPNQ----------W 359
Query: 167 NRASSYLNSYAQGF 180
N +SSY YAQG+
Sbjct: 360 NGSSSYFGGYAQGY 373
>Medtr8g092550.1 | CC1-like splicing factor | HC |
chr8:38688579-38694751 | 20130731
Length = 567
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 6/137 (4%)
Query: 3 DRATGRARGFGFVVFADP-AVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVHG 61
DR + R++G G++ F D +V + + ++ G+ V K + + N SG
Sbjct: 236 DRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASSGAAVV 295
Query: 62 SPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE 121
P +K++VG L +TE++ + F+ FG I V + D T +GFGF+ + E
Sbjct: 296 GPYGAVDRKLYVGNLHFNMTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLE 355
Query: 122 AVDRVLFKTFHELNGKM 138
K LNGK+
Sbjct: 356 HA-----KAAQSLNGKL 367
>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 420
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 18/143 (12%)
Query: 3 DRATGRARGFGFVVFADPAVAERVIVDKH--IIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
D TGR++G+GFV F D + + + + R + A PR +++ +Q G +
Sbjct: 222 DANTGRSKGYGFVRFGDDGERSKALNEMNGVFCSSRAMRIGAATPR--KSSGYQQGGQSN 279
Query: 61 GSPGTGRTKK----IFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFIT 116
G+P T IFVGGL + T D + F Q+G I V + +G GF+
Sbjct: 280 GTPSQSDTDSTNTTIFVGGLDPSATAEDLRQPFSQYGEIVSVKIPVG------KGCGFVQ 333
Query: 117 YDSEEAVDRVLFKTFHELNGKMV 139
+ + + L K LNG V
Sbjct: 334 FANRNNAEEALQK----LNGTTV 352
>Medtr7g094670.1 | mRNA capping enzyme, putative | LC |
chr7:37775862-37750453 | 20130731
Length = 1678
Score = 52.4 bits (124), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 15/126 (11%)
Query: 22 VAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVHGSPGTGRTKKIFVGGLPSTIT 81
V + V DK ++ E + + P D + G ++FV LP + T
Sbjct: 866 VGKDVANDKSQVNSTEEEGQLSNPEDKK--------------GVSEPCRLFVRNLPYSTT 911
Query: 82 ESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHEL-NGKMVE 140
E + + +F QFG+++ V ++ D +T+R +G FI + E R L ++ + + G+++
Sbjct: 912 EEELEEHFSQFGSVSQVHLVVDKDTKRSKGRAFIHFSVPEFAARALEESDNSIFQGRLLH 971
Query: 141 VKRAVP 146
V A+P
Sbjct: 972 VIAAIP 977
>Medtr3g095230.1 | CC1-like splicing factor | LC |
chr3:43513030-43521003 | 20130731
Length = 587
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 9/139 (6%)
Query: 3 DRATGRARGFGFVVFADP-AVAERVIVDKHIIDGRTVEAKKAVPRDD--QNTLNRQSGGV 59
DR + R++G G++ F D +V + + ++ G+ V K + + Q+ + GV
Sbjct: 249 DRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGV 308
Query: 60 HGSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 119
G P +K++VG L +TES + F+ FGT+ V + D T +GFGFI +
Sbjct: 309 VG-PYGAVDRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAH 367
Query: 120 EEAVDRVLFKTFHELNGKM 138
E K LNGK+
Sbjct: 368 IEHA-----KAAQSLNGKL 381
>Medtr3g095230.2 | CC1-like splicing factor | LC |
chr3:43513031-43520987 | 20130731
Length = 576
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 9/139 (6%)
Query: 3 DRATGRARGFGFVVFADP-AVAERVIVDKHIIDGRTVEAKKAVPRDD--QNTLNRQSGGV 59
DR + R++G G++ F D +V + + ++ G+ V K + + Q+ + GV
Sbjct: 249 DRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGV 308
Query: 60 HGSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 119
G P +K++VG L +TES + F+ FGT+ V + D T +GFGFI +
Sbjct: 309 VG-PYGAVDRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAH 367
Query: 120 EEAVDRVLFKTFHELNGKM 138
E K LNGK+
Sbjct: 368 IEHA-----KAAQSLNGKL 381
>Medtr3g095230.3 | CC1-like splicing factor | LC |
chr3:43513031-43520279 | 20130731
Length = 576
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 9/139 (6%)
Query: 3 DRATGRARGFGFVVFADP-AVAERVIVDKHIIDGRTVEAKKAVPRDD--QNTLNRQSGGV 59
DR + R++G G++ F D +V + + ++ G+ V K + + Q+ + GV
Sbjct: 249 DRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGV 308
Query: 60 HGSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 119
G P +K++VG L +TES + F+ FGT+ V + D T +GFGFI +
Sbjct: 309 VG-PYGAVDRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAH 367
Query: 120 EEAVDRVLFKTFHELNGKM 138
E K LNGK+
Sbjct: 368 IEHA-----KAAQSLNGKL 381
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 52.0 bits (123), Expect = 5e-07, Method: Composition-based stats.
Identities = 59/232 (25%), Positives = 101/232 (43%), Gaps = 21/232 (9%)
Query: 5 ATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVHGSPG 64
+ G++ G+GFV + D + + ++K +DG ++ KKA + RQ +GSP
Sbjct: 50 SNGKSLGYGFVQY-DNHESAKCAIEK--LDGMLIKDKKAFV---GYFIRRQERSENGSP- 102
Query: 65 TGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE--- 121
+ ++V L T T+ D K F +G IT V+M D N + FGF+ + S +
Sbjct: 103 --KFTNVYVKNLLETDTDEDLKKLFSTYGVITSAVIMKDENGNS-KCFGFVNFQSPDSAA 159
Query: 122 -AVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPL----IGSYNYGLNRASSYLNSY 176
AV+++ T ++ GK++ V RA K +R+ I Y L A+ YL +
Sbjct: 160 AAVEKLNGTTTND--GKVLYVGRAQRKCEREAELRAKFEQEKIKRYE-KLQGANLYLKNL 216
Query: 177 AQGFNMNPVGGLGVRMDGRFNLNPLTSSRGGLTPFGFSGYGMGVNLDSAIAG 228
+ N + + + + + G FGF + AI G
Sbjct: 217 DESINDEKLKEMFSEFGTITSCKVMFDAHGHSKGFGFVAFSTSEEASKAING 268
>Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9035953-9039164 | 20130731
Length = 282
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 127
K+FVGGL + YF+QFG I + VV+ D T R +G+GF+T+ EA R
Sbjct: 26 KLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRAC 83
>Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9035953-9039164 | 20130731
Length = 280
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 127
K+FVGGL + YF+QFG I + VV+ D T R +G+GF+T+ EA R
Sbjct: 26 KLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRAC 83
>Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26401562-26402849 | 20130731
Length = 190
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
+ FVGGL + F +FG ITD V+ D T R RGFGF+T+ A ++ +
Sbjct: 9 RCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTF----AEEKSMRD 64
Query: 130 TFHELNGKMVE 140
E+NG+ ++
Sbjct: 65 AIEEMNGQDID 75
>Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr6:28646362-28643393 | 20130731
Length = 183
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
+++V GL TE +N F FG + DV ++ D RPRGF F+ Y +EE + + +
Sbjct: 96 RLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAI-E 154
Query: 130 TFH--ELNGKMVEVKRAVPK-ELSPG 152
H L+G+++ V+ A P+ EL G
Sbjct: 155 GMHGKFLDGRVIFVEVAKPRSELRQG 180
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDRVLF 128
K+FVGG+ E + F ++G + D ++ D + R +GFGF+TY++ EEA +
Sbjct: 45 KLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQA 104
Query: 129 KTFHELNGKMVEVKRA 144
+L G+ V V A
Sbjct: 105 LDGQDLYGRRVGVNFA 120
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDRVLF 128
K+FVGG+ E + F ++G + D ++ D + R +GFGF+TY++ EEA +
Sbjct: 45 KLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQA 104
Query: 129 KTFHELNGKMVEVKRA 144
+L G+ V V A
Sbjct: 105 LDGQDLYGRRVGVNFA 120
>Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 60/144 (41%), Gaps = 6/144 (4%)
Query: 3 DRATGRARGFGFVVFADPAVAERVIVD-KHIIDGRTVEAKKAVPRDDQNTLNRQSGGVHG 61
D+A+G+++G+ F++F R + + +I RT + A
Sbjct: 199 DKASGKSKGYAFILFKHRTGCRRALKQPQKVIGNRTTSCQLASAGPVPAPPPNAPPVSEY 258
Query: 62 SPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE 121
+ +KIFV + S I +F QFG + D + D T +P+GF Y + E
Sbjct: 259 T-----QRKIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVE 313
Query: 122 AVDRVLFKTFHELNGKMVEVKRAV 145
+ + L + G + ++AV
Sbjct: 314 SAKKALEEPNKVFEGHTLYCQKAV 337
>Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 60/144 (41%), Gaps = 6/144 (4%)
Query: 3 DRATGRARGFGFVVFADPAVAERVIVD-KHIIDGRTVEAKKAVPRDDQNTLNRQSGGVHG 61
D+A+G+++G+ F++F R + + +I RT + A
Sbjct: 199 DKASGKSKGYAFILFKHRTGCRRALKQPQKVIGNRTTSCQLASAGPVPAPPPNAPPVSEY 258
Query: 62 SPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE 121
+ +KIFV + S I +F QFG + D + D T +P+GF Y + E
Sbjct: 259 T-----QRKIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVE 313
Query: 122 AVDRVLFKTFHELNGKMVEVKRAV 145
+ + L + G + ++AV
Sbjct: 314 SAKKALEEPNKVFEGHTLYCQKAV 337
>Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 60/144 (41%), Gaps = 6/144 (4%)
Query: 3 DRATGRARGFGFVVFADPAVAERVIVD-KHIIDGRTVEAKKAVPRDDQNTLNRQSGGVHG 61
D+A+G+++G+ F++F R + + +I RT + A
Sbjct: 199 DKASGKSKGYAFILFKHRTGCRRALKQPQKVIGNRTTSCQLASAGPVPAPPPNAPPVSEY 258
Query: 62 SPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE 121
+ +KIFV + S I +F QFG + D + D T +P+GF Y + E
Sbjct: 259 T-----QRKIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVE 313
Query: 122 AVDRVLFKTFHELNGKMVEVKRAV 145
+ + L + G + ++AV
Sbjct: 314 SAKKALEEPNKVFEGHTLYCQKAV 337
>Medtr3g462330.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:24877263-24880115 | 20130731
Length = 340
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 23/136 (16%)
Query: 71 IFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDR-VLFK 129
++V GL IT+ + + +F G + DV ++ D T+ RGFGF+T D+ E DR V +
Sbjct: 47 LYVTGLSPRITKRELEKHFSAKGKVVDVHLVVDPWTRESRGFGFVTMDTLEEADRCVKYL 106
Query: 130 TFHELNGKMVEVKRAVP-------------------KELSP--GPIRSPLIGSYNYGLNR 168
L G+++ V++A + SP P RSP Y NR
Sbjct: 107 NRSVLEGRVITVEKARRRRGRTPTPGKYLGLKTIRGRRRSPSYSPRRSPSYSPYRRSYNR 166
Query: 169 ASSYLNSYAQGFNMNP 184
S Y + +++ + +P
Sbjct: 167 -SPYSSDHSRSRSYSP 181
>Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:22547309-22542060 | 20130731
Length = 445
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 12/145 (8%)
Query: 3 DRATGRARGFGFVVF--ADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
D+ATG+++G+GFV F D A+ K IDGR + A + + N
Sbjct: 107 DKATGKSKGYGFVTFLHVDGALLALREPSKR-IDGRVTVTQLAAAGNSGSNTNAADVA-- 163
Query: 61 GSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 120
+KI+V +P + +F +G I + + +D T R +GF Y +
Sbjct: 164 -------QRKIYVSNVPPDLPGDKLLAHFSIYGEIEEGPLGFDKQTGRSKGFALFVYKTP 216
Query: 121 EAVDRVLFKTFHELNGKMVEVKRAV 145
E + + + + G+ + K A+
Sbjct: 217 EGANAAVSEPVKNVEGRQLNCKLAI 241
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 9/121 (7%)
Query: 3 DRATGRARGFGFVVFADPAVAERVI--VDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
+R T +RGFGFV + AE + + + +GR++ KA P+ + ++
Sbjct: 143 NRQTDLSRGFGFVTMSTVEEAESAVEKFNGYDYNGRSLVVNKASPKGSRPERTERA---- 198
Query: 61 GSPGTGR-TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 119
P T +I+V L + S + F + G I V+YD T R RGFGF+T
Sbjct: 199 --PRTFEPVLRIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSD 256
Query: 120 E 120
E
Sbjct: 257 E 257
>Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSEEAV 123
KIFVGGL K YFDQFG I + VV+ D T + +G+GF+T+ D A+
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAI 81
>Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSEEAV 123
KIFVGGL K YFDQFG I + VV+ D T + +G+GF+T+ D A+
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAI 81
>Medtr3g109090.3 | nucleolysin TIAR-like protein | HC |
chr3:50426665-50437301 | 20130731
Length = 424
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 70/181 (38%), Gaps = 28/181 (15%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDK--HIIDGRTVEAKKAVP-----------RD 47
M D TGR++G+GFV F D A+ I D + R + A D
Sbjct: 161 MWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKIND 220
Query: 48 DQNTLNRQSGGVHGSPGTGRTKK---------IFVGGLPSTITESDFKNYFDQFGTITDV 98
QN + +G G ++VG LP +T+++ F G
Sbjct: 221 SQNAVVLTNGSSDGGQDNSNEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHALG----A 276
Query: 99 VVMYDHNTQRPRGFGFITYDS-EEAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSP 157
V+ + Q +GFGF+ Y++ EEA + + GK ++ K PG +P
Sbjct: 277 GVLEEVRVQSGKGFGFVRYNTHEEAAMAIQMANGRPVRGKTMKCSWG-SKPTPPGTASNP 335
Query: 158 L 158
L
Sbjct: 336 L 336
>Medtr3g109090.1 | nucleolysin TIAR-like protein | HC |
chr3:50427006-50436985 | 20130731
Length = 440
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 70/181 (38%), Gaps = 28/181 (15%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDK--HIIDGRTVEAKKAVP-----------RD 47
M D TGR++G+GFV F D A+ I D + R + A D
Sbjct: 177 MWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKIND 236
Query: 48 DQNTLNRQSGGVHGSPGTGRTKK---------IFVGGLPSTITESDFKNYFDQFGTITDV 98
QN + +G G ++VG LP +T+++ F G
Sbjct: 237 SQNAVVLTNGSSDGGQDNSNEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHALG----A 292
Query: 99 VVMYDHNTQRPRGFGFITYDS-EEAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSP 157
V+ + Q +GFGF+ Y++ EEA + + GK ++ K PG +P
Sbjct: 293 GVLEEVRVQSGKGFGFVRYNTHEEAAMAIQMANGRPVRGKTMKCSWG-SKPTPPGTASNP 351
Query: 158 L 158
L
Sbjct: 352 L 352
>Medtr3g109090.2 | nucleolysin TIAR-like protein | HC |
chr3:50426599-50437301 | 20130731
Length = 440
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 70/181 (38%), Gaps = 28/181 (15%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDK--HIIDGRTVEAKKAVP-----------RD 47
M D TGR++G+GFV F D A+ I D + R + A D
Sbjct: 177 MWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKIND 236
Query: 48 DQNTLNRQSGGVHGSPGTGRTKK---------IFVGGLPSTITESDFKNYFDQFGTITDV 98
QN + +G G ++VG LP +T+++ F G
Sbjct: 237 SQNAVVLTNGSSDGGQDNSNEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHALG----A 292
Query: 99 VVMYDHNTQRPRGFGFITYDS-EEAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSP 157
V+ + Q +GFGF+ Y++ EEA + + GK ++ K PG +P
Sbjct: 293 GVLEEVRVQSGKGFGFVRYNTHEEAAMAIQMANGRPVRGKTMKCSWG-SKPTPPGTASNP 351
Query: 158 L 158
L
Sbjct: 352 L 352
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 67 RTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITY----DSEEA 122
+++++FVG LP +++ S F + G + V ++YD T R RGF F+T D+EEA
Sbjct: 106 QSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEA 165
Query: 123 V 123
+
Sbjct: 166 I 166
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 67 RTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITY----DSEEA 122
+++++FVG LP +++ S F + G + V ++YD T R RGF F+T D+EEA
Sbjct: 106 QSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEA 165
Query: 123 V 123
+
Sbjct: 166 I 166
>Medtr6g477870.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr6:28646362-28643393 | 20130731
Length = 169
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 127
+++V GL TE +N F FG + DV ++ D RPRGF F+ Y +EE + +
Sbjct: 96 RLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAI 153
>Medtr4g122650.1 | flowering time control FCA-like protein | HC |
chr4:50587410-50576809 | 20130731
Length = 737
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 66 GRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDR 125
G K+FVG +P T TE D + F++ G + +V ++ D T + +G FI Y + E D+
Sbjct: 85 GNFAKLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQ 144
Query: 126 VL--FKTFHELNG 136
+ H L G
Sbjct: 145 AIRALHNRHTLPG 157
>Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253164 | 20130731
Length = 250
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSEEAV 123
KIFVGGL K YFDQFG I + VV+ D T + +G+GF+T+ D A+
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAI 81
>Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251226-42253109 | 20130731
Length = 251
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSEEAV 123
KIFVGGL K YFDQFG I + VV+ D T + +G+GF+T+ D A+
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAI 81
>Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374538-26375597 | 20130731
Length = 128
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV-DRVLF 128
+ FVGGL + F Q+G I D ++ D T R RGFGF+T+ +E+++ D +
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 129 KTFHELNGKMVEVKRA 144
+L+G+ + V +A
Sbjct: 67 MNGQDLDGRNITVNQA 82
>Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374412-26375716 | 20130731
Length = 161
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV-DRVLF 128
+ FVGGL + F Q+G I D ++ D T R RGFGF+T+ +E+++ D +
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 129 KTFHELNGKMVEVKRA 144
+L+G+ + V +A
Sbjct: 67 MNGQDLDGRNITVNQA 82
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 83/189 (43%), Gaps = 29/189 (15%)
Query: 3 DRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKA------VPRDDQNTLNRQS 56
DR T R+RGF FV A+ I + DG V + A VP+ + + Q
Sbjct: 143 DRLTDRSRGFAFVTMKSAEEAKEAI---RMFDGSQVGGRSAKVNFPEVPKGGERLVMGQK 199
Query: 57 -----GGVHGSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRG 111
G SP KI+ G L + D ++ FD+ + ++Y+ + R RG
Sbjct: 200 VRNSYRGFVDSP-----HKIYAGNLGWGMNSQDLRDAFDEQPGLLGAKIIYERDNGRSRG 254
Query: 112 FGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIR---SPLIGSYNYGLNR 168
FGF+T+++ E ++ L + +NG VEV+ P L+ R SP + N N
Sbjct: 255 FGFVTFETAEHLEAAL----NAMNG--VEVQ-GRPLRLNLAAARTSPSPPVIEENTKNNI 307
Query: 169 ASSYLNSYA 177
SS L S A
Sbjct: 308 ESSELVSSA 316
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 127
+++VG LP ++T S + F + GT+ V ++YD T R RGF F+T S E +
Sbjct: 110 RLYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEAI 167
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Query: 68 TKKIFVGGL--------PSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 119
T K+F+GG+ + E+ + F ++G + D ++ D T R RGFGFIT++S
Sbjct: 41 TTKLFIGGILHLSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNS 100
Query: 120 -EEAVDRVLFKTFHELNGKMVEVKRA 144
EEA + +L+G+ V V A
Sbjct: 101 VEEASSAIQALDGQDLHGRRVRVNYA 126
>Medtr5g023060.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:9164769-9167836 | 20130731
Length = 303
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 71 IFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFKT 130
++V GL S +TE D + +F + G + ++ + T+ RGF F+T D+ E +R + K
Sbjct: 133 LYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDTAEDANRCI-KY 191
Query: 131 FHE--LNGKMVEV---KRAVPKELSPG 152
++ L G+ + V KR P+ +PG
Sbjct: 192 LNQSILEGRYITVERSKRKRPRTPTPG 218
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+FVGGL TE + F +G + + V+ D +++ +G+GF+T+ S++ ++ + +
Sbjct: 33 KLFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITE 92
Query: 130 TFHE-LNGKMVEVKRAVP 146
+ LNG++V V A P
Sbjct: 93 MNEKALNGRVVFVDYAKP 110
>Medtr8g074790.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr8:31620260-31623626 | 20130731
Length = 270
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 71 IFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFKT 130
++V GL S +T+ D +++F + G + ++ + T+ RGF F+T DS E +R + K
Sbjct: 64 LYVTGLSSRVTDRDLEDHFSKEGKVASCFLVVEPRTRISRGFAFVTMDSHEDAERCI-KH 122
Query: 131 FHE--LNGKMVEVKRAVPKELSPGPIRSPLIGSYNYGLNRASSY 172
++ L G+ + V+R+ K R+P G Y GL Y
Sbjct: 123 LNQSVLEGRYITVERSRRKR-----ARTPTPGHY-LGLKNTRDY 160
>Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 17/149 (11%)
Query: 4 RATGRARGFGFVVFADPAVAE----RVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGV 59
+++ R RGF F+ + + A AE ++ +D A PR+ +++ + Q
Sbjct: 215 QSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAIVSWADPRNSESSSSSQ---- 270
Query: 60 HGSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 119
K ++V LP IT++ K F+ G IT V + Q +GF+ +
Sbjct: 271 --------VKAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFAD 322
Query: 120 EEAVDRVLFKTF-HELNGKMVEVKRAVPK 147
+ + L T +E+NG+ +E A P+
Sbjct: 323 RSSAMKALKNTEKYEINGQTLECSLAKPQ 351
>Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 17/149 (11%)
Query: 4 RATGRARGFGFVVFADPAVAE----RVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGV 59
+++ R RGF F+ + + A AE ++ +D A PR+ +++ + Q
Sbjct: 215 QSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAIVSWADPRNSESSSSSQ---- 270
Query: 60 HGSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 119
K ++V LP IT++ K F+ G IT V + Q +GF+ +
Sbjct: 271 --------VKAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFAD 322
Query: 120 EEAVDRVLFKTF-HELNGKMVEVKRAVPK 147
+ + L T +E+NG+ +E A P+
Sbjct: 323 RSSAMKALKNTEKYEINGQTLECSLAKPQ 351
>Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42488464-42483010 | 20130731
Length = 477
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 17/149 (11%)
Query: 4 RATGRARGFGFVVFADPAVAE----RVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGV 59
+++ R RGF F+ + + A AE ++ +D A PR+ +++ + Q
Sbjct: 215 QSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAIVSWADPRNSESSSSSQ---- 270
Query: 60 HGSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 119
K ++V LP IT++ K F+ G IT V + Q +GF+ +
Sbjct: 271 --------VKAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFAD 322
Query: 120 EEAVDRVLFKTF-HELNGKMVEVKRAVPK 147
+ + L T +E+NG+ +E A P+
Sbjct: 323 RSSAMKALKNTEKYEINGQTLECSLAKPQ 351
>Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 17/149 (11%)
Query: 4 RATGRARGFGFVVFADPAVAE----RVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGV 59
+++ R RGF F+ + + A AE ++ +D A PR+ +++ + Q
Sbjct: 215 QSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAIVSWADPRNSESSSSSQ---- 270
Query: 60 HGSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 119
K ++V LP IT++ K F+ G IT V + Q +GF+ +
Sbjct: 271 --------VKAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFAD 322
Query: 120 EEAVDRVLFKTF-HELNGKMVEVKRAVPK 147
+ + L T +E+NG+ +E A P+
Sbjct: 323 RSSAMKALKNTEKYEINGQTLECSLAKPQ 351
>Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:23466507-23467712 | 20130731
Length = 112
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+F+ GL E+ ++ F+Q G I +V V+ +H T +G+GF+ ++SE A
Sbjct: 34 KLFIAGLSYNTNETVLRDTFEQHGQIIEVKVICNHRTGESKGYGFVRFNSETAAA----T 89
Query: 130 TFHELNGKMVEVKR 143
EL+G++V+ +R
Sbjct: 90 ARKELHGQIVDGRR 103
>Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961794-37963766 | 20130731
Length = 105
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 68 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 127
+ K+F+GGL + + ++ F +G + + V+ D T R RGFGF+ + SEE+ L
Sbjct: 35 SSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL 94
>Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like
protein | HC | chr5:19719748-19722666 | 20130731
Length = 170
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 71 IFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITY----DSEEAVDRV 126
++VGGL + ES F FG I DV D TQ+ R FGF+T+ D+ A+D +
Sbjct: 12 LYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDASAAMDNM 71
Query: 127 LFKTFHELNGKMVEVKRAVPKELSPG 152
EL G+++ V A+P+++ G
Sbjct: 72 ---DGAELYGRVLTVNYALPEKIKGG 94
>Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:52075123-52071412 | 20130731
Length = 490
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 127
K++VGG+P +E D +YF+ GTIT++ M +T + RG I++ +E A R L
Sbjct: 221 KVYVGGIPYYSSEDDIHSYFEGCGTITEINCMTFPDTGKFRGIAIISFKTEAAAKRAL 278
>Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
++FVGGL TE D + F + G +T+V +M + T++ +GF F+ +++ E R + +
Sbjct: 216 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 275
Query: 130 TFHE-LNGKMVEV 141
+ +NGK V
Sbjct: 276 LKNPVINGKQCGV 288
>Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
++FVGGL TE D + F + G +T+V +M + T++ +GF F+ +++ E R + +
Sbjct: 216 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 275
Query: 130 TFHE-LNGKMVEV 141
+ +NGK V
Sbjct: 276 LKNPVINGKQCGV 288
>Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
++FVGGL TE D + F + G +T+V +M + T++ +GF F+ +++ E R + +
Sbjct: 215 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 274
Query: 130 TFHE-LNGKMVEV 141
+ +NGK V
Sbjct: 275 LKNPVINGKQCGV 287
>Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
++FVGGL TE D + F + G +T+V +M + T++ +GF F+ +++ E R + +
Sbjct: 215 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 274
Query: 130 TFHE-LNGKMVEV 141
+ +NGK V
Sbjct: 275 LKNPVINGKQCGV 287
>Medtr3g102040.1 | polyadenylate-binding protein | HC |
chr3:47012095-47003272 | 20130731
Length = 622
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 9/113 (7%)
Query: 5 ATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVHGSPG 64
A+G ++G+GFV F + A+ I DK ++G + K Q +R +
Sbjct: 147 ASGLSKGYGFVQFENEESAQSAI-DK--LNGMLLNDKPVYVGHFQRKQDRDNAL-----S 198
Query: 65 TGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITY 117
+ ++V L ++T+ D KN F ++GTIT VVM D + + + FGF+ +
Sbjct: 199 NAKFNNVYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVDG-KSKCFGFVNF 250
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 17/135 (12%)
Query: 7 GRARGFGFVVFADPAVAERVI--VDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVHGSPG 64
G+++G+GFV F + A+ I +D +I+ + V V ++ N GSP
Sbjct: 155 GQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYVGFFVRHQERARTN-------GSP- 206
Query: 65 TGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 124
+ ++V + T+ D K F FG IT VM D N + R FGF+ + S ++
Sbjct: 207 --KFTNVYVKNISEASTDEDLKQLFGPFGMITSATVMKDANG-KSRCFGFVNFQSPDSAA 263
Query: 125 RVLFKTFHELNGKMV 139
+ K LNG +
Sbjct: 264 AAVEK----LNGTAI 274
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 17/135 (12%)
Query: 7 GRARGFGFVVFADPAVAERVI--VDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVHGSPG 64
G+++G+GFV F + A+ I +D +I+ + V V ++ N GSP
Sbjct: 155 GQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYVGFFVRHQERARTN-------GSP- 206
Query: 65 TGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 124
+ ++V + T+ D K F FG IT VM D N + R FGF+ + S ++
Sbjct: 207 --KFTNVYVKNISEASTDEDLKQLFGPFGMITSATVMKDANG-KSRCFGFVNFQSPDSAA 263
Query: 125 RVLFKTFHELNGKMV 139
+ K LNG +
Sbjct: 264 AAVEK----LNGTAI 274
>Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26418780-26419998 | 20130731
Length = 164
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV-DRVLF 128
+ FVGGL + F Q+G I D ++ D T R RGFGF+T+ E+++ D +
Sbjct: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
Query: 129 KTFHELNGKMVEVKRA 144
+++G+ + V A
Sbjct: 69 MNGQDMDGRNITVNEA 84