Miyakogusa Predicted Gene
- Lj2g3v3234600.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v3234600.1 Non Characterized Hit- tr|F6HZN8|F6HZN8_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,45.57,0.0000000000001,RNA-binding domain, RBD,NULL; SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,NULL; RNA recognition motif,CUFF.39940.1
(445 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 571 e-163
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 565 e-161
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 421 e-118
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 419 e-117
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 376 e-104
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 376 e-104
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 376 e-104
Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 307 1e-83
Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 208 1e-53
Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 208 1e-53
Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 156 3e-38
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 143 3e-34
Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 124 2e-28
Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 104 1e-22
Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 104 1e-22
Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 104 1e-22
Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 104 1e-22
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 65 1e-10
Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |... 62 8e-10
Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 2e-09
Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 1e-08
Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 1e-08
Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 2e-08
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 4e-08
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 4e-08
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 5e-08
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 5e-08
Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 56 8e-08
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 8e-08
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 8e-08
Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 56 8e-08
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 9e-08
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 1e-07
Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC | ch... 55 2e-07
Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 2e-07
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch... 54 3e-07
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 3e-07
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 3e-07
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 4e-07
Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 5e-07
Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 5e-07
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 53 5e-07
Medtr3g462330.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 6e-07
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-... 52 1e-06
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-... 52 1e-06
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-... 52 1e-06
Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 1e-06
Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 1e-06
Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 1e-06
Medtr4g122650.1 | flowering time control FCA-like protein | HC |... 52 1e-06
Medtr5g023060.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 1e-06
Medtr8g074790.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 1e-06
Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 2e-06
Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 2e-06
Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 2e-06
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 52 2e-06
Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC | ch... 52 2e-06
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 51 2e-06
Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 2e-06
Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 2e-06
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 2e-06
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-... 51 2e-06
Medtr7g094670.1 | mRNA capping enzyme, putative | LC | chr7:3777... 51 2e-06
Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 3e-06
Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 3e-06
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 50 3e-06
Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |... 50 3e-06
Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |... 50 3e-06
Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |... 50 4e-06
Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |... 50 4e-06
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 4e-06
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 4e-06
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch... 50 4e-06
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 4e-06
Medtr6g477870.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 4e-06
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 50 5e-06
Medtr3g109090.1 | nucleolysin TIAR-like protein | HC | chr3:5042... 50 5e-06
Medtr3g109090.2 | nucleolysin TIAR-like protein | HC | chr3:5042... 50 5e-06
Medtr3g109090.3 | nucleolysin TIAR-like protein | HC | chr3:5042... 50 5e-06
Medtr1g048080.1 | pentatricopeptide (PPR) repeat protein | HC | ... 50 6e-06
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 49 7e-06
Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 9e-06
Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 9e-06
Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 9e-06
Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 9e-06
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 49 1e-05
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 571 bits (1472), Expect = e-163, Method: Compositional matrix adjust.
Identities = 314/450 (69%), Positives = 346/450 (76%), Gaps = 11/450 (2%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGSVH 60
MRDRATGRARGFGFVVF+DPAVAERVI+DKHIIDGRTVEAKKAVPRDDQ +NRQ+GSV
Sbjct: 38 MRDRATGRARGFGFVVFSDPAVAERVIIDKHIIDGRTVEAKKAVPRDDQQNINRQTGSVQ 97
Query: 61 GSPGPGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 120
GSPGPGRTKKIFVGGLPSTITESDFK YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE
Sbjct: 98 GSPGPGRTKKIFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 157
Query: 121 EAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPLIGSYNYGLN-RASSYLNSYAQG 179
EAVDRVL+KTFHELNGKMVEVKRAVPKELSPGP RSPLIG NY LN RASSYLN+Y QG
Sbjct: 158 EAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPTRSPLIGYNNYSLNSRASSYLNNYGQG 217
Query: 180 FNMNPVGGLGVRMDGRFSLNPLTTSRGGLTPFGSSGYGMGVNLDSGLNLNPSYGGTSNYG 239
++M+P+GG GVRMDGRFS PLT R G TPFG++GYGMG+NL+SG L+P++GG SN+G
Sbjct: 218 YSMSPIGGFGVRMDGRFS--PLTGGRTGFTPFGNTGYGMGMNLESG--LSPNFGGNSNFG 273
Query: 240 GNLGYSRI-SPFYNSNSSRYTTPIGYSGGNVRSDSLMNSPSRNVWGNGDLNSTSNNQASP 298
NLGY RI SPFY+ NSSRY TPIGY+GGN R DSLMNS SRNVWGNG L S +NN SP
Sbjct: 274 NNLGYGRIFSPFYSGNSSRYATPIGYNGGNGRGDSLMNSTSRNVWGNGGL-SNANNPVSP 332
Query: 299 GGAYLGSGSGAFGVSIGNSGASWGQSVPNQXXXXXXXXXXXXXXXEXXXXXXXXXXXXXX 358
GA+LGSG GAFGVSIGNSG +WG ++ Q E
Sbjct: 333 -GAFLGSGGGAFGVSIGNSGTNWGAAIQGQGGGAASGYATGNNVYEGGDSSFGLGGVGYG 391
Query: 359 XXXXXVPQ-SSTFTAPTGGYEGSYGDLYR--NGSFYSDSTWRSGASEIDXXXXXXXXXXX 415
V SSTF A GGY+GSYGDLYR +GS Y+DS WRS SEID
Sbjct: 392 RNSNAVANPSSTFNASAGGYDGSYGDLYRSGSGSVYNDSAWRSATSEIDGSGSFSYGLGG 451
Query: 416 XXXEDLVKSSDDLNGNYNVASRQSNRGIAA 445
+D VK+S+ G+YNVASRQ NRGIAA
Sbjct: 452 IASDDPVKTSEGYIGSYNVASRQPNRGIAA 481
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 14/103 (13%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+F+GG+ E K YF +G + + V+M D T R RGFGF+ + +RV+
Sbjct: 7 KLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVIID 66
Query: 130 TFHELNGKMVEVKRAVPK-------------ELSPGPIRSPLI 159
H ++G+ VE K+AVP+ + SPGP R+ I
Sbjct: 67 K-HIIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTKKI 108
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 565 bits (1455), Expect = e-161, Method: Compositional matrix adjust.
Identities = 311/447 (69%), Positives = 343/447 (76%), Gaps = 11/447 (2%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGSVH 60
MRDRATGRARGFGFVVF+DPAVAERVI+DKHIIDGRTVEAKKAVPRDDQ +NRQ+GSV
Sbjct: 38 MRDRATGRARGFGFVVFSDPAVAERVIIDKHIIDGRTVEAKKAVPRDDQQNINRQTGSVQ 97
Query: 61 GSPGPGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 120
GSPGPGRTKKIFVGGLPSTITESDFK YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE
Sbjct: 98 GSPGPGRTKKIFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 157
Query: 121 EAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPLIGSYNYGLN-RASSYLNSYAQG 179
EAVDRVL+KTFHELNGKMVEVKRAVPKELSPGP RSPLIG NY LN RASSYLN+Y QG
Sbjct: 158 EAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPTRSPLIGYNNYSLNSRASSYLNNYGQG 217
Query: 180 FNMNPVGGLGVRMDGRFSLNPLTTSRGGLTPFGSSGYGMGVNLDSGLNLNPSYGGTSNYG 239
++M+P+GG GVRMDGRFS PLT R G TPFG++GYGMG+NL+SG L+P++GG SN+G
Sbjct: 218 YSMSPIGGFGVRMDGRFS--PLTGGRTGFTPFGNTGYGMGMNLESG--LSPNFGGNSNFG 273
Query: 240 GNLGYSRI-SPFYNSNSSRYTTPIGYSGGNVRSDSLMNSPSRNVWGNGDLNSTSNNQASP 298
NLGY RI SPFY+ NSSRY TPIGY+GGN R DSLMNS SRNVWGNG L S +NN SP
Sbjct: 274 NNLGYGRIFSPFYSGNSSRYATPIGYNGGNGRGDSLMNSTSRNVWGNGGL-SNANNPVSP 332
Query: 299 GGAYLGSGSGAFGVSIGNSGASWGQSVPNQXXXXXXXXXXXXXXXEXXXXXXXXXXXXXX 358
GA+LGSG GAFGVSIGNSG +WG ++ Q E
Sbjct: 333 -GAFLGSGGGAFGVSIGNSGTNWGAAIQGQGGGAASGYATGNNVYEGGDSSFGLGGVGYG 391
Query: 359 XXXXXVPQ-SSTFTAPTGGYEGSYGDLYR--NGSFYSDSTWRSGASEIDXXXXXXXXXXX 415
V SSTF A GGY+GSYGDLYR +GS Y+DS WRS SEID
Sbjct: 392 RNSNAVANPSSTFNASAGGYDGSYGDLYRSGSGSVYNDSAWRSATSEIDGSGSFSYGLGG 451
Query: 416 XXXEDLVKSSDDLNGNYNVASRQSNRG 442
+D VK+S+ G+YNVASRQ NRG
Sbjct: 452 IASDDPVKTSEGYIGSYNVASRQPNRG 478
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 14/103 (13%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+F+GG+ E K YF +G + + V+M D T R RGFGF+ + +RV+
Sbjct: 7 KLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVIID 66
Query: 130 TFHELNGKMVEVKRAVPK-------------ELSPGPIRSPLI 159
H ++G+ VE K+AVP+ + SPGP R+ I
Sbjct: 67 K-HIIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTKKI 108
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 421 bits (1083), Expect = e-118, Method: Compositional matrix adjust.
Identities = 242/450 (53%), Positives = 293/450 (65%), Gaps = 17/450 (3%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGSVH 60
M+DR TGRARGFGFVVF DPAVA+ V+ +KH IDGR VEAKKAVPRDDQN L+R SGS+H
Sbjct: 38 MKDRTTGRARGFGFVVFIDPAVADIVVQEKHNIDGRMVEAKKAVPRDDQNVLSRTSGSIH 97
Query: 61 GSPGPGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 120
GSPGPGRT+KIFVGGL ST+TESDFK YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE
Sbjct: 98 GSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 157
Query: 121 EAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPLIGSYNYGLNRASSYLNSYAQGF 180
EAVD+VL KTFHELNGKMVEVKRAVPKELSPGP RSPL G YNYGL+R +S+LN + Q +
Sbjct: 158 EAVDQVLLKTFHELNGKMVEVKRAVPKELSPGPARSPLSG-YNYGLSRVNSFLNGFNQSY 216
Query: 181 NMNPVGGLGVRMDGRFSLNPLTTSRGGLTPFGSSGYGMGVNLDSGLNLNPSYGGTSNYGG 240
+ + VGG G+R+DGRFS P+ R PFG SGYGMG+N + G L+P +GG +++ G
Sbjct: 217 SPSTVGGYGLRVDGRFS--PVAGGRNAYAPFG-SGYGMGMNFEPG--LSPGFGGNASFNG 271
Query: 241 NLGYSR-ISPFYNSNSSRYTTPIGYSGGNVRSDSLMNSPSRNVWGNGDLN---STSNNQA 296
NL Y R ++P++ S+R+ +P+GY GN S+S +S +RN+WGNG LN S++N+ A
Sbjct: 272 NLSYGRGLNPYFIGGSNRFGSPVGYESGNGGSNSFFSSVTRNLWGNGSLNYGTSSANSNA 331
Query: 297 SPGGAYLGSGSGAFGVSIGNSGASWGQSVPNQXXXXXXXXXXXXXXXEXXXXXXXXXXXX 356
G G AF GN+G +W S +
Sbjct: 332 YIGSGSGNVGGNAF----GNTGVNWSSSPISGHGGGNNVSQGSGNLGYGGGNNGYGLGTE 387
Query: 357 ---XXXXXXXVPQSSTFTAPTGGYEGSYGDLYRNGSFYSDSTWRSGASEIDXXXXXXXXX 413
P SS T+ GG +G++ D Y N S Y D+TWRS SE D
Sbjct: 388 GYGRSSGSTLAPTSSYSTSNGGGVDGAFADFYNNNSVYGDTTWRSSNSERDGSGPFGYGL 447
Query: 414 XXXXXEDLVKSSDDLNGNYNVASRQSNRGI 443
+ K+S G Y V RQ NRGI
Sbjct: 448 GGAPSDVSAKTSPGYVGGYTVNKRQPNRGI 477
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+F+GG+ E + YF +G + + V+M D T R RGFGF+ + + AV ++ +
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVF-IDPAVADIVVQ 65
Query: 130 TFHELNGKMVEVKRAVPKE 148
H ++G+MVE K+AVP++
Sbjct: 66 EKHNIDGRMVEAKKAVPRD 84
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 419 bits (1078), Expect = e-117, Method: Compositional matrix adjust.
Identities = 241/449 (53%), Positives = 292/449 (65%), Gaps = 17/449 (3%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGSVH 60
M+DR TGRARGFGFVVF DPAVA+ V+ +KH IDGR VEAKKAVPRDDQN L+R SGS+H
Sbjct: 38 MKDRTTGRARGFGFVVFIDPAVADIVVQEKHNIDGRMVEAKKAVPRDDQNVLSRTSGSIH 97
Query: 61 GSPGPGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 120
GSPGPGRT+KIFVGGL ST+TESDFK YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE
Sbjct: 98 GSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 157
Query: 121 EAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPLIGSYNYGLNRASSYLNSYAQGF 180
EAVD+VL KTFHELNGKMVEVKRAVPKELSPGP RSPL G YNYGL+R +S+LN + Q +
Sbjct: 158 EAVDQVLLKTFHELNGKMVEVKRAVPKELSPGPARSPLSG-YNYGLSRVNSFLNGFNQSY 216
Query: 181 NMNPVGGLGVRMDGRFSLNPLTTSRGGLTPFGSSGYGMGVNLDSGLNLNPSYGGTSNYGG 240
+ + VGG G+R+DGRFS P+ R PFG SGYGMG+N + G L+P +GG +++ G
Sbjct: 217 SPSTVGGYGLRVDGRFS--PVAGGRNAYAPFG-SGYGMGMNFEPG--LSPGFGGNASFNG 271
Query: 241 NLGYSR-ISPFYNSNSSRYTTPIGYSGGNVRSDSLMNSPSRNVWGNGDLN---STSNNQA 296
NL Y R ++P++ S+R+ +P+GY GN S+S +S +RN+WGNG LN S++N+ A
Sbjct: 272 NLSYGRGLNPYFIGGSNRFGSPVGYESGNGGSNSFFSSVTRNLWGNGSLNYGTSSANSNA 331
Query: 297 SPGGAYLGSGSGAFGVSIGNSGASWGQSVPNQXXXXXXXXXXXXXXXEXXXXXXXXXXXX 356
G G AF GN+G +W S +
Sbjct: 332 YIGSGSGNVGGNAF----GNTGVNWSSSPISGHGGGNNVSQGSGNLGYGGGNNGYGLGTE 387
Query: 357 ---XXXXXXXVPQSSTFTAPTGGYEGSYGDLYRNGSFYSDSTWRSGASEIDXXXXXXXXX 413
P SS T+ GG +G++ D Y N S Y D+TWRS SE D
Sbjct: 388 GYGRSSGSTLAPTSSYSTSNGGGVDGAFADFYNNNSVYGDTTWRSSNSERDGSGPFGYGL 447
Query: 414 XXXXXEDLVKSSDDLNGNYNVASRQSNRG 442
+ K+S G Y V RQ NRG
Sbjct: 448 GGAPSDVSAKTSPGYVGGYTVNKRQPNRG 476
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+F+GG+ E + YF +G + + V+M D T R RGFGF+ + + AV ++ +
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVF-IDPAVADIVVQ 65
Query: 130 TFHELNGKMVEVKRAVPKE 148
H ++G+MVE K+AVP++
Sbjct: 66 EKHNIDGRMVEAKKAVPRD 84
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 376 bits (965), Expect = e-104, Method: Compositional matrix adjust.
Identities = 228/455 (50%), Positives = 286/455 (62%), Gaps = 19/455 (4%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGSVH 60
M+DR TGRARGFGFVVFADP+VAERV+++KH+IDGRTVEAKKAVPRDDQN R + S H
Sbjct: 36 MKDRTTGRARGFGFVVFADPSVAERVVMEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSH 95
Query: 61 GSPGPG--RTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYD 118
GSP P RTKKIFVGGL ST+TESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYD
Sbjct: 96 GSPAPTPIRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYD 155
Query: 119 SEEAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPLIGSYNYG-LNRASSYLNSYA 177
SEEAV++VL KTFHELNGKMVEVKRAVPK+LSP P R L G ++YG ++R S+ N +A
Sbjct: 156 SEEAVEKVLHKTFHELNGKMVEVKRAVPKDLSPSPSRGQL-GGFSYGTMSRVGSFSNGFA 214
Query: 178 QGFNMNPVGGLGVRMDGRFSLNPLTTSRGGLTPFGSSGYGMGVNLDSGLNLNPSYGGTSN 237
QG+N + +GG G+R+DGR L+P R G + F S YG G+N + LN N + TSN
Sbjct: 215 QGYNPSLIGGHGLRLDGR--LSPANVGRSGYSLF-SPSYGTGLNFEPPLNQNENENFTSN 271
Query: 238 YGGNLGYSRISPFYNSNSSRYTTPIGYSGG-NVRSDSLMNSPSRNVWGNGDLNSTSNNQA 296
+ +G + SP Y+++ SRY + Y+ G NV + S ++S ++++WGNG+LN +N +
Sbjct: 272 F--IMGRALSSP-YSASPSRYNNAMAYAAGSNVGNSSAISSTNQSLWGNGNLNYANNPAS 328
Query: 297 SPGGAYLGSGSGAFGV-SIGNSGASWGQSV--PNQXXXXXXXXXXXXXXXEX-XXXXXXX 352
S A+LG GS + S GN G+ W SV NQ
Sbjct: 329 SD--AFLGYGSENSSIGSFGNIGSLWSTSVGAANQAGTIGSGYGKSSLNYRLGDVILGSK 386
Query: 353 XXXXXXXXXXXVPQSSTFTAPTGGYEGSYGDLYRNGSFYSDSTWRSGASEIDXXXXXXXX 412
V S++ G Y +Y + G FY D TWR SE++
Sbjct: 387 AVGYGKNSESNVESDSSYAFSNGSYGEAYKSTFEAGPFYQDHTWRPTTSELEDSGPLSFG 446
Query: 413 XXXXXXEDLVKSSD--DLNGNYNVASRQSNRGIAA 445
+ + KSS + VA+RQSNRGIAA
Sbjct: 447 LENAVSDLMRKSSSSGHIGAYAAVANRQSNRGIAA 481
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+F+GG+ E + YF FG + + V+M D T R RGFGF+ + +RV+ +
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 130 TFHELNGKMVEVKRAVPKE 148
H ++G+ VE K+AVP++
Sbjct: 65 K-HVIDGRTVEAKKAVPRD 82
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 376 bits (965), Expect = e-104, Method: Compositional matrix adjust.
Identities = 228/455 (50%), Positives = 286/455 (62%), Gaps = 19/455 (4%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGSVH 60
M+DR TGRARGFGFVVFADP+VAERV+++KH+IDGRTVEAKKAVPRDDQN R + S H
Sbjct: 36 MKDRTTGRARGFGFVVFADPSVAERVVMEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSH 95
Query: 61 GSPGPG--RTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYD 118
GSP P RTKKIFVGGL ST+TESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYD
Sbjct: 96 GSPAPTPIRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYD 155
Query: 119 SEEAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPLIGSYNYG-LNRASSYLNSYA 177
SEEAV++VL KTFHELNGKMVEVKRAVPK+LSP P R L G ++YG ++R S+ N +A
Sbjct: 156 SEEAVEKVLHKTFHELNGKMVEVKRAVPKDLSPSPSRGQL-GGFSYGTMSRVGSFSNGFA 214
Query: 178 QGFNMNPVGGLGVRMDGRFSLNPLTTSRGGLTPFGSSGYGMGVNLDSGLNLNPSYGGTSN 237
QG+N + +GG G+R+DGR L+P R G + F S YG G+N + LN N + TSN
Sbjct: 215 QGYNPSLIGGHGLRLDGR--LSPANVGRSGYSLF-SPSYGTGLNFEPPLNQNENENFTSN 271
Query: 238 YGGNLGYSRISPFYNSNSSRYTTPIGYSGG-NVRSDSLMNSPSRNVWGNGDLNSTSNNQA 296
+ +G + SP Y+++ SRY + Y+ G NV + S ++S ++++WGNG+LN +N +
Sbjct: 272 F--IMGRALSSP-YSASPSRYNNAMAYAAGSNVGNSSAISSTNQSLWGNGNLNYANNPAS 328
Query: 297 SPGGAYLGSGSGAFGV-SIGNSGASWGQSV--PNQXXXXXXXXXXXXXXXEX-XXXXXXX 352
S A+LG GS + S GN G+ W SV NQ
Sbjct: 329 SD--AFLGYGSENSSIGSFGNIGSLWSTSVGAANQAGTIGSGYGKSSLNYRLGDVILGSK 386
Query: 353 XXXXXXXXXXXVPQSSTFTAPTGGYEGSYGDLYRNGSFYSDSTWRSGASEIDXXXXXXXX 412
V S++ G Y +Y + G FY D TWR SE++
Sbjct: 387 AVGYGKNSESNVESDSSYAFSNGSYGEAYKSTFEAGPFYQDHTWRPTTSELEDSGPLSFG 446
Query: 413 XXXXXXEDLVKSSD--DLNGNYNVASRQSNRGIAA 445
+ + KSS + VA+RQSNRGIAA
Sbjct: 447 LENAVSDLMRKSSSSGHIGAYAAVANRQSNRGIAA 481
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+F+GG+ E + YF FG + + V+M D T R RGFGF+ + +RV+ +
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 130 TFHELNGKMVEVKRAVPKE 148
H ++G+ VE K+AVP++
Sbjct: 65 K-HVIDGRTVEAKKAVPRD 82
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 376 bits (965), Expect = e-104, Method: Compositional matrix adjust.
Identities = 228/455 (50%), Positives = 286/455 (62%), Gaps = 19/455 (4%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGSVH 60
M+DR TGRARGFGFVVFADP+VAERV+++KH+IDGRTVEAKKAVPRDDQN R + S H
Sbjct: 36 MKDRTTGRARGFGFVVFADPSVAERVVMEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSH 95
Query: 61 GSPGPG--RTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYD 118
GSP P RTKKIFVGGL ST+TESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYD
Sbjct: 96 GSPAPTPIRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYD 155
Query: 119 SEEAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPLIGSYNYG-LNRASSYLNSYA 177
SEEAV++VL KTFHELNGKMVEVKRAVPK+LSP P R L G ++YG ++R S+ N +A
Sbjct: 156 SEEAVEKVLHKTFHELNGKMVEVKRAVPKDLSPSPSRGQL-GGFSYGTMSRVGSFSNGFA 214
Query: 178 QGFNMNPVGGLGVRMDGRFSLNPLTTSRGGLTPFGSSGYGMGVNLDSGLNLNPSYGGTSN 237
QG+N + +GG G+R+DGR L+P R G + F S YG G+N + LN N + TSN
Sbjct: 215 QGYNPSLIGGHGLRLDGR--LSPANVGRSGYSLF-SPSYGTGLNFEPPLNQNENENFTSN 271
Query: 238 YGGNLGYSRISPFYNSNSSRYTTPIGYSGG-NVRSDSLMNSPSRNVWGNGDLNSTSNNQA 296
+ +G + SP Y+++ SRY + Y+ G NV + S ++S ++++WGNG+LN +N +
Sbjct: 272 F--IMGRALSSP-YSASPSRYNNAMAYAAGSNVGNSSAISSTNQSLWGNGNLNYANNPAS 328
Query: 297 SPGGAYLGSGSGAFGV-SIGNSGASWGQSV--PNQXXXXXXXXXXXXXXXEX-XXXXXXX 352
S A+LG GS + S GN G+ W SV NQ
Sbjct: 329 SD--AFLGYGSENSSIGSFGNIGSLWSTSVGAANQAGTIGSGYGKSSLNYRLGDVILGSK 386
Query: 353 XXXXXXXXXXXVPQSSTFTAPTGGYEGSYGDLYRNGSFYSDSTWRSGASEIDXXXXXXXX 412
V S++ G Y +Y + G FY D TWR SE++
Sbjct: 387 AVGYGKNSESNVESDSSYAFSNGSYGEAYKSTFEAGPFYQDHTWRPTTSELEDSGPLSFG 446
Query: 413 XXXXXXEDLVKSSD--DLNGNYNVASRQSNRGIAA 445
+ + KSS + VA+RQSNRGIAA
Sbjct: 447 LENAVSDLMRKSSSSGHIGAYAAVANRQSNRGIAA 481
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+F+GG+ E + YF FG + + V+M D T R RGFGF+ + +RV+ +
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 130 TFHELNGKMVEVKRAVPKE 148
H ++G+ VE K+AVP++
Sbjct: 65 K-HVIDGRTVEAKKAVPRD 82
>Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9464335-9461370 | 20130731
Length = 411
Score = 307 bits (787), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 200/418 (47%), Positives = 251/418 (60%), Gaps = 19/418 (4%)
Query: 38 VEAKKAVPRDDQNTLNRQSGSVHGSPGPG--RTKKIFVGGLPSTITESDFKNYFDQFGTI 95
VEAKKAVPRDDQN R + S HGSP P RTKKIFVGGL ST+TESDFKNYFDQFGTI
Sbjct: 3 VEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDFKNYFDQFGTI 62
Query: 96 TDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIR 155
TDVVVMYDHNTQRPRGFGFITYDSEEAV++VL KTFHELNGKMVEVKRAVPK+LSP P R
Sbjct: 63 TDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKRAVPKDLSPSPSR 122
Query: 156 SPLIGSYNYG-LNRASSYLNSYAQGFNMNPVGGLGVRMDGRFSLNPLTTSRGGLTPFGSS 214
L G ++YG ++R S+ N +AQG+N + +GG G+R+DGR L+P R G + F S
Sbjct: 123 GQL-GGFSYGTMSRVGSFSNGFAQGYNPSLIGGHGLRLDGR--LSPANVGRSGYSLF-SP 178
Query: 215 GYGMGVNLDSGLNLNPSYGGTSNYGGNLGYSRISPFYNSNSSRYTTPIGYSGG-NVRSDS 273
YG G+N + LN N + TSN+ +G + SP Y+++ SRY + Y+ G NV + S
Sbjct: 179 SYGTGLNFEPPLNQNENENFTSNF--IMGRALSSP-YSASPSRYNNAMAYAAGSNVGNSS 235
Query: 274 LMNSPSRNVWGNGDLNSTSNNQASPGGAYLGSGSGAFGV-SIGNSGASWGQSV--PNQXX 330
++S ++++WGNG+LN +NN AS A+LG GS + S GN G+ W SV NQ
Sbjct: 236 AISSTNQSLWGNGNLN-YANNPAS-SDAFLGYGSENSSIGSFGNIGSLWSTSVGAANQAG 293
Query: 331 XXXXXXXXXXXXXEX-XXXXXXXXXXXXXXXXXXVPQSSTFTAPTGGYEGSYGDLYRNGS 389
V S++ G Y +Y + G
Sbjct: 294 TIGSGYGKSSLNYRLGDVILGSKAVGYGKNSESNVESDSSYAFSNGSYGEAYKSTFEAGP 353
Query: 390 FYSDSTWRSGASEIDXXXXXXXXXXXXXXEDLVKSSD--DLNGNYNVASRQSNRGIAA 445
FY D TWR SE++ + + KSS + VA+RQSNRGIAA
Sbjct: 354 FYQDHTWRPTTSELEDSGPLSFGLENAVSDLMRKSSSSGHIGAYAAVANRQSNRGIAA 411
>Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 208 bits (529), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 116/222 (52%), Positives = 146/222 (65%), Gaps = 13/222 (5%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGSVH 60
MR++ TG+ RGFGFVVF+DP+V +RV+ DKH+IDGRTV+AK+A R+DQ
Sbjct: 38 MREKNTGKPRGFGFVVFSDPSVLDRVLEDKHVIDGRTVDAKRAFSREDQQISVSSRSGNS 97
Query: 61 ------GSPGPGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGF 114
G+ G RTKKIFVGGLP T+ E F+ YF+ +G +TDVVVMYD NT RPRGFGF
Sbjct: 98 NSGMNSGNGGNMRTKKIFVGGLPPTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGF 157
Query: 115 ITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPLIGSYNYGLNRASSYLN 174
IT+D+EEAVDRVL KTFH+LNGK VEVKRA+PK+ +PG + +G G Y
Sbjct: 158 ITFDTEEAVDRVLHKTFHDLNGKQVEVKRALPKDANPGA--NSRMGGAGGGSGGMGGYQG 215
Query: 175 SYAQGFNMNPVGGLGVRMDGRFSLNPLTTSRGGLTPFGSSGY 216
A G N N G R D R+ + P + + GG P+GSS Y
Sbjct: 216 YGASGGNQNAYDG---RSDSRY-MQPQSAA-GGFPPYGSSAY 252
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+F+GG+ E K +F +G + + VM + NT +PRGFGF+ + +DRVL +
Sbjct: 7 KLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVL-E 65
Query: 130 TFHELNGKMVEVKRAVPKE 148
H ++G+ V+ KRA +E
Sbjct: 66 DKHVIDGRTVDAKRAFSRE 84
>Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 208 bits (529), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 116/222 (52%), Positives = 146/222 (65%), Gaps = 13/222 (5%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGSVH 60
MR++ TG+ RGFGFVVF+DP+V +RV+ DKH+IDGRTV+AK+A R+DQ
Sbjct: 38 MREKNTGKPRGFGFVVFSDPSVLDRVLEDKHVIDGRTVDAKRAFSREDQQISVSSRSGNS 97
Query: 61 ------GSPGPGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGF 114
G+ G RTKKIFVGGLP T+ E F+ YF+ +G +TDVVVMYD NT RPRGFGF
Sbjct: 98 NSGMNSGNGGNMRTKKIFVGGLPPTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGF 157
Query: 115 ITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPLIGSYNYGLNRASSYLN 174
IT+D+EEAVDRVL KTFH+LNGK VEVKRA+PK+ +PG + +G G Y
Sbjct: 158 ITFDTEEAVDRVLHKTFHDLNGKQVEVKRALPKDANPGA--NSRMGGAGGGSGGMGGYQG 215
Query: 175 SYAQGFNMNPVGGLGVRMDGRFSLNPLTTSRGGLTPFGSSGY 216
A G N N G R D R+ + P + + GG P+GSS Y
Sbjct: 216 YGASGGNQNAYDG---RSDSRY-MQPQSAA-GGFPPYGSSAY 252
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+F+GG+ E K +F +G + + VM + NT +PRGFGF+ + +DRVL +
Sbjct: 7 KLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVL-E 65
Query: 130 TFHELNGKMVEVKRAVPKE 148
H ++G+ V+ KRA +E
Sbjct: 66 DKHVIDGRTVDAKRAFSRE 84
>Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:47715877-47717644 | 20130731
Length = 371
Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 82/154 (53%), Positives = 104/154 (67%), Gaps = 9/154 (5%)
Query: 3 DRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTL--------NR 54
DR T RGFGFV F+D + A + D H I GR VE +KA+PR +Q N
Sbjct: 44 DRTTRIPRGFGFVTFSDISSAHNALQDTHAILGRKVEVRKAIPRSEQLQQNQLQNRGGNS 103
Query: 55 QSGSVHGSPGPGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGF 114
SG G+ RTKKIFVGGLP+ ++ +FK YF++FG ITDVVVM D T RPRGFGF
Sbjct: 104 YSGYECGNEHI-RTKKIFVGGLPANMSVEEFKRYFERFGRITDVVVMQDSLTHRPRGFGF 162
Query: 115 ITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKE 148
IT+DSE++V V+ ++FH+LNG+ VEVKRAVP+E
Sbjct: 163 ITFDSEDSVQSVMMRSFHDLNGRQVEVKRAVPRE 196
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+FVGG+ TE K++F ++G + + +D T+ PRGFGF+T+ + L
Sbjct: 11 KLFVGGISRETTEDTLKHHFTKYGDVLHSTISFDRTTRIPRGFGFVTFSDISSAHNALQD 70
Query: 130 TFHELNGKMVEVKRAVPK 147
T H + G+ VEV++A+P+
Sbjct: 71 T-HAILGRKVEVRKAIPR 87
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:438661-434987 | 20130731
Length = 383
Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 73/154 (47%), Positives = 104/154 (67%), Gaps = 13/154 (8%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGSVH 60
M+DR TG+ RGFGF+ +ADP+V ++VI D HII+ + VE K+ +PR G+V
Sbjct: 77 MKDRKTGQPRGFGFITYADPSVVDKVIEDSHIINSKQVEIKRTIPR----------GAV- 125
Query: 61 GSPGPGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 120
GS RTKKIFVGG+PS +TE +F+++F ++G + D +M DH+T R RGFGF+T+D+E
Sbjct: 126 GSK-DFRTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFVTFDTE 184
Query: 121 EAVDRVL-FKTFHELNGKMVEVKRAVPKELSPGP 153
EAVD +L E G VE+K+A PK+ + P
Sbjct: 185 EAVDDLLSMGNKIEFAGTQVEIKKAEPKKANAPP 218
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 61/101 (60%), Gaps = 7/101 (6%)
Query: 48 DQNTLNRQSGSVHG-SPGPGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNT 106
+Q N QS + G SPG KIF+GGL T + F +F ++G ITD V+M D T
Sbjct: 28 EQQHHNSQSLTGDGASPG-----KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKT 82
Query: 107 QRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPK 147
+PRGFGFITY VD+V+ + H +N K VE+KR +P+
Sbjct: 83 GQPRGFGFITYADPSVVDKVIEDS-HIINSKQVEIKRTIPR 122
>Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:37290152-37292326 | 20130731
Length = 352
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 96/149 (64%), Gaps = 13/149 (8%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGSVH 60
M+DR TGR RGFGF+ +AD +V ++VI + HII+ + VE K+ +P+ T +
Sbjct: 50 MKDRHTGRPRGFGFITYADASVVDQVIQENHIINDKQVEIKRTIPKGASQTNDF------ 103
Query: 61 GSPGPGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 120
+TKKIFVGG+P+T++E + K +F + G + + ++ DH T+R RGFGF+ +DS+
Sbjct: 104 ------KTKKIFVGGIPATVSEDELKIFFSKHGNVVEHEIIRDHTTKRSRGFGFVVFDSD 157
Query: 121 EAVDRVLFK-TFHELNGKMVEVKRAVPKE 148
+AVD +L +++ VE+K+A PK+
Sbjct: 158 KAVDNLLADGNMIDMDDTQVEIKKAEPKK 186
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 62/97 (63%), Gaps = 6/97 (6%)
Query: 53 NRQSGSVHGSPG--PGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPR 110
+R+S + H G PG KIF+GGL T +F YF+++G ITD V+M D +T RPR
Sbjct: 3 SRKSDNPHSGDGASPG---KIFIGGLAKDTTLEEFVKYFERYGEITDSVIMKDRHTGRPR 59
Query: 111 GFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPK 147
GFGFITY VD+V+ + H +N K VE+KR +PK
Sbjct: 60 GFGFITYADASVVDQVIQEN-HIINDKQVEIKRTIPK 95
>Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 90/148 (60%), Gaps = 13/148 (8%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGSVH 60
M++R+TGR+RGFG+V FA A+ V+ +H++ R +E K A P+++ +
Sbjct: 36 MKERSTGRSRGFGYVTFASVDDAKEVLSGEHVLGDRMLEVKVATPKEEMRAPAK------ 89
Query: 61 GSPGPGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 120
+ +IFV +P ++TE F+++F+++G ITD+ + D ++ RG GFIT+ +
Sbjct: 90 ------KVTRIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNA 143
Query: 121 EAVDRVLFKTFHELNGKMVEVKRAVPKE 148
E+V+ ++ +T HEL G V V RA PKE
Sbjct: 144 ESVENLMSET-HELGGSAVVVDRATPKE 170
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 75/178 (42%), Gaps = 34/178 (19%)
Query: 2 RDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQ------------ 49
+D+ + RG GF+ F + E ++ + H + G V +A P++D
Sbjct: 125 KDQGSKMHRGIGFITFGNAESVENLMSETHELGGSAVVVDRATPKEDDVKPTGRMSQGGG 184
Query: 50 -------------------NTLNRQSGSVHGSPGPGR--TKKIFVGGLPSTITESDFKNY 88
TL G ++G P R +KKIFVG LP D + Y
Sbjct: 185 YGAYNAYISTATRYAALGAPTLYDHPGPIYGRGEPRRRISKKIFVGRLPPEANSEDLRQY 244
Query: 89 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVP 146
F +FG I DV + D RGFGF+T+ E DRV + HE+ G V + A P
Sbjct: 245 FGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSLRP-HEICGHEVAIDSATP 301
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 69 KKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLF 128
+K+ V G+P + K Y ++G + D +VM + +T R RGFG++T+ S + VL
Sbjct: 4 RKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLS 63
Query: 129 KTFHELNGKMVEVKRAVPKELSPGPIRS 156
H L +M+EVK A PKE P +
Sbjct: 64 GE-HVLGDRMLEVKVATPKEEMRAPAKK 90
>Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 90/148 (60%), Gaps = 13/148 (8%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGSVH 60
M++R+TGR+RGFG+V FA A+ V+ +H++ R +E K A P+++ +
Sbjct: 36 MKERSTGRSRGFGYVTFASVDDAKEVLSGEHVLGDRMLEVKVATPKEEMRAPAK------ 89
Query: 61 GSPGPGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 120
+ +IFV +P ++TE F+++F+++G ITD+ + D ++ RG GFIT+ +
Sbjct: 90 ------KVTRIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNA 143
Query: 121 EAVDRVLFKTFHELNGKMVEVKRAVPKE 148
E+V+ ++ +T HEL G V V RA PKE
Sbjct: 144 ESVENLMSET-HELGGSAVVVDRATPKE 170
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 75/178 (42%), Gaps = 34/178 (19%)
Query: 2 RDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQ------------ 49
+D+ + RG GF+ F + E ++ + H + G V +A P++D
Sbjct: 125 KDQGSKMHRGIGFITFGNAESVENLMSETHELGGSAVVVDRATPKEDDVKPTGRMSQGGG 184
Query: 50 -------------------NTLNRQSGSVHGSPGPGR--TKKIFVGGLPSTITESDFKNY 88
TL G ++G P R +KKIFVG LP D + Y
Sbjct: 185 YGAYNAYISTATRYAALGAPTLYDHPGPIYGRGEPRRRISKKIFVGRLPPEANSEDLRQY 244
Query: 89 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVP 146
F +FG I DV + D RGFGF+T+ E DRV + HE+ G V + A P
Sbjct: 245 FGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSLRP-HEICGHEVAIDSATP 301
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 69 KKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLF 128
+K+ V G+P + K Y ++G + D +VM + +T R RGFG++T+ S + VL
Sbjct: 4 RKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLS 63
Query: 129 KTFHELNGKMVEVKRAVPKELSPGPIRS 156
H L +M+EVK A PKE P +
Sbjct: 64 GE-HVLGDRMLEVKVATPKEEMRAPAKK 90
>Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 397
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 90/148 (60%), Gaps = 13/148 (8%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGSVH 60
M++R+TGR+RGFG+V FA A+ V+ +H++ R +E K A P+++ +
Sbjct: 36 MKERSTGRSRGFGYVTFASVDDAKEVLSGEHVLGDRMLEVKVATPKEEMRAPAK------ 89
Query: 61 GSPGPGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 120
+ +IFV +P ++TE F+++F+++G ITD+ + D ++ RG GFIT+ +
Sbjct: 90 ------KVTRIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNA 143
Query: 121 EAVDRVLFKTFHELNGKMVEVKRAVPKE 148
E+V+ ++ +T HEL G V V RA PKE
Sbjct: 144 ESVENLMSET-HELGGSAVVVDRATPKE 170
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 75/178 (42%), Gaps = 34/178 (19%)
Query: 2 RDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQ------------ 49
+D+ + RG GF+ F + E ++ + H + G V +A P++D
Sbjct: 125 KDQGSKMHRGIGFITFGNAESVENLMSETHELGGSAVVVDRATPKEDDVKPTGRMSQGGG 184
Query: 50 -------------------NTLNRQSGSVHGSPGPGR--TKKIFVGGLPSTITESDFKNY 88
TL G ++G P R +KKIFVG LP D + Y
Sbjct: 185 YGAYNAYISTATRYAALGAPTLYDHPGPIYGRGEPRRRISKKIFVGRLPPEANSEDLRQY 244
Query: 89 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVP 146
F +FG I DV + D RGFGF+T+ E DRV + HE+ G V + A P
Sbjct: 245 FGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSLRP-HEICGHEVAIDSATP 301
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 69 KKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLF 128
+K+ V G+P + K Y ++G + D +VM + +T R RGFG++T+ S + VL
Sbjct: 4 RKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLS 63
Query: 129 KTFHELNGKMVEVKRAVPKELSPGPIRS 156
H L +M+EVK A PKE P +
Sbjct: 64 GE-HVLGDRMLEVKVATPKEEMRAPAKK 90
>Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 373
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 90/148 (60%), Gaps = 13/148 (8%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGSVH 60
M++R+TGR+RGFG+V FA A+ V+ +H++ R +E K A P+++ +
Sbjct: 36 MKERSTGRSRGFGYVTFASVDDAKEVLSGEHVLGDRMLEVKVATPKEEMRAPAK------ 89
Query: 61 GSPGPGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 120
+ +IFV +P ++TE F+++F+++G ITD+ + D ++ RG GFIT+ +
Sbjct: 90 ------KVTRIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNA 143
Query: 121 EAVDRVLFKTFHELNGKMVEVKRAVPKE 148
E+V+ ++ +T HEL G V V RA PKE
Sbjct: 144 ESVENLMSET-HELGGSAVVVDRATPKE 170
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 75/178 (42%), Gaps = 34/178 (19%)
Query: 2 RDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQ------------ 49
+D+ + RG GF+ F + E ++ + H + G V +A P++D
Sbjct: 125 KDQGSKMHRGIGFITFGNAESVENLMSETHELGGSAVVVDRATPKEDDVKPTGRMSQGGG 184
Query: 50 -------------------NTLNRQSGSVHGSPGPGR--TKKIFVGGLPSTITESDFKNY 88
TL G ++G P R +KKIFVG LP D + Y
Sbjct: 185 YGAYNAYISTATRYAALGAPTLYDHPGPIYGRGEPRRRISKKIFVGRLPPEANSEDLRQY 244
Query: 89 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVP 146
F +FG I DV + D RGFGF+T+ E DRV + HE+ G V + A P
Sbjct: 245 FGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSLRP-HEICGHEVAIDSATP 301
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 69 KKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLF 128
+K+ V G+P + K Y ++G + D +VM + +T R RGFG++T+ S + VL
Sbjct: 4 RKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLS 63
Query: 129 KTFHELNGKMVEVKRAVPKELSPGPIRS 156
H L +M+EVK A PKE P +
Sbjct: 64 GE-HVLGDRMLEVKVATPKEEMRAPAKK 90
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 65 PGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 124
P KIFVG LP + F+Q GT+ V+Y+ +T R RGFGF+T + E V+
Sbjct: 118 PSEDLKIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVE 177
Query: 125 RVLFK-TFHELNGKMVEVKRAVPK 147
R + K + EL+G+++ V +A P+
Sbjct: 178 RAVNKFSGFELDGRLLTVNKAAPR 201
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 66/151 (43%), Gaps = 23/151 (15%)
Query: 3 DRATGRARGFGFVVFADPAVAERVI--VDKHIIDGRTVEAKKAVPRDDQNTLNRQSGSVH 60
+R T R+RGFGFV + ER + +DGR + KA PR
Sbjct: 156 NRDTDRSRGFGFVTMSTSEEVERAVNKFSGFELDGRLLTVNKAAPR-------------- 201
Query: 61 GSPGPGRTK------KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGF 114
G+P + + + +VG LP + S + F + G + V+YD T R RGFGF
Sbjct: 202 GTPRLRQPRTFNSGLRAYVGNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETGRSRGFGF 261
Query: 115 ITYDSE-EAVDRVLFKTFHELNGKMVEVKRA 144
+T +E E D + NG+ + V A
Sbjct: 262 VTMSNEAEMNDAIAALDGQSFNGRAIRVNVA 292
>Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr4:34502474-34498575 | 20130731
Length = 356
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 3 DRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGSVHGS 62
D+ATGR++G+GFVV+ +H+ DG + K+ + D Q + +
Sbjct: 110 DKATGRSKGYGFVVY------------RHV-DGAVLALKEPSKKIDGRMTVTQLAAAGST 156
Query: 63 PGPGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEA 122
G ++K+FVG +P ++ + F ++G I + + +D + + RGF F Y +EE
Sbjct: 157 GGDVSSRKVFVGNVPFEVSAESLLSEFSKYGEIEEGPLGFDKASGKTRGFAFFVYKTEEG 216
Query: 123 VDRVLFKTFHELNGKMVEVKRAV 145
+ ++ ++G V K AV
Sbjct: 217 AKNSVAESMKTVDGHQVICKFAV 239
>Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein,
putative | HC | chr1:41816599-41813158 | 20130731
Length = 284
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 9/133 (6%)
Query: 12 FGFVVFADPAVAERV-----IVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGSVHGSPGPG 66
FGF D A + ++ D E K R+ +N+LN + S
Sbjct: 130 FGFCCELDEDCAHELSGVPGVLSVQPDDNFESENKDYEGRNLENSLNMPNSSEASQEASV 189
Query: 67 RTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRV 126
+TKK+FV GL +E + F+ FG + +V V+ D ++R +G+ FI Y +EEA
Sbjct: 190 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYTTEEAASAA 249
Query: 127 LFKTFHELNGKMV 139
L E+NGK++
Sbjct: 250 L----KEMNGKII 258
>Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54300708-54296502 | 20130731
Length = 372
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 61/133 (45%), Gaps = 18/133 (13%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+FVGGL + YF+QFG I + VV+ D NT R +G+GF+T+ EA R
Sbjct: 30 KVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 89
Query: 130 TFHELNGKMVEVKRAV---PK--ELSPGPIR--SPLIGSYN---------YGLNRASSYL 173
++G+ A P+ +S G +R SP +GS YG + SY
Sbjct: 90 PSPVIDGRRANCNLASHGRPRGPPISYGRVRPASPYVGSLQPARGAYVGGYGYQQPLSY- 148
Query: 174 NSYAQGFNMNPVG 186
Y QG P G
Sbjct: 149 -GYQQGMVYPPYG 160
>Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:41240036-41242642 | 20130731
Length = 89
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 9/84 (10%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+FV L T+ ++ F FG +T+ ++ D NTQRP+GFGF++Y SE + K
Sbjct: 8 KLFVSRLSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAE----K 63
Query: 130 TFHELNGKMVE-----VKRAVPKE 148
LNG++V+ V+ A PK+
Sbjct: 64 ARKALNGRIVDGRLIFVEHAKPKD 87
>Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54301450-54296178 | 20130731
Length = 281
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 61/133 (45%), Gaps = 18/133 (13%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+FVGGL + YF+QFG I + VV+ D NT R +G+GF+T+ EA R
Sbjct: 30 KVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 89
Query: 130 TFHELNGKMVEVKRAV---PK--ELSPGPIR--SPLIGSYN---------YGLNRASSYL 173
++G+ A P+ +S G +R SP +GS YG + SY
Sbjct: 90 PSPVIDGRRANCNLASHGRPRGPPISYGRVRPASPYVGSLQPARGAYVGGYGYQQPLSY- 148
Query: 174 NSYAQGFNMNPVG 186
Y QG P G
Sbjct: 149 -GYQQGMVYPPYG 160
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 68 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDRV 126
T K+F+GG+ + E+ + F ++G + D ++ D T R RGFGFIT++S EEA +
Sbjct: 41 TTKLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAI 100
Query: 127 LFKTFHELNGKMVEVKRA 144
+L+G+ V V A
Sbjct: 101 QALDGQDLHGRRVRVNYA 118
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 20/150 (13%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVI--VDKHIIDGRTVE---AKKAVPRDDQNTLNRQ 55
+ DR TG++RGF FV + VI +D GRT+ + K P++
Sbjct: 145 LYDRDTGKSRGFAFVTMSCVEDCNAVIQNLDGKEFMGRTLRVNFSDKPKPKEPLY----- 199
Query: 56 SGSVHGSPGPGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFI 115
P K+FVG L T+T F + GT+ V++D T + RG+GF+
Sbjct: 200 ---------PETEYKLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFV 250
Query: 116 TYDSEEAVDRVL-FKTFHELNGKMVEVKRA 144
+Y ++ +D L EL G+ + V A
Sbjct: 251 SYATKSEMDTALAIMDNVELEGRTLRVSLA 280
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 68 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSEEAVDRV 126
+ K+F+GG+ + E+ + F ++G + D ++ D +T R RGFGFIT+ SEEA +
Sbjct: 39 SAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSAL 98
Query: 127 LFKTFHELNGKMVEVKRAVPK 147
EL+G+ V V A +
Sbjct: 99 QAMDNKELDGRTVRVNYATER 119
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 68 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSEEAVDRV 126
+ K+F+GG+ + E+ + F ++G + D ++ D +T R RGFGFIT+ SEEA +
Sbjct: 39 SAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSAL 98
Query: 127 LFKTFHELNGKMVEVKRAVPK 147
EL+G+ V V A +
Sbjct: 99 QAMDNKELDGRTVRVNYATER 119
>Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:12141158-12149871 | 20130731
Length = 272
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+FVGGL + K YF+QFG I + VV+ D T R +G+GF+T+ +A R
Sbjct: 17 KVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACVD 76
Query: 130 TFHELNGKMVEVKRA 144
++G+ A
Sbjct: 77 AAPIIDGRRANCNLA 91
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 17/157 (10%)
Query: 3 DRATGRARGFGFVVFADPAVAERVI--VDKHIIDGRTVEAKK---AVPRDDQNTL----- 52
D++TGR+RGFGFV + A E ++ +++DGR + PR + +
Sbjct: 118 DKSTGRSRGFGFVTMSSAAEVEAAAQQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPR 177
Query: 53 ---NRQSGSVHGSPGPGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRP 109
+R G G G ++ VG L + ++ F + G + + V+YD + R
Sbjct: 178 FGGDRPRGPPRGGSSDG-DNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRS 236
Query: 110 RGFGFITYDSEEAVDRVLFKTFH--ELNGKMVEVKRA 144
RGFGF+T+ S + VD + +T +LNG+ + V A
Sbjct: 237 RGFGFVTFSSADEVDSAI-RTLDGADLNGRAIRVSPA 272
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 17/157 (10%)
Query: 3 DRATGRARGFGFVVFADPAVAERVI--VDKHIIDGRTVEAKK---AVPRDDQNTL----- 52
D++TGR+RGFGFV + A E ++ +++DGR + PR + +
Sbjct: 118 DKSTGRSRGFGFVTMSSAAEVEAAAQQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPR 177
Query: 53 ---NRQSGSVHGSPGPGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRP 109
+R G G G ++ VG L + ++ F + G + + V+YD + R
Sbjct: 178 FGGDRPRGPPRGGSSDG-DNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRS 236
Query: 110 RGFGFITYDSEEAVDRVLFKTFH--ELNGKMVEVKRA 144
RGFGF+T+ S + VD + +T +LNG+ + V A
Sbjct: 237 RGFGFVTFSSADEVDSAI-RTLDGADLNGRAIRVSPA 272
>Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:12141158-12149871 | 20130731
Length = 267
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+FVGGL + K YF+QFG I + VV+ D T R +G+GF+T+ +A R
Sbjct: 17 KVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACVD 76
Query: 130 TFHELNGKMVEVKRA 144
++G+ A
Sbjct: 77 AAPIIDGRRANCNLA 91
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 37/53 (69%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEA 122
K+FVGGL ++ E K+ F FG +T+V ++YD ++ R RGFGF+ + +E+A
Sbjct: 37 KLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDA 89
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 68 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 127
+ K+F+GGL + + ++ F +G + + V+ D T R RGFGF+ + SEE+ L
Sbjct: 35 SSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL 94
Query: 128 FKTFHELNGKMVEVKRAVPKE 148
+LNG+ + V A ++
Sbjct: 95 SMDGQDLNGRNIRVSYANDRQ 115
>Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC |
chr4:33938062-33942519 | 20130731
Length = 454
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 26/161 (16%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQN-TLNRQSGSV 59
+R++ TG++ G+GFV F A+AE+V+ + +G +P DQ LN + S
Sbjct: 148 IRNKQTGQSEGYGFVEFYTRAMAEKVLQN---FNG------TMMPNTDQAFRLNWATFSA 198
Query: 60 HGSPGPGRTKK------IFVGGLPSTITESDFKNYF-DQFGTITDVVVMYDHNTQRPRGF 112
G G R+ + +FVG L +T++ + F +F +I V+ D NT R +G+
Sbjct: 199 AGGGGERRSSEATSDLSVFVGDLAIDVTDAMLQETFASKFSSIKGAKVVIDSNTGRSKGY 258
Query: 113 GFITYDSEEAVDRVLFKTFHELNG-----KMVEVKRAVPKE 148
GF+ + E R + E+NG + + V A PK+
Sbjct: 259 GFVRFGDESERTRAM----TEMNGVYCSSRPMRVGVATPKK 295
>Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:26612934-26618708 | 20130731
Length = 283
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 127
K+FVGGL + + YF+QFG I + V++ D NT + +G+GF+T+ E+ R
Sbjct: 17 KVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRAC 74
>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176327 | 20130731
Length = 425
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 14/141 (9%)
Query: 3 DRATGRARGFGFVVFADPAVAERVIVDKH--IIDGRTVEAKKAVPRDD--QNTLNRQSGS 58
D TGR++G+GFV F D + + + + R + A PR + +G+
Sbjct: 225 DANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQPGGQSNGT 284
Query: 59 VHGSPGPGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYD 118
S IFVGGL S +T+ D K F Q+G I V + +G GF+ +
Sbjct: 285 SSQSEADSTNTTIFVGGLDSNVTDEDLKQTFSQYGEIASVKIPVG------KGCGFVQFA 338
Query: 119 SEEAVDRVLFKTFHELNGKMV 139
+ + L K LNG M+
Sbjct: 339 NRNNAEEALQK----LNGTMI 355
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDRVLF 128
K+FVGG+ E + F ++G + D ++ D + R +GFGF+TY++ EEA +
Sbjct: 45 KLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQA 104
Query: 129 KTFHELNGKMVEVKRA 144
+L G+ V V A
Sbjct: 105 LDGQDLYGRRVGVNFA 120
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDRVLF 128
K+FVGG+ E + F ++G + D ++ D + R +GFGF+TY++ EEA +
Sbjct: 45 KLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQA 104
Query: 129 KTFHELNGKMVEVKRA 144
+L G+ V V A
Sbjct: 105 LDGQDLYGRRVGVNFA 120
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 18/129 (13%)
Query: 2 RDRATGRARGFGFVVFADPAVAERVIVDKHIID--GRTVEAKKAVPRDDQNTLNRQSGSV 59
+DR T + +G+GFV F A+ I ++I G+ + KA D+ +L+ +
Sbjct: 58 KDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA--SQDKKSLDVGA--- 112
Query: 60 HGSPGPGRTKKIFVGGLPSTITESDFKNYFDQFGTI-TDVVVMYDHNTQRPRGFGFITYD 118
+F+G L + E + F FG I T+ +M D +T RGFGFI+YD
Sbjct: 113 ----------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYD 162
Query: 119 SEEAVDRVL 127
S EA D +
Sbjct: 163 SFEASDSAI 171
>Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9035953-9039164 | 20130731
Length = 282
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 127
K+FVGGL + YF+QFG I + VV+ D T R +G+GF+T+ EA R
Sbjct: 26 KLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRAC 83
>Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9035953-9039164 | 20130731
Length = 280
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 127
K+FVGGL + YF+QFG I + VV+ D T R +G+GF+T+ EA R
Sbjct: 26 KLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRAC 83
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 68/147 (46%), Gaps = 17/147 (11%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQS---G 57
MRD A GR++ FGFV F + A + + ++G+ V+ K+ Q R+ G
Sbjct: 243 MRD-ADGRSKCFGFVNFENAEDAAKAV---EALNGKKVDDKEWYVGKAQKKSEREQELKG 298
Query: 58 SVHGSPGPGRTKK-----IFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGF 112
+ K +++ L +IT+ K F +FGTIT +M D N RG
Sbjct: 299 RFEQTVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKIMRDPNGVS-RGS 357
Query: 113 GFITYDSEEAVDRVLFKTFHELNGKMV 139
GF+ + + E R L E+NGKM+
Sbjct: 358 GFVAFSTPEEASRAL----GEMNGKMI 380
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 17/140 (12%)
Query: 6 TGRARGFGFVVFADPAVAERVI--VDKHIIDGRTVEAKKAVPRDDQNTLNRQSGSVHGSP 63
+G+++G+GFV F A+ I ++ +I+ + V + + D++ + ++
Sbjct: 156 SGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQDRDNVLSKT------- 208
Query: 64 GPGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV 123
+ ++V L + TE D KN F +GTIT V+M D + R + FGF+ +++ E
Sbjct: 209 ---KFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADG-RSKCFGFVNFENAEDA 264
Query: 124 DRVLFKTFHELNGKMVEVKR 143
K LNGK V+ K
Sbjct: 265 A----KAVEALNGKKVDDKE 280
>Medtr3g462330.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:24877263-24880115 | 20130731
Length = 340
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 71 IFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDR-VLFK 129
++V GL IT+ + + +F G + DV ++ D T+ RGFGF+T D+ E DR V +
Sbjct: 47 LYVTGLSPRITKRELEKHFSAKGKVVDVHLVVDPWTRESRGFGFVTMDTLEEADRCVKYL 106
Query: 130 TFHELNGKMVEVKRA 144
L G+++ V++A
Sbjct: 107 NRSVLEGRVITVEKA 121
>Medtr3g095230.2 | CC1-like splicing factor | LC |
chr3:43513031-43520987 | 20130731
Length = 576
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 9/141 (6%)
Query: 1 MRDRATGRARGFGFVVFADP-AVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGSV 59
+ DR + R++G G++ F D +V + + ++ G+ V K + + N +G+
Sbjct: 247 IMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAA 306
Query: 60 HGSPGP--GRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITY 117
G GP +K++VG L +TES + F+ FGT+ V + D T +GFGFI +
Sbjct: 307 -GVVGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQF 365
Query: 118 DSEEAVDRVLFKTFHELNGKM 138
E K LNGK+
Sbjct: 366 AHIEHA-----KAAQSLNGKL 381
>Medtr3g095230.3 | CC1-like splicing factor | LC |
chr3:43513031-43520279 | 20130731
Length = 576
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 9/141 (6%)
Query: 1 MRDRATGRARGFGFVVFADP-AVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGSV 59
+ DR + R++G G++ F D +V + + ++ G+ V K + + N +G+
Sbjct: 247 IMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAA 306
Query: 60 HGSPGP--GRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITY 117
G GP +K++VG L +TES + F+ FGT+ V + D T +GFGFI +
Sbjct: 307 -GVVGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQF 365
Query: 118 DSEEAVDRVLFKTFHELNGKM 138
E K LNGK+
Sbjct: 366 AHIEHA-----KAAQSLNGKL 381
>Medtr3g095230.1 | CC1-like splicing factor | LC |
chr3:43513030-43521003 | 20130731
Length = 587
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 9/141 (6%)
Query: 1 MRDRATGRARGFGFVVFADP-AVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGSV 59
+ DR + R++G G++ F D +V + + ++ G+ V K + + N +G+
Sbjct: 247 IMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAA 306
Query: 60 HGSPGP--GRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITY 117
G GP +K++VG L +TES + F+ FGT+ V + D T +GFGFI +
Sbjct: 307 -GVVGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQF 365
Query: 118 DSEEAVDRVLFKTFHELNGKM 138
E K LNGK+
Sbjct: 366 AHIEHA-----KAAQSLNGKL 381
>Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 60/144 (41%), Gaps = 6/144 (4%)
Query: 3 DRATGRARGFGFVVFADPAVAERVIVD-KHIIDGRTVEAKKAVPRDDQNTLNRQSGSVHG 61
D+A+G+++G+ F++F R + + +I RT + A
Sbjct: 199 DKASGKSKGYAFILFKHRTGCRRALKQPQKVIGNRTTSCQLASAGPVPAPPPNAPPVSEY 258
Query: 62 SPGPGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE 121
+ +KIFV + S I +F QFG + D + D T +P+GF Y + E
Sbjct: 259 T-----QRKIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVE 313
Query: 122 AVDRVLFKTFHELNGKMVEVKRAV 145
+ + L + G + ++AV
Sbjct: 314 SAKKALEEPNKVFEGHTLYCQKAV 337
>Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 60/144 (41%), Gaps = 6/144 (4%)
Query: 3 DRATGRARGFGFVVFADPAVAERVIVD-KHIIDGRTVEAKKAVPRDDQNTLNRQSGSVHG 61
D+A+G+++G+ F++F R + + +I RT + A
Sbjct: 199 DKASGKSKGYAFILFKHRTGCRRALKQPQKVIGNRTTSCQLASAGPVPAPPPNAPPVSEY 258
Query: 62 SPGPGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE 121
+ +KIFV + S I +F QFG + D + D T +P+GF Y + E
Sbjct: 259 T-----QRKIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVE 313
Query: 122 AVDRVLFKTFHELNGKMVEVKRAV 145
+ + L + G + ++AV
Sbjct: 314 SAKKALEEPNKVFEGHTLYCQKAV 337
>Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 60/144 (41%), Gaps = 6/144 (4%)
Query: 3 DRATGRARGFGFVVFADPAVAERVIVD-KHIIDGRTVEAKKAVPRDDQNTLNRQSGSVHG 61
D+A+G+++G+ F++F R + + +I RT + A
Sbjct: 199 DKASGKSKGYAFILFKHRTGCRRALKQPQKVIGNRTTSCQLASAGPVPAPPPNAPPVSEY 258
Query: 62 SPGPGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE 121
+ +KIFV + S I +F QFG + D + D T +P+GF Y + E
Sbjct: 259 T-----QRKIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVE 313
Query: 122 AVDRVLFKTFHELNGKMVEVKRAV 145
+ + L + G + ++AV
Sbjct: 314 SAKKALEEPNKVFEGHTLYCQKAV 337
>Medtr4g122650.1 | flowering time control FCA-like protein | HC |
chr4:50587410-50576809 | 20130731
Length = 737
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 66 GRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDR 125
G K+FVG +P T TE D + F++ G + +V ++ D T + +G FI Y + E D+
Sbjct: 85 GNFAKLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQ 144
Query: 126 VL--FKTFHELNGKM--VEVKRA 144
+ H L G + ++V+ A
Sbjct: 145 AIRALHNRHTLPGGVGPIQVRYA 167
>Medtr5g023060.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:9164769-9167836 | 20130731
Length = 303
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 71 IFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFKT 130
++V GL S +TE D + +F + G + ++ + T+ RGF F+T D+ E +R + K
Sbjct: 133 LYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDTAEDANRCI-KY 191
Query: 131 FHE--LNGKMVEV---KRAVPKELSPG 152
++ L G+ + V KR P+ +PG
Sbjct: 192 LNQSILEGRYITVERSKRKRPRTPTPG 218
>Medtr8g074790.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr8:31620260-31623626 | 20130731
Length = 270
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 11/110 (10%)
Query: 65 PGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 124
PG T ++V GL S +T+ D +++F + G + ++ + T+ RGF F+T DS E +
Sbjct: 60 PGNT--LYVTGLSSRVTDRDLEDHFSKEGKVASCFLVVEPRTRISRGFAFVTMDSHEDAE 117
Query: 125 RVLFKTFHE--LNGKMVEVKRAVPKELSPGPIRSPLIGSYNYGLNRASSY 172
R + K ++ L G+ + V+R+ K R+P G Y GL Y
Sbjct: 118 RCI-KHLNQSVLEGRYITVERSRRKR-----ARTPTPGHY-LGLKNTRDY 160
>Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr6:28646362-28643393 | 20130731
Length = 183
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
+++V GL TE +N F FG + DV ++ D RPRGF F+ Y +EE + + +
Sbjct: 96 RLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAI-E 154
Query: 130 TFH--ELNGKMVEVKRAVPK-ELSPG 152
H L+G+++ V+ A P+ EL G
Sbjct: 155 GMHGKFLDGRVIFVEVAKPRSELRQG 180
>Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 35/69 (50%)
Query: 49 QNTLNRQSGSVHGSPGPGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQR 108
QN + V G KIFVGGL K YFDQFG I + VV+ D T +
Sbjct: 6 QNKITMSLNVVPKHVGDTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGK 65
Query: 109 PRGFGFITY 117
+G+GF+T+
Sbjct: 66 SKGYGFVTF 74
>Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 35/69 (50%)
Query: 49 QNTLNRQSGSVHGSPGPGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQR 108
QN + V G KIFVGGL K YFDQFG I + VV+ D T +
Sbjct: 6 QNKITMSLNVVPKHVGDTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGK 65
Query: 109 PRGFGFITY 117
+G+GF+T+
Sbjct: 66 SKGYGFVTF 74
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 19/157 (12%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGSV- 59
+R++ TG+ G+GF+ F + AERV+ +G + + R LN S +
Sbjct: 47 IRNKITGQPEGYGFIEFVSHSAAERVL---QTYNGTQMPGTEQTFR-----LNWASFGIG 98
Query: 60 HGSPGPGRTKKIFVGGLPSTITESDFKNYF-DQFGTITDVVVMYDHNTQRPRGFGFITYD 118
P G IFVG L +T+ + F +G++ V+ D NT R +G+GF+ +
Sbjct: 99 ERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFS 158
Query: 119 SEEAVDRVLFKTFHELNG-----KMVEVKRAVPKELS 150
E +R + E+NG + + + A PK+ +
Sbjct: 159 DESERNRAM----SEMNGVYCSTRPMRISAATPKKTT 191
>Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC |
chr4:55111286-55115662 | 20130731
Length = 411
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 81/190 (42%), Gaps = 30/190 (15%)
Query: 3 DRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGSVHGS 62
DR TGR +G+GFV FAD + R + + + T + P ++N + S + + +
Sbjct: 202 DRTTGRTKGYGFVRFADESEQMRAMTEMQGVLCST-RPMRIGPASNKNLGTQTSKASYQN 260
Query: 63 PGPGRTKK-------IFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRG--FG 113
P G + IFVG L +T+ K F Q+G + V + P G G
Sbjct: 261 PQGGAQNENDPNNTTIFVGNLDPNVTDEHLKQVFTQYGELVHVKI--------PSGKRCG 312
Query: 114 FITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPLIGSYNYGLNR---AS 170
F+ + + + L LNG ++ + LS G RSP N+ +S
Sbjct: 313 FVQFADRSSAEEAL----RVLNGTLLGGQNV---RLSWG--RSPANKQTQQDPNQWNGSS 363
Query: 171 SYLNSYAQGF 180
SY YAQG+
Sbjct: 364 SYFGGYAQGY 373
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 88/183 (48%), Gaps = 21/183 (11%)
Query: 7 GRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGSVHGSPGPG 66
G++ G+GFV + D + + ++K +DG ++ KKA + RQ S +GSP
Sbjct: 52 GKSLGYGFVQY-DNHESAKCAIEK--LDGMLIKDKKAFV---GYFIRRQERSENGSP--- 102
Query: 67 RTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE----A 122
+ ++V L T T+ D K F +G IT V+M D N + FGF+ + S + A
Sbjct: 103 KFTNVYVKNLLETDTDEDLKKLFSTYGVITSAVIMKDENGN-SKCFGFVNFQSPDSAAAA 161
Query: 123 VDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPL----IGSYNYGLNRASSYLNSYAQ 178
V+++ T + +GK++ V RA K +R+ I Y L A+ YL + +
Sbjct: 162 VEKLNGTTTN--DGKVLYVGRAQRKCEREAELRAKFEQEKIKRYE-KLQGANLYLKNLDE 218
Query: 179 GFN 181
N
Sbjct: 219 SIN 221
>Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:22547309-22542060 | 20130731
Length = 445
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 12/145 (8%)
Query: 3 DRATGRARGFGFVVF--ADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGSVH 60
D+ATG+++G+GFV F D A+ K IDGR + A + + N +
Sbjct: 107 DKATGKSKGYGFVTFLHVDGALLALREPSKR-IDGRVTVTQLAAAGNSGSNTNAADVA-- 163
Query: 61 GSPGPGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 120
+KI+V +P + +F +G I + + +D T R +GF Y +
Sbjct: 164 -------QRKIYVSNVPPDLPGDKLLAHFSIYGEIEEGPLGFDKQTGRSKGFALFVYKTP 216
Query: 121 EAVDRVLFKTFHELNGKMVEVKRAV 145
E + + + + G+ + K A+
Sbjct: 217 EGANAAVSEPVKNVEGRQLNCKLAI 241
>Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26401562-26402849 | 20130731
Length = 190
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
+ FVGGL + F +FG ITD V+ D T R RGFGF+T+ A ++ +
Sbjct: 9 RCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTF----AEEKSMRD 64
Query: 130 TFHELNGKMVE 140
E+NG+ ++
Sbjct: 65 AIEEMNGQDID 75
>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:37745112-37734961 | 20130731
Length = 865
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
++FV LP + TE + + +F QFG+++ ++ D +T+R +G +I + + E R L +
Sbjct: 330 RLFVRNLPYSTTEEELEEHFSQFGSVSQAHLVVDKDTKRSKGIAYIHFSAPEFAARALEE 389
Query: 130 TFHEL-NGKMVEVKRAVPK 147
+ + + G+++ V A+P+
Sbjct: 390 SDNSIFQGRLLHVMPAIPR 408
>Medtr8g092550.1 | CC1-like splicing factor | HC |
chr8:38688579-38694751 | 20130731
Length = 567
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 3 DRATGRARGFGFVVFADP-AVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGSVHG 61
DR + R++G G++ F D +V + + ++ G+ V K + + N SG+
Sbjct: 236 DRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASSGAAVV 295
Query: 62 SPGPGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE 121
P +K++VG L +TE++ + F+ FG I V + D T +GFGF+ + E
Sbjct: 296 GPYGAVDRKLYVGNLHFNMTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLE 355
Query: 122 AVDRVLFKTFHELNGKM 138
K LNGK+
Sbjct: 356 HA-----KAAQSLNGKL 367
>Medtr7g094670.1 | mRNA capping enzyme, putative | LC |
chr7:37775862-37750453 | 20130731
Length = 1678
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
++FV LP + TE + + +F QFG+++ V ++ D +T+R +G FI + E R L +
Sbjct: 900 RLFVRNLPYSTTEEELEEHFSQFGSVSQVHLVVDKDTKRSKGRAFIHFSVPEFAARALEE 959
Query: 130 TFHEL-NGKMVEVKRAVP 146
+ + + G+++ V A+P
Sbjct: 960 SDNSIFQGRLLHVIAAIP 977
>Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253164 | 20130731
Length = 250
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 35/69 (50%)
Query: 49 QNTLNRQSGSVHGSPGPGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQR 108
QN + V G KIFVGGL K YFDQFG I + VV+ D T +
Sbjct: 6 QNKITMSLNVVPKHVGDTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGK 65
Query: 109 PRGFGFITY 117
+G+GF+T+
Sbjct: 66 SKGYGFVTF 74
>Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251226-42253109 | 20130731
Length = 251
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 35/69 (50%)
Query: 49 QNTLNRQSGSVHGSPGPGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQR 108
QN + V G KIFVGGL K YFDQFG I + VV+ D T +
Sbjct: 6 QNKITMSLNVVPKHVGDTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGK 65
Query: 109 PRGFGFITY 117
+G+GF+T+
Sbjct: 66 SKGYGFVTF 74
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 8/145 (5%)
Query: 3 DRATGRARGFGFVVFADPAVAERVI--VDKHIIDGRTVEAKKAVPRDDQNTLNRQSGSVH 60
+R T +RGFGFV + AE + + + +GR++ KA P+ + ++
Sbjct: 143 NRQTDLSRGFGFVTMSTVEEAESAVEKFNGYDYNGRSLVVNKASPKGSRPERTERAPRTF 202
Query: 61 GSPGPGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DS 119
+I+V L + S + F + G I V+YD T R RGFGF+T D
Sbjct: 203 EP-----VLRIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDE 257
Query: 120 EEAVDRVLFKTFHELNGKMVEVKRA 144
E D + L G+ + V A
Sbjct: 258 TEMNDAIAALDGQSLEGRTIRVSVA 282
>Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
++FVGGL TE D + F + G +T+V +M + T++ +GF F+ +++ E R + +
Sbjct: 216 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 275
Query: 130 TFHE-LNGKMVEV 141
+ +NGK V
Sbjct: 276 LKNPVINGKQCGV 288
>Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
++FVGGL TE D + F + G +T+V +M + T++ +GF F+ +++ E R + +
Sbjct: 216 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 275
Query: 130 TFHE-LNGKMVEV 141
+ +NGK V
Sbjct: 276 LKNPVINGKQCGV 288
>Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
++FVGGL TE D + F + G +T+V +M + T++ +GF F+ +++ E R + +
Sbjct: 215 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 274
Query: 130 TFHE-LNGKMVEV 141
+ +NGK V
Sbjct: 275 LKNPVINGKQCGV 287
>Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
++FVGGL TE D + F + G +T+V +M + T++ +GF F+ +++ E R + +
Sbjct: 215 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 274
Query: 130 TFHE-LNGKMVEV 141
+ +NGK V
Sbjct: 275 LKNPVINGKQCGV 287
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 67 RTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITY----DSEEA 122
+++++FVG LP +++ S F + G + V ++YD T R RGF F+T D+EEA
Sbjct: 106 QSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEA 165
Query: 123 V 123
+
Sbjct: 166 I 166
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 67 RTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITY----DSEEA 122
+++++FVG LP +++ S F + G + V ++YD T R RGF F+T D+EEA
Sbjct: 106 QSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEA 165
Query: 123 V 123
+
Sbjct: 166 I 166
>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 420
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 18/134 (13%)
Query: 3 DRATGRARGFGFVVFADPAVAERVIVDKH--IIDGRTVEAKKAVPRDDQNTLNRQSGSVH 60
D TGR++G+GFV F D + + + + R + A PR +++ +Q G +
Sbjct: 222 DANTGRSKGYGFVRFGDDGERSKALNEMNGVFCSSRAMRIGAATPR--KSSGYQQGGQSN 279
Query: 61 GSPGPGRTKK----IFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFIT 116
G+P T IFVGGL + T D + F Q+G I V + +G GF+
Sbjct: 280 GTPSQSDTDSTNTTIFVGGLDPSATAEDLRQPFSQYGEIVSVKIPVG------KGCGFVQ 333
Query: 117 Y----DSEEAVDRV 126
+ ++EEA+ ++
Sbjct: 334 FANRNNAEEALQKL 347
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Query: 68 TKKIFVGGLPS--------TITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 119
T K+F+GG+ + E+ + F ++G + D ++ D T R RGFGFIT++S
Sbjct: 41 TTKLFIGGILHLSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNS 100
Query: 120 -EEAVDRVLFKTFHELNGKMVEVKRA 144
EEA + +L+G+ V V A
Sbjct: 101 VEEASSAIQALDGQDLHGRRVRVNYA 126
>Medtr6g477870.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr6:28646362-28643393 | 20130731
Length = 169
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE 121
+++V GL TE +N F FG + DV ++ D RPRGF F+ Y +EE
Sbjct: 96 RLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEE 147
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 127
+++VG LP ++T S + F + GT+ V ++YD T R RGF F+T S E +
Sbjct: 110 RLYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEAI 167
>Medtr3g109090.1 | nucleolysin TIAR-like protein | HC |
chr3:50427006-50436985 | 20130731
Length = 440
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 98/239 (41%), Gaps = 44/239 (18%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDK--HIIDGRTVEAKKAVP-----------RD 47
M D TGR++G+GFV F D A+ I D + R + A D
Sbjct: 177 MWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKIND 236
Query: 48 DQNTLNRQSGSVHG--------SP--GPGRTKKIFVGGLPSTITESDFKNYFDQFGTITD 97
QN + +GS G +P P T ++VG LP +T+++ F G
Sbjct: 237 SQNAVVLTNGSSDGGQDNSNEDAPENNPSYT-TVYVGNLPHDVTQAELHCQFHALG---- 291
Query: 98 VVVMYDHNTQRPRGFGFITYDS-EEAVDRVLFKTFHELNGKMVEV---KRAVPKELSPGP 153
V+ + Q +GFGF+ Y++ EEA + + GK ++ + P + P
Sbjct: 292 AGVLEEVRVQSGKGFGFVRYNTHEEAAMAIQMANGRPVRGKTMKCSWGSKPTPPGTASNP 351
Query: 154 IRSPLIGSYNY----GLNR--ASSYLNSYAQGFNMN--PVGGLG----VRMDGRFSLNP 200
+ P Y G+N+ ++ L +Y + ++ V GL ++M G+ L P
Sbjct: 352 LPPPAAQPYQILPTAGMNQGYTAAELLAYQRQLALSQAAVSGLSGQALLQMSGQHGLAP 410
>Medtr3g109090.2 | nucleolysin TIAR-like protein | HC |
chr3:50426599-50437301 | 20130731
Length = 440
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 98/239 (41%), Gaps = 44/239 (18%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDK--HIIDGRTVEAKKAVP-----------RD 47
M D TGR++G+GFV F D A+ I D + R + A D
Sbjct: 177 MWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKIND 236
Query: 48 DQNTLNRQSGSVHG--------SP--GPGRTKKIFVGGLPSTITESDFKNYFDQFGTITD 97
QN + +GS G +P P T ++VG LP +T+++ F G
Sbjct: 237 SQNAVVLTNGSSDGGQDNSNEDAPENNPSYT-TVYVGNLPHDVTQAELHCQFHALG---- 291
Query: 98 VVVMYDHNTQRPRGFGFITYDS-EEAVDRVLFKTFHELNGKMVEV---KRAVPKELSPGP 153
V+ + Q +GFGF+ Y++ EEA + + GK ++ + P + P
Sbjct: 292 AGVLEEVRVQSGKGFGFVRYNTHEEAAMAIQMANGRPVRGKTMKCSWGSKPTPPGTASNP 351
Query: 154 IRSPLIGSYNY----GLNR--ASSYLNSYAQGFNMN--PVGGLG----VRMDGRFSLNP 200
+ P Y G+N+ ++ L +Y + ++ V GL ++M G+ L P
Sbjct: 352 LPPPAAQPYQILPTAGMNQGYTAAELLAYQRQLALSQAAVSGLSGQALLQMSGQHGLAP 410
>Medtr3g109090.3 | nucleolysin TIAR-like protein | HC |
chr3:50426665-50437301 | 20130731
Length = 424
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 98/239 (41%), Gaps = 44/239 (18%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDK--HIIDGRTVEAKKAVP-----------RD 47
M D TGR++G+GFV F D A+ I D + R + A D
Sbjct: 161 MWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKIND 220
Query: 48 DQNTLNRQSGSVHG--------SP--GPGRTKKIFVGGLPSTITESDFKNYFDQFGTITD 97
QN + +GS G +P P T ++VG LP +T+++ F G
Sbjct: 221 SQNAVVLTNGSSDGGQDNSNEDAPENNPSYT-TVYVGNLPHDVTQAELHCQFHALG---- 275
Query: 98 VVVMYDHNTQRPRGFGFITYDS-EEAVDRVLFKTFHELNGKMVEV---KRAVPKELSPGP 153
V+ + Q +GFGF+ Y++ EEA + + GK ++ + P + P
Sbjct: 276 AGVLEEVRVQSGKGFGFVRYNTHEEAAMAIQMANGRPVRGKTMKCSWGSKPTPPGTASNP 335
Query: 154 IRSPLIGSYNY----GLNR--ASSYLNSYAQGFNMN--PVGGLG----VRMDGRFSLNP 200
+ P Y G+N+ ++ L +Y + ++ V GL ++M G+ L P
Sbjct: 336 LPPPAAQPYQILPTAGMNQGYTAAELLAYQRQLALSQAAVSGLSGQALLQMSGQHGLAP 394
>Medtr1g048080.1 | pentatricopeptide (PPR) repeat protein | HC |
chr1:18204785-18193518 | 20130731
Length = 952
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHN-TQRPRGFGFITYDSEEAVDRVLF 128
KIF+G LP + + + +F QFG I V+++ HN R GFGF+ Y+ E A + +
Sbjct: 160 KIFIGNLPGWVKKQEVSEFFRQFGPINSVILIRGHNDVSRNAGFGFVIYEGETAENSAM- 218
Query: 129 KTFH----ELNGKMVEVK 142
K E +GK++ VK
Sbjct: 219 KAVEFDGVEFHGKVLTVK 236
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 65/146 (44%), Gaps = 29/146 (19%)
Query: 6 TGRARGFGFVVFADPAVAERVIV--------DKHIIDGRTVEAKKAVPRDDQNTLNRQSG 57
+G+++G+GFV F A++ I DK + G + ++ D+ N
Sbjct: 158 SGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERESTGDRAKFN---- 213
Query: 58 SVHGSPGPGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITY 117
+FV L + T+ + K F +FGTIT VVM D + + + FGF+ +
Sbjct: 214 ------------NVFVKNLSESTTDDELKKTFGEFGTITSAVVMRDGDG-KSKCFGFVNF 260
Query: 118 DSEEAVDRVLFKTFHELNGKMVEVKR 143
+S + R + LNGK ++ K
Sbjct: 261 ESTDDAARAV----EALNGKKIDDKE 282
>Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/163 (20%), Positives = 64/163 (39%), Gaps = 37/163 (22%)
Query: 3 DRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGSVHGS 62
D+ +G+++G+GF++F R A+ A+ + NR + S
Sbjct: 161 DKVSGKSKGYGFILFK-----------------RRSGARNALKEPQKKIGNRMTACQLAS 203
Query: 63 PGPGRT--------------------KKIFVGGLPSTITESDFKNYFDQFGTITDVVVMY 102
GP + +KI++ + + +F +FG I + +
Sbjct: 204 IGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKLFGFFSRFGEIEEGPLGL 263
Query: 103 DHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAV 145
D T +P+GF Y S E+ R L + E G ++ ++A+
Sbjct: 264 DKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILHCQKAI 306
>Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/163 (20%), Positives = 64/163 (39%), Gaps = 37/163 (22%)
Query: 3 DRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGSVHGS 62
D+ +G+++G+GF++F R A+ A+ + NR + S
Sbjct: 161 DKVSGKSKGYGFILFK-----------------RRSGARNALKEPQKKIGNRMTACQLAS 203
Query: 63 PGPGRT--------------------KKIFVGGLPSTITESDFKNYFDQFGTITDVVVMY 102
GP + +KI++ + + +F +FG I + +
Sbjct: 204 IGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKLFGFFSRFGEIEEGPLGL 263
Query: 103 DHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAV 145
D T +P+GF Y S E+ R L + E G ++ ++A+
Sbjct: 264 DKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILHCQKAI 306
>Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/163 (20%), Positives = 64/163 (39%), Gaps = 37/163 (22%)
Query: 3 DRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGSVHGS 62
D+ +G+++G+GF++F R A+ A+ + NR + S
Sbjct: 161 DKVSGKSKGYGFILFK-----------------RRSGARNALKEPQKKIGNRMTACQLAS 203
Query: 63 PGPGRT--------------------KKIFVGGLPSTITESDFKNYFDQFGTITDVVVMY 102
GP + +KI++ + + +F +FG I + +
Sbjct: 204 IGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKLFGFFSRFGEIEEGPLGL 263
Query: 103 DHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAV 145
D T +P+GF Y S E+ R L + E G ++ ++A+
Sbjct: 264 DKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILHCQKAI 306
>Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/163 (20%), Positives = 64/163 (39%), Gaps = 37/163 (22%)
Query: 3 DRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGSVHGS 62
D+ +G+++G+GF++F R A+ A+ + NR + S
Sbjct: 161 DKVSGKSKGYGFILFK-----------------RRSGARNALKEPQKKIGNRMTACQLAS 203
Query: 63 PGPGRT--------------------KKIFVGGLPSTITESDFKNYFDQFGTITDVVVMY 102
GP + +KI++ + + +F +FG I + +
Sbjct: 204 IGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKLFGFFSRFGEIEEGPLGL 263
Query: 103 DHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAV 145
D T +P+GF Y S E+ R L + E G ++ ++A+
Sbjct: 264 DKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILHCQKAI 306
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 7/120 (5%)
Query: 3 DRATGRARGFGFVVFADPAVAERVI--VDKHIIDGRTVEAKKAVPRDDQNTLNRQSGSVH 60
+R T +RGFGFV + AE + + + +GR++ KA P+ + ++
Sbjct: 143 NRQTDLSRGFGFVTMSTVEEAESAVEKFNGYDYNGRSLVVNKASPKGSRPERTERAPRTF 202
Query: 61 GSPGPGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 120
+I+V L + S + F + G I V+YD T R RGFGF+T E
Sbjct: 203 EP-----VLRIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDE 257