Miyakogusa Predicted Gene

Lj2g3v3209580.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3209580.2 Non Characterized Hit- tr|B4FN51|B4FN51_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,71.01,3e-19,GrpE,GrpE
nucleotide exchange factor; GRPE PROTEIN, MITOCHONDRIAL,NULL; GRPE
PROTEIN,GrpE nucleotide,CUFF.39870.2
         (192 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g054220.1 | co-chaperone GrpE family protein | HC | chr3:2...   136   1e-32
Medtr5g093770.1 | co-chaperone GrpE family protein | HC | chr5:4...   119   2e-27

>Medtr3g054220.1 | co-chaperone GrpE family protein | HC |
           chr3:21503466-21508219 | 20130731
          Length = 300

 Score =  136 bits (343), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/201 (48%), Positives = 113/201 (56%), Gaps = 28/201 (13%)

Query: 1   MFVNKLLTRISRTVSRTSLLSASQRPQ--------QFHSLLPQSPNKLISAQANLL-CPT 51
           M V ++L+R SRT +   LLSAS +PQ        QF +   Q PNKLI  QANLL  P 
Sbjct: 1   MSVYRVLSRASRTFT---LLSASHKPQPLSTNFFHQFSTFPHQLPNKLIPIQANLLYSPI 57

Query: 52  ISSLTPRFGFSSSPXXXXXXXXXXXHQHNGSSSTDDPIKTSEEAKKVDQDGQAKPVXXXX 111
            SSLTPRFGFSSS               +  SS+DDP KTSE+AK VDQ+ + K      
Sbjct: 58  SSSLTPRFGFSSS--------------ASPESSSDDPAKTSEKAKVVDQNEEDK--REGQ 101

Query: 112 XXXXXXXXXXXCDLSREDLIXXXXXXXXXXXXXXXXXXXMHDKVLRTYAEMENIKDRTRR 171
                      CDLSR++LI                   M DKVLRTYAEMEN+ DRT R
Sbjct: 102 SSESDSDVEIECDLSRDELIKLVTEKEALLKLKHKEVEKMQDKVLRTYAEMENVMDRTNR 161

Query: 172 EAENSKKFAIQNFAKSLLDVA 192
            AE+SKKFAIQ+FAKSLLDVA
Sbjct: 162 NAESSKKFAIQSFAKSLLDVA 182


>Medtr5g093770.1 | co-chaperone GrpE family protein | HC |
           chr5:40939973-40943162 | 20130731
          Length = 311

 Score =  119 bits (298), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/176 (42%), Positives = 88/176 (50%), Gaps = 24/176 (13%)

Query: 40  LISAQANLLCPTISSLTPRFGFSSSPXXXXXXXXXXXHQHNGSSSTDDPIKTSEEAKKVD 99
           L   Q N LCP+I+S T +FGFSSS            + HNG+ ++ DP KTSEEA+++D
Sbjct: 19  LFPVQVNFLCPSINSSTSKFGFSSS-ASVETEGKEGNNVHNGNFTSADPAKTSEEAEEID 77

Query: 100 QDGQAKPVXXXXXXXXXXXXXXXCDLSR-----------------------EDLIXXXXX 136
           Q GQAK                   + R                       +DLI     
Sbjct: 78  QPGQAKSADQTEESGSISADSHSQTVKRRRRSIKRTAFSDSDSDSESDLSRDDLIKLVAE 137

Query: 137 XXXXXXXXXXXXXXMHDKVLRTYAEMENIKDRTRREAENSKKFAIQNFAKSLLDVA 192
                         M DKVLRTYAEMEN+ DRTRREAENS+KFAIQNFAKSLLDVA
Sbjct: 138 KEELLKLKKKEIEKMQDKVLRTYAEMENVMDRTRREAENSRKFAIQNFAKSLLDVA 193