Miyakogusa Predicted Gene
- Lj2g3v3188410.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v3188410.1 Non Characterized Hit- tr|I3SWY8|I3SWY8_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,98.41,0,Rcd1,Cell
differentiation, Rcd1-like; SUBFAMILY NOT NAMED,NULL;
UNCHARACTERIZED,Cell differentiation,CUFF.39850.1
(314 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g053170.1 | cell differentiation RCD1-like protein | HC | ... 387 e-108
Medtr6g065170.1 | cell differentiation RCD1-like protein | LC | ... 282 2e-76
Medtr8g106940.1 | cell differentiation RCD1-like protein | LC | ... 276 2e-74
Medtr1g056470.1 | cell differentiation RCD1-like protein | HC | ... 248 6e-66
Medtr5g093460.1 | cell differentiation RCD1-like protein | LC | ... 245 5e-65
Medtr3g018640.1 | cell differentiation RCD1-like protein | LC | ... 238 5e-63
Medtr1g043540.1 | cell differentiation RCD1-like protein | LC | ... 113 2e-25
>Medtr3g053170.1 | cell differentiation RCD1-like protein | HC |
chr3:21111161-21103726 | 20130731
Length = 306
Score = 387 bits (994), Expect = e-108, Method: Compositional matrix adjust.
Identities = 190/279 (68%), Positives = 225/279 (80%), Gaps = 2/279 (0%)
Query: 37 QLILELSNPDHRENALHELSKKREVVQDLAPLIWNSFGTIAALLQEITSVYPVISPPTLS 96
QL+LELSNP+ RENAL ELSKKRE QDLAPL+WNSFGTIAALLQEI S+YPV+SPP L+
Sbjct: 27 QLVLELSNPELRENALLELSKKREQFQDLAPLLWNSFGTIAALLQEIVSIYPVLSPPNLT 86
Query: 97 PAQSNRVCNALALLQYVASHRDTRXXXXXXXXXXXXXPFLKTTSKAKPFEYLRLTSLGVI 156
PAQSNRVCNALALLQ VASH DTR PFL TTSK++PFEYLRLTSLGVI
Sbjct: 87 PAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVI 146
Query: 157 GALVKVEDVEIISFLLSTEIIPLCLHTMEIGTVLSKTVSTFIIQRVLSHHVGKEYVFARP 216
GALVKV+D E+ISFLLSTEIIPLCL TME+G+ LSKTV+TFI+Q++L VG +Y+
Sbjct: 147 GALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTA 206
Query: 217 DRFFAIGQVLGKVVAFLVEQPSIRLLKHVIRCYLLLSEHWRGVEALSSCLPEMFRDGTFS 276
+RFFA+G+VLG +VA L EQPS RLLKH+IRCYL LS++ R +AL SCLP+M RD TFS
Sbjct: 207 ERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFS 266
Query: 277 NLLREDPDLMRFLQQLLHKV--NQVPAPQAGEGYNHMMV 313
+ LREDP ++LQQL+H V N+VPA Q G G++H+MV
Sbjct: 267 SCLREDPTTRKWLQQLIHNVGGNRVPALQGGGGFDHLMV 305
>Medtr6g065170.1 | cell differentiation RCD1-like protein | LC |
chr6:24130941-24126811 | 20130731
Length = 323
Score = 282 bits (722), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 155/312 (49%), Positives = 202/312 (64%), Gaps = 4/312 (1%)
Query: 5 PQSLSITASTSS-QPRNTAVKDRETVATERIVVQLILELSNPDHRENALHELSKKREVVQ 63
P SLS+ +SS P + + R T + +L++ELSNPD RENAL LSK+ E+ Q
Sbjct: 6 PHSLSMKNESSSVAPIGASAQSRTIAQTMTYMERLVIELSNPDLRENALRVLSKRNELSQ 65
Query: 64 DLAPLIWNSFGTIAALLQEITSVYPVISPPTLSPAQSNRVCNALALLQYVASHRDTRXXX 123
+LA L+WNSFGTIA LLQEITS+Y + PPTL+ AQS RVCN LALLQY+ASH +TR
Sbjct: 66 ELAHLLWNSFGTIAILLQEITSIYCTLLPPTLTLAQSTRVCNVLALLQYLASHSETRMLF 125
Query: 124 XXXXXXXXXXPFLKTTSKAKPFEYLRLTSLGVIGALVKVEDVEIISFLLSTEIIPLCLHT 183
PFLKT K+ FEYLR SLGVIGALVKV E++ +L+ +EIIPLCL
Sbjct: 126 LNASMPLYLYPFLKTKEKSPQFEYLRFASLGVIGALVKVNTKEVLGYLILSEIIPLCLSN 185
Query: 184 MEIGTVLSKTVSTFIIQRVLSHHVGKEYVFARPDRFFAIGQVLGKVVAFLVEQPSIRLLK 243
MEIG +SKT +TFI Q++L G YV A +RFFA+ +VL + L +QP+ RLLK
Sbjct: 186 MEIGNEISKTTATFIFQKILFDDDGLAYVCATAERFFAVRRVLDMMSESLDKQPTCRLLK 245
Query: 244 HVIRCYLLLS-EHWRGVEALSSCLPEMFRDGTFSNLLREDPDLMRFLQQLLHKVNQVPAP 302
++I CY LS + W G+ AL++ LP +FRD F N +REDP +++ L V + P
Sbjct: 246 YIIPCYARLSNDRWAGI-ALANSLPSVFRDTIFLNRVREDPTTWEWVKHLQENVRKNQEP 304
Query: 303 Q-AGEGYNHMMV 313
AG G N+ +V
Sbjct: 305 LVAGGGENNDIV 316
>Medtr8g106940.1 | cell differentiation RCD1-like protein | LC |
chr8:45158277-45161780 | 20130731
Length = 323
Score = 276 bits (706), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 152/311 (48%), Positives = 196/311 (63%), Gaps = 3/311 (0%)
Query: 5 PQSLSITASTSS-QPRNTAVKDRETVATERIVVQLILELSNPDHRENALHELSKKREVVQ 63
P SLS+ +SS P + + R T T V L+ EL NP+ RENAL LSK+ E+ +
Sbjct: 6 PHSLSMKNESSSVAPLGASTQSRTTAQTMTFVEHLVTELINPNLRENALRVLSKRNELSR 65
Query: 64 DLAPLIWNSFGTIAALLQEITSVYPVISPPTLSPAQSNRVCNALALLQYVASHRDTRXXX 123
+LAPL+WNSFGTIA LLQEITS+Y +SPPTL+ QS R CN LALLQ VASH +TR
Sbjct: 66 ELAPLLWNSFGTIAVLLQEITSIYCTLSPPTLTLGQSTRACNVLALLQCVASHSETRMLF 125
Query: 124 XXXXXXXXXXPFLKTTSKAKPFEYLRLTSLGVIGALVKVEDVEIISFLLSTEIIPLCLHT 183
PFLKT K+ FEYLRL SLGVIGALVK E++ +L+ +E+IPLCL
Sbjct: 126 LNASIPLYLYPFLKTKDKSPQFEYLRLASLGVIGALVKDNTKEVLGYLILSEVIPLCLSN 185
Query: 184 MEIGTVLSKTVSTFIIQRVLSHHVGKEYVFARPDRFFAIGQVLGKVVAFLVEQPSIRLLK 243
MEIG +S+T +TFII ++L G YV A +RFFA+ +VL + L +QP+ RLLK
Sbjct: 186 MEIGNEISQTAATFIIHKILFDDDGLAYVCATAERFFAVRRVLDMMFESLDKQPTPRLLK 245
Query: 244 HVIRCYLLLSEHWRGVEALSSCLPEMFRDGTFSNLLREDPDLMRFLQQLLHKV--NQVPA 301
+I CY LS+ R AL++ LP +FRD F N LREDP ++++ L V NQ P
Sbjct: 246 FIIPCYARLSDGRRAGIALANSLPSVFRDTIFLNHLREDPATWKWVKHLQENVEKNQEPL 305
Query: 302 PQAGEGYNHMM 312
+ G N +M
Sbjct: 306 VEGGGENNDIM 316
>Medtr1g056470.1 | cell differentiation RCD1-like protein | HC |
chr1:24747585-24743876 | 20130731
Length = 265
Score = 248 bits (633), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 121/218 (55%), Positives = 157/218 (72%)
Query: 38 LILELSNPDHRENALHELSKKREVVQDLAPLIWNSFGTIAALLQEITSVYPVISPPTLSP 97
L++ELSNPD RENALH LSK ++ +DLAPL+WNS GTIA LQEI ++YP +SP L+P
Sbjct: 36 LVIELSNPDLRENALHLLSKMTDLFRDLAPLLWNSIGTIAIFLQEIITIYPALSPENLTP 95
Query: 98 AQSNRVCNALALLQYVASHRDTRXXXXXXXXXXXXXPFLKTTSKAKPFEYLRLTSLGVIG 157
+QS R+CN LALLQ VASH DT+ PFL T++K PFE LRL SLGVI
Sbjct: 96 SQSTRICNTLALLQCVASHPDTKLSFMKANIPIYLYPFLNTSNKLAPFEDLRLASLGVIA 155
Query: 158 ALVKVEDVEIISFLLSTEIIPLCLHTMEIGTVLSKTVSTFIIQRVLSHHVGKEYVFARPD 217
A+VKV+ E I FLL+TE++PLCL MEIG LSKTV+TFI++++LS G Y+ PD
Sbjct: 156 AMVKVKTKEAIGFLLATEVMPLCLRNMEIGKELSKTVATFIVEKILSDDDGLAYICGTPD 215
Query: 218 RFFAIGQVLGKVVAFLVEQPSIRLLKHVIRCYLLLSEH 255
RFFA+G+ L +++A + QPS RLLK +I CY L+++
Sbjct: 216 RFFAVGRALDRMLASVDNQPSPRLLKLMIPCYTSLTKN 253
>Medtr5g093460.1 | cell differentiation RCD1-like protein | LC |
chr5:40820316-40804416 | 20130731
Length = 437
Score = 245 bits (625), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 138/304 (45%), Positives = 182/304 (59%), Gaps = 2/304 (0%)
Query: 5 PQSLSITASTS-SQPRNTAVKDRETVATERIVVQLILELSNPDHRENALHELSKKREVVQ 63
P+S+S + S + P + + T + +L++EL NPD R NALH LSK Q
Sbjct: 135 PRSMSTKSDASFAAPLEASTQFNTTAHRMVDMKRLVIELRNPDLRANALHVLSKMTSF-Q 193
Query: 64 DLAPLIWNSFGTIAALLQEITSVYPVISPPTLSPAQSNRVCNALALLQYVASHRDTRXXX 123
+LAPL+WNSFGTI L+QEI S+YP +S L+P QS R+C+ LALL VASH T+
Sbjct: 194 ELAPLLWNSFGTITILVQEIISIYPTLSSENLTPTQSTRMCDVLALLMCVASHPTTKMSF 253
Query: 124 XXXXXXXXXXPFLKTTSKAKPFEYLRLTSLGVIGALVKVEDVEIISFLLSTEIIPLCLHT 183
PFL+TTS+ +E+LRL SLGVIGALVKV E++SFLL EIIPLCL
Sbjct: 254 LNANMHLYLYPFLQTTSELTQYEWLRLGSLGVIGALVKVNTKEVMSFLLPNEIIPLCLGC 313
Query: 184 MEIGTVLSKTVSTFIIQRVLSHHVGKEYVFARPDRFFAIGQVLGKVVAFLVEQPSIRLLK 243
ME SK+V TFIIQ++L + G YV ++FF + +V +++ L Q S RLLK
Sbjct: 314 MENDKEPSKSVGTFIIQKMLLDNAGLAYVCDTAEQFFTVARVFDMMLSSLKNQHSPRLLK 373
Query: 244 HVIRCYLLLSEHWRGVEALSSCLPEMFRDGTFSNLLREDPDLMRFLQQLLHKVNQVPAPQ 303
+IRCY LSEH R +AL+SCLP M +D F N L ED R +++L + A
Sbjct: 374 LIIRCYSRLSEHSRARDALTSCLPNMLKDFNFINCLYEDSTTWRCIKKLYENLGMNQASL 433
Query: 304 AGEG 307
G
Sbjct: 434 VPSG 437
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/128 (56%), Positives = 87/128 (67%), Gaps = 1/128 (0%)
Query: 37 QLILELSNPDHRENALHELSKKREVVQDLAPLIWNSFGTIAALLQEITSVYPVISPPTLS 96
+L++ELSNPD RENAL LSK + +LAPL+WNS+GTIA LQEITS+YP I L+
Sbjct: 6 RLVIELSNPDLRENALRVLSKD-GLFPELAPLLWNSYGTIAIFLQEITSIYPTIQLLNLT 64
Query: 97 PAQSNRVCNALALLQYVASHRDTRXXXXXXXXXXXXXPFLKTTSKAKPFEYLRLTSLGVI 156
AQS RVCN LALLQ VASH T+ PFL+T S+ FE+ RL SLGVI
Sbjct: 65 QAQSTRVCNVLALLQCVASHSGTKMSFLDANMPLYFYPFLQTISELAQFEHFRLVSLGVI 124
Query: 157 GALVKVED 164
G LVK+E+
Sbjct: 125 GVLVKIEN 132
>Medtr3g018640.1 | cell differentiation RCD1-like protein | LC |
chr3:5122017-5115864 | 20130731
Length = 301
Score = 238 bits (608), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 135/296 (45%), Positives = 179/296 (60%), Gaps = 7/296 (2%)
Query: 5 PQSLSIT--ASTSSQPRNTAVKDRETVATERIVV--QLILELSNPDHRENALHELSKKRE 60
PQSLS AS + P ++ + + +R+ L++ELSNPD RENAL+ LSK +
Sbjct: 6 PQSLSTKNDASFIAFPGDST---QSSTTDQRMAYMQSLVIELSNPDLRENALYVLSKSTK 62
Query: 61 VVQDLAPLIWNSFGTIAALLQEITSVYPVISPPTLSPAQSNRVCNALALLQYVASHRDTR 120
+ + L PL+WN+ GTIA LQEI S+YP +SPP LSP+QS RVC+ LALLQ VASH DTR
Sbjct: 63 LFEGLGPLLWNTVGTIAVFLQEIISIYPTLSPPNLSPSQSTRVCHVLALLQCVASHPDTR 122
Query: 121 XXXXXXXXXXXXXPFLKTTSKAKPFEYLRLTSLGVIGALVKVEDVEIISFLLSTEIIPLC 180
PFLKTTSK FE LR+ SLGVIG +KV E I F LS+EII LC
Sbjct: 123 ISFLNANMPLYLYPFLKTTSKLAHFEKLRVASLGVIGGSMKVNTKEAIGFYLSSEIISLC 182
Query: 181 LHTMEIGTVLSKTVSTFIIQRVLSHHVGKEYVFARPDRFFAIGQVLGKVVAFLVEQPSIR 240
L M+ G L+K V+TFII +++ G V A + FF + +VL ++ L PS R
Sbjct: 183 LSNMQNGNELTKIVATFIILKIILDDDGLARVCATTENFFGVCRVLNMMLEDLENPPSPR 242
Query: 241 LLKHVIRCYLLLSEHWRGVEALSSCLPEMFRDGTFSNLLREDPDLMRFLQQLLHKV 296
LL+ +I CY LS+++R AL++ LP +D N R+DP MR + +L V
Sbjct: 243 LLRLLISCYSRLSQNYRARVALTTYLPNRLKDANLINFFRDDPKTMRLVLELHENV 298
>Medtr1g043540.1 | cell differentiation RCD1-like protein | LC |
chr1:16340754-16341868 | 20130731
Length = 136
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/121 (52%), Positives = 84/121 (69%), Gaps = 1/121 (0%)
Query: 140 SKAKPFEYLRLTSLGVIGALVKVEDVEIISFLLSTEIIPLCLHTMEIGTVLSKTVSTFII 199
SK FEYLRLTSL VI ALVKV+ E+I FLLS+EIIPLCLH MEIG LSK +++F+I
Sbjct: 9 SKLTQFEYLRLTSLVVIDALVKVKTKEVIDFLLSSEIIPLCLHNMEIGEELSK-ITSFMI 67
Query: 200 QRVLSHHVGKEYVFARPDRFFAIGQVLGKVVAFLVEQPSIRLLKHVIRCYLLLSEHWRGV 259
Q++L + YV+ ++F ++ ++L ++ L QPS RLLK + YL LS+H R V
Sbjct: 68 QKILLDNDSLAYVYDTREQFSSVTRLLDMMLTSLENQPSPRLLKLIFSIYLRLSQHRRLV 127
Query: 260 E 260
E
Sbjct: 128 E 128