Miyakogusa Predicted Gene

Lj2g3v3188370.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3188370.1 Non Characterized Hit- tr|J3L0R3|J3L0R3_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB01G2,37.97,5e-16,DUF761,Protein of unknown function DUF761,
plant; DUF4408,Domain of unknown function DUF4408; seg,NU,CUFF.39848.1
         (187 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g093440.1 | DUF4408 domain protein | LC | chr5:40793192-40...   152   2e-37
Medtr5g093430.1 | DUF4408 domain protein | LC | chr5:40785117-40...   151   4e-37
Medtr3g053160.1 | DUF4408 domain protein | HC | chr3:21098828-21...    96   2e-20

>Medtr5g093440.1 | DUF4408 domain protein | LC |
           chr5:40793192-40794030 | 20130731
          Length = 198

 Score =  152 bits (384), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/189 (48%), Positives = 107/189 (56%), Gaps = 7/189 (3%)

Query: 3   NKVDKSQXXXXXXXXXXXXITPFLPSSLKPTYLYFILNILIISLGAEAGLLSAFSKPFED 62
           NKVDKSQ            ITPFLPS L+P+YLY I N+LII+LGAEAGLLS FS+P ED
Sbjct: 4   NKVDKSQVIVLSFLAFLLVITPFLPSFLRPSYLYLIFNLLIIALGAEAGLLSVFSEPSED 63

Query: 63  RKQHVSPVFPVSQKPDMPSE-----IIPXXXXXXXXXXXXKKPKNVENFSSEKI--LRVI 115
           RKQH+S           P E     I+             K     ++ S +KI  + V 
Sbjct: 64  RKQHISASVTQKHVSLEPQEKEARGIVNNACSVSQEQKEKKPKVVEKSTSEKKIVFVGVT 123

Query: 116 KVYKMKKCASMPSLFFIGGGEAXXXXXXXXXXXXXXVGGVNAQELFAKAEAFIGNFYKQL 175
           KV KMKKC SM S+FFI  GE               + GVN QELFAKAEAFIGNFYKQL
Sbjct: 124 KVEKMKKCPSMASIFFIEDGEDDLEVKNEEVEVEDEIYGVNGQELFAKAEAFIGNFYKQL 183

Query: 176 KMQREEHMI 184
           KMQRE+  +
Sbjct: 184 KMQREKSCV 192


>Medtr5g093430.1 | DUF4408 domain protein | LC |
           chr5:40785117-40786354 | 20130731
          Length = 194

 Score =  151 bits (381), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 99/188 (52%), Positives = 110/188 (58%), Gaps = 10/188 (5%)

Query: 3   NKVDKSQXXXXXXXXXXXXITPFLPSSLKPTYLYFILNILIISLGAEAGLLSAFSKPFED 62
           NKV+KSQ            ITP LPSSL+PTYLY I NILII+LGAEAGLLS  S+P ED
Sbjct: 4   NKVNKSQVIVLSILLLLLVITPLLPSSLRPTYLYLIFNILIIALGAEAGLLSVLSEPSED 63

Query: 63  RKQHVSPVFP----VSQKPDMPSEIIPXXXXXXXXXXXXKKPKNVENFSSEKIL-----R 113
           +KQHVS   P    + Q+    S II              KPK VE   SEK +      
Sbjct: 64  KKQHVSVTQPKHEMLEQEEKEASNII-NNAYSVSEEQNENKPKVVEKSVSEKKIVYVDVG 122

Query: 114 VIKVYKMKKCASMPSLFFIGGGEAXXXXXXXXXXXXXXVGGVNAQELFAKAEAFIGNFYK 173
           V KV K+KKC SMPS+FFI  GE               + GVN QELFAKAEAFIGNFYK
Sbjct: 123 VSKVDKVKKCPSMPSIFFIEDGEDDLEVKDEEVEVEDEICGVNGQELFAKAEAFIGNFYK 182

Query: 174 QLKMQREE 181
           QLKMQREE
Sbjct: 183 QLKMQREE 190


>Medtr3g053160.1 | DUF4408 domain protein | HC |
           chr3:21098828-21099340 | 20130731
          Length = 170

 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/184 (38%), Positives = 89/184 (48%), Gaps = 21/184 (11%)

Query: 3   NKVDKSQXXXXXXXXXXXXITPFLPSSLKPTYLYFILNILIISLGAEAGLLSAFSKPFED 62
           NK  KSQ              P LPSSLK TYLYFI N +II L +EAGL S   KP ED
Sbjct: 2   NKFKKSQVLVLFVLLLFLAFIPLLPSSLKSTYLYFISNFIIIVLASEAGLFSLLYKPLED 61

Query: 63  RKQHVSPVFPVSQKPDMPSEIIPXXXXXXXXXXX---XKKPKNVENFSS--EKILRVIKV 117
           + Q  S +    +KP  PS+                  K+ K VE  +S  E+++   KV
Sbjct: 62  KMQSSSLI----KKPITPSDGYSEKKEATISSVSKHVEKRLKPVEKSASETERVVSFTKV 117

Query: 118 YKMKKCASMPSLFFIGGGEAXXXXXXXXXXXXXXVGGVNAQELFAKAEAFIGNFYKQLKM 177
             +KK        FIG GE               + G+N QEL+ KA+ FI NFYKQLK+
Sbjct: 118 DIVKKST------FIGSGE------DDDIEIQEEIEGLNGQELYVKADVFIRNFYKQLKL 165

Query: 178 QREE 181
           Q++E
Sbjct: 166 QKDE 169