Miyakogusa Predicted Gene

Lj2g3v3184230.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3184230.2 Non Characterized Hit- tr|D7LB00|D7LB00_ARALL
Putative uncharacterized protein OS=Arabidopsis lyrata,76.27,7e-19,DNA
repair protein MutS, domain III,DNA mismatch repair protein MutS,
core; MutS_III,DNA mismatch re,CUFF.39832.2
         (67 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g093110.1 | DNA mismatch repair protein MutS | HC | chr5:4...   113   5e-26
Medtr6g086270.1 | DNA mismatch repair protein msh6 | HC | chr6:3...    47   4e-06

>Medtr5g093110.1 | DNA mismatch repair protein MutS | HC |
           chr5:40657110-40644297 | 20130731
          Length = 810

 Score =  113 bits (282), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 54/59 (91%), Positives = 55/59 (93%)

Query: 9   QCVTPMGRRLLRNWFLRPILDLEVLNYRLNSISFFLCSEELVVSLRETLKSVKDIPHLL 67
           +CVTPMGRRLLR WFLRPILDLEVLNYRLNSISFF  SEELV SLRETLKSVKDIPHLL
Sbjct: 224 KCVTPMGRRLLRQWFLRPILDLEVLNYRLNSISFFHSSEELVASLRETLKSVKDIPHLL 282


>Medtr6g086270.1 | DNA mismatch repair protein msh6 | HC |
           chr6:32387897-32378956 | 20130731
          Length = 1155

 Score = 47.0 bits (110), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 34/58 (58%)

Query: 10  CVTPMGRRLLRNWFLRPILDLEVLNYRLNSISFFLCSEELVVSLRETLKSVKDIPHLL 67
           CVT  G+RLLRNW   P+ D E +N RL+ +   + S  +V  + + L+ + D+  LL
Sbjct: 638 CVTSSGKRLLRNWICCPLKDAEGINNRLDVVDHLIASPVIVSHIAQHLRKLPDLELLL 695