Miyakogusa Predicted Gene

Lj2g3v3151900.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3151900.1 Non Characterized Hit- tr|I1N8D8|I1N8D8_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,29.67,0.00000008,zf-RVT,Reverse transcriptase zinc-binding
domain,CUFF.39795.1
         (95 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g115470.1 | DUF674 family protein | LC | chr1:52155126-521...    49   1e-06
Medtr5g013360.1 | hypothetical protein | LC | chr5:4225778-42225...    46   6e-06

>Medtr1g115470.1 | DUF674 family protein | LC |
           chr1:52155126-52152478 | 20130731
          Length = 443

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 10/83 (12%)

Query: 19  WKASSNGVISVKSRCEVQCGSELQEDC------SMFKLLWTIAAPSNILSFTWRVILGRI 72
           W+A   G  +VKS+  +  G  + E+        +F  LW     S  L+F+W+ +L RI
Sbjct: 309 WRAEDGGEFTVKSKYRLLEGLVVLEENLDIVAEQVFSFLW----KSLTLAFSWKPLLDRI 364

Query: 73  LTKENLKKRSVIQPRTKCICVLC 95
            T  NL  R VI P +  +CVLC
Sbjct: 365 PTGRNLAWRKVIDPESSTVCVLC 387


>Medtr5g013360.1 | hypothetical protein | LC | chr5:4225778-4222560
           | 20130731
          Length = 252

 Score = 46.2 bits (108), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 6/78 (7%)

Query: 13  TKDFRIWKASSNGVISVKS---RCEVQC---GSELQEDCSMFKLLWTIAAPSNILSFTWR 66
            +D R W     GV +VKS   + EV         +E+  +FK LW + APS +++FTW+
Sbjct: 135 AEDGRKWSLEDTGVFTVKSAYNKLEVLVLVEDRWREEERRVFKSLWKVPAPSKVVAFTWK 194

Query: 67  VILGRILTKENLKKRSVI 84
           V+L RI +K N   R+V+
Sbjct: 195 VLLDRIPSKVNRANRNVL 212