Miyakogusa Predicted Gene

Lj2g3v3149380.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3149380.1 Non Characterized Hit- tr|I3SHL6|I3SHL6_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4
SV=1,97.73,2e-16,Tmemb_14,Uncharacterised protein family UPF0136,
Transmembrane,CUFF.40531.1
         (119 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g092160.1 | transmembrane protein 14C | HC | chr5:40248249...   164   2e-41
Medtr7g090890.1 | transmembrane protein 14C | HC | chr7:35808207...    57   4e-09

>Medtr5g092160.1 | transmembrane protein 14C | HC |
           chr5:40248249-40245870 | 20130731
          Length = 121

 Score =  164 bits (415), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 79/121 (65%), Positives = 92/121 (76%), Gaps = 2/121 (1%)

Query: 1   MHDFCFTIPYGLLLVGGGAFGYIHKXXXXXXXXXXXXXXXXXXXXYISLNAFGKRKNSYF 60
           MHDFCFTIPYGL+LVGGG FG+IHK                    Y+SLNAFGKRKNSY 
Sbjct: 1   MHDFCFTIPYGLVLVGGGLFGFIHKGSTASLAGGVGTGLLLILAGYLSLNAFGKRKNSYL 60

Query: 61  ALFLETVCATALTWVMGQRYMETSKVMPAGVVAGISGLMTLFYLYKLATGGNHLP--AKA 118
           AL +E +CA  LTW+MGQRY++TSK+MPAG++AG+S LMTLFYLYKLATGGNH+P  AKA
Sbjct: 61  ALAIEILCAGVLTWIMGQRYLQTSKIMPAGMIAGLSALMTLFYLYKLATGGNHIPATAKA 120

Query: 119 D 119
           D
Sbjct: 121 D 121


>Medtr7g090890.1 | transmembrane protein 14C | HC |
           chr7:35808207-35811560 | 20130731
          Length = 231

 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 51/117 (43%)

Query: 1   MHDFCFTIPYGLLLVGGGAFGYIHKXXXXXXXXXXXXXXXXXXXXYISLNAFGKRKNSYF 60
           +HDFCF IP+G  +  GG  G++                        SL  + + K+S  
Sbjct: 107 IHDFCFGIPFGGYVTTGGIIGFLFSRNPATLASGVLFGGALLFLSTFSLKVWRQGKSSLP 166

Query: 61  ALFLETVCATALTWVMGQRYMETSKVMPAGVVAGISGLMTLFYLYKLATGGNHLPAK 117
            +  +   A  L W   Q Y    K+ P G+ A IS  M +FY+Y L +GGN  P K
Sbjct: 167 FILGQAALAGILFWKNFQSYSLAKKIFPTGISAIISSAMLVFYVYVLLSGGNPPPKK 223