Miyakogusa Predicted Gene

Lj2g3v3122080.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3122080.1 Non Characterized Hit- tr|I1JJ66|I1JJ66_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.29256 PE,86.99,0,KIN17
(KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG),NULL;
coiled-coil,NULL; Kin17_mid,DNA/RNA,CUFF.39782.1
         (369 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g092130.1 | DNA/RNA-binding protein Kin17, motif protein |...   598   e-171
Medtr1g038340.2 | DExH-box splicing factor-binding site protein ...    55   2e-07
Medtr1g038340.1 | DExH-box splicing factor-binding site protein ...    55   2e-07

>Medtr5g092130.1 | DNA/RNA-binding protein Kin17, motif protein | HC
           | chr5:40230000-40233671 | 20130731
          Length = 398

 Score =  598 bits (1541), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 291/369 (78%), Positives = 311/369 (84%), Gaps = 1/369 (0%)

Query: 1   MCQKQCRDENGFKCHCMSEGHQRQMQVFGQNPTRIIDGYSEEFEKTFLEHMKRSHRFSRI 60
           MCQKQCRDENGFKCHCMSEGHQRQMQ+FGQNPTRII+GY+EEFE TFLEHMKRSHRFSR+
Sbjct: 30  MCQKQCRDENGFKCHCMSEGHQRQMQIFGQNPTRIIEGYTEEFETTFLEHMKRSHRFSRV 89

Query: 61  AATVVYNEYINDRHHVHMNSTEWATLTDFVKYLGRTGKCKVDETPKGWFITYIDRDSETL 120
           AATVVYNEYINDR+HVHMNSTEWATLT+FVKYLGRTGKCKV+ETPKGWFITYIDRDSETL
Sbjct: 90  AATVVYNEYINDRNHVHMNSTEWATLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETL 149

Query: 121 FKEKMKNKRIKADMADEEKQEREIMKQIEKAEQLMQPPNSDSDQ-TSQAEPPREFNVEDG 179
           FKEKMKNKRIKAD+ DEEKQE+EI KQIE+AEQ+MQ  N +SDQ +SQ +  +E NVEDG
Sbjct: 150 FKEKMKNKRIKADLVDEEKQEKEIQKQIERAEQMMQQSNPESDQPSSQVQTTKELNVEDG 209

Query: 180 VKIGFSLGTSARPGTKEKREESRVAFDEVXXXXXXXXXXXXXXXXXXIGGGKSALXXXXX 239
            KIGFSLG+SA+P TKE  + SR+ FDEV                   GGGKSAL     
Sbjct: 210 TKIGFSLGSSAKPVTKETGDASRIVFDEVDEEKYEERNPKNNLKRKESGGGKSALEEMIR 269

Query: 240 XXXXXXXXXXXXXYWLHEGIVVKVMSKALAEKGYYKQKGVVRKVIDKYVGEIEMLESKHV 299
                        YWLHEGIVVKVMSK LAEKGYYKQKGVV+KVIDKYVGEIEMLESKHV
Sbjct: 270 EEERIKEKNNRKDYWLHEGIVVKVMSKVLAEKGYYKQKGVVKKVIDKYVGEIEMLESKHV 329

Query: 300 LRVDQVELETVIPQVGGRVKIVNGAYRGSLARLLGVDTDHFCAKVQIEKGPYDGRVLKAV 359
           LRVDQ ELETVIPQVGGRVKIVNGAYRGSLARLLGVDTD FCAKVQIEKG YDGRVLKAV
Sbjct: 330 LRVDQEELETVIPQVGGRVKIVNGAYRGSLARLLGVDTDRFCAKVQIEKGAYDGRVLKAV 389

Query: 360 EYEDICKVA 368
           EYEDICKVA
Sbjct: 390 EYEDICKVA 398


>Medtr1g038340.2 | DExH-box splicing factor-binding site protein |
           HC | chr1:14166247-14162322 | 20130731
          Length = 385

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 1/93 (1%)

Query: 254 WLHEGIVVKVMSKALAEKGYYKQKGVVRKVIDKYVGEIEMLESKHVLR-VDQVELETVIP 312
           WL   I V+V+S++L     Y +KG V  VI     +I M ES+ +++ V Q  LET IP
Sbjct: 266 WLTSHIRVRVISRSLKGGRLYLKKGEVLDVIGPTTCDISMDESREIIQGVSQDMLETAIP 325

Query: 313 QVGGRVKIVNGAYRGSLARLLGVDTDHFCAKVQ 345
           + GG V +++G ++G+   L+  D+D     V+
Sbjct: 326 RRGGPVLVLSGRHKGAFGSLIERDSDKGIGTVK 358


>Medtr1g038340.1 | DExH-box splicing factor-binding site protein |
           HC | chr1:14165870-14163866 | 20130731
          Length = 385

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 1/93 (1%)

Query: 254 WLHEGIVVKVMSKALAEKGYYKQKGVVRKVIDKYVGEIEMLESKHVLR-VDQVELETVIP 312
           WL   I V+V+S++L     Y +KG V  VI     +I M ES+ +++ V Q  LET IP
Sbjct: 266 WLTSHIRVRVISRSLKGGRLYLKKGEVLDVIGPTTCDISMDESREIIQGVSQDMLETAIP 325

Query: 313 QVGGRVKIVNGAYRGSLARLLGVDTDHFCAKVQ 345
           + GG V +++G ++G+   L+  D+D     V+
Sbjct: 326 RRGGPVLVLSGRHKGAFGSLIERDSDKGIGTVK 358