Miyakogusa Predicted Gene

Lj2g3v3105900.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3105900.1 Non Characterized Hit- tr|I1JDH7|I1JDH7_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.48939
PE,87.76,0,Beta-Casp,Beta-Casp domain;
Lactamase_B,Beta-lactamase-like;
Metallo-hydrolase/oxidoreductase,NULL; ,CUFF.39714.1
         (392 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g032500.1 | cleavage and polyadenylation specificity facto...   741   0.0  
Medtr1g032500.2 | cleavage and polyadenylation specificity facto...   724   0.0  
Medtr2g006180.1 | cleavage and polyadenylation specificity facto...   263   2e-70
Medtr1g050492.1 | cleavage and polyadenylation specificity facto...   134   2e-31

>Medtr1g032500.1 | cleavage and polyadenylation specificity factor,
           putative | HC | chr1:11561666-11549764 | 20130731
          Length = 534

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/393 (88%), Positives = 366/393 (93%), Gaps = 1/393 (0%)

Query: 1   MAIETLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGHLDHRRYPDFSLIS-QGHYDAAL 59
           M IE LVLGAGQEVGKSCV+V INGKRIMFDCGMHM H DH RYPDF  IS  G+++ AL
Sbjct: 1   MTIEVLVLGAGQEVGKSCVIVKINGKRIMFDCGMHMRHTDHSRYPDFKKISDSGNFNDAL 60

Query: 60  SCIIITHFHLDHVGALAYFTEVCGYRGPIYMTYPTKALAPLMLEDYRKVMVDRRGEEELF 119
            CIIITHFHLDHVGALAYFTEVCGY GP+YMTYPTKAL+PLMLEDYRKVMVDRRGEEE F
Sbjct: 61  DCIIITHFHLDHVGALAYFTEVCGYSGPVYMTYPTKALSPLMLEDYRKVMVDRRGEEEQF 120

Query: 120 TSENIAECMKKVIAIDLRQTVQVDEDLQIRAYYAGHVIGAAMFYAKVGDAEMVYTGDYNM 179
           TS++IAECMKKVIA+DL+QTVQVDEDLQIRAYYAGHVIGAAMFY KVGDAEMVYTGDYNM
Sbjct: 121 TSDHIAECMKKVIAVDLKQTVQVDEDLQIRAYYAGHVIGAAMFYVKVGDAEMVYTGDYNM 180

Query: 180 TADRHLGAAQIDRLRLDLLITESTYATTIRDSKYAREREFLKAVHKCVSGGGKVLIPTFA 239
           T DRHLGAAQIDRLRLDLLITESTYATTIRDSKYAREREFLKAVHKCVSGGGKVLIPTFA
Sbjct: 181 TPDRHLGAAQIDRLRLDLLITESTYATTIRDSKYAREREFLKAVHKCVSGGGKVLIPTFA 240

Query: 240 LGRAQELCILLDDYWERMNLKVPIYFSAGLTIQANMYYKMLISWTSQKIKDTYSTHNAFD 299
           LGRAQEL ILLDDYWERMNLKVPIYFS+GLTIQAN Y+KMLI WTSQKIKDTYSTHNAFD
Sbjct: 241 LGRAQELRILLDDYWERMNLKVPIYFSSGLTIQANTYHKMLIGWTSQKIKDTYSTHNAFD 300

Query: 300 FKNVHHFERSMINAPGPCVLFATPGMISGGFSLEVFKHWAPSENNLITLPGYCVAGTVGH 359
           FKNVH FERSM++APGPCVLFATPGM+ GGFSLEVFKHWAPSE NL+ LPGYC+AGTVGH
Sbjct: 301 FKNVHKFERSMLDAPGPCVLFATPGMLIGGFSLEVFKHWAPSEKNLVALPGYCMAGTVGH 360

Query: 360 RLMSGKATKVDVDPDTQIDVRCQIHQLAFSPHT 392
           RL SGK TKVD DPDTQIDVRCQIHQLAFS HT
Sbjct: 361 RLTSGKPTKVDTDPDTQIDVRCQIHQLAFSAHT 393


>Medtr1g032500.2 | cleavage and polyadenylation specificity factor,
           putative | HC | chr1:11561666-11551365 | 20130731
          Length = 415

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/389 (87%), Positives = 362/389 (93%), Gaps = 1/389 (0%)

Query: 1   MAIETLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGHLDHRRYPDFSLIS-QGHYDAAL 59
           M IE LVLGAGQEVGKSCV+V INGKRIMFDCGMHM H DH RYPDF  IS  G+++ AL
Sbjct: 1   MTIEVLVLGAGQEVGKSCVIVKINGKRIMFDCGMHMRHTDHSRYPDFKKISDSGNFNDAL 60

Query: 60  SCIIITHFHLDHVGALAYFTEVCGYRGPIYMTYPTKALAPLMLEDYRKVMVDRRGEEELF 119
            CIIITHFHLDHVGALAYFTEVCGY GP+YMTYPTKAL+PLMLEDYRKVMVDRRGEEE F
Sbjct: 61  DCIIITHFHLDHVGALAYFTEVCGYSGPVYMTYPTKALSPLMLEDYRKVMVDRRGEEEQF 120

Query: 120 TSENIAECMKKVIAIDLRQTVQVDEDLQIRAYYAGHVIGAAMFYAKVGDAEMVYTGDYNM 179
           TS++IAECMKKVIA+DL+QTVQVDEDLQIRAYYAGHVIGAAMFY KVGDAEMVYTGDYNM
Sbjct: 121 TSDHIAECMKKVIAVDLKQTVQVDEDLQIRAYYAGHVIGAAMFYVKVGDAEMVYTGDYNM 180

Query: 180 TADRHLGAAQIDRLRLDLLITESTYATTIRDSKYAREREFLKAVHKCVSGGGKVLIPTFA 239
           T DRHLGAAQIDRLRLDLLITESTYATTIRDSKYAREREFLKAVHKCVSGGGKVLIPTFA
Sbjct: 181 TPDRHLGAAQIDRLRLDLLITESTYATTIRDSKYAREREFLKAVHKCVSGGGKVLIPTFA 240

Query: 240 LGRAQELCILLDDYWERMNLKVPIYFSAGLTIQANMYYKMLISWTSQKIKDTYSTHNAFD 299
           LGRAQEL ILLDDYWERMNLKVPIYFS+GLTIQAN Y+KMLI WTSQKIKDTYSTHNAFD
Sbjct: 241 LGRAQELRILLDDYWERMNLKVPIYFSSGLTIQANTYHKMLIGWTSQKIKDTYSTHNAFD 300

Query: 300 FKNVHHFERSMINAPGPCVLFATPGMISGGFSLEVFKHWAPSENNLITLPGYCVAGTVGH 359
           FKNVH FERSM++APGPCVLFATPGM+ GGFSLEVFKHWAPSE NL+ LPGYC+AGTVGH
Sbjct: 301 FKNVHKFERSMLDAPGPCVLFATPGMLIGGFSLEVFKHWAPSEKNLVALPGYCMAGTVGH 360

Query: 360 RLMSGKATKVDVDPDTQIDVRCQIHQLAF 388
           RL SGK TKVD DPDTQIDVRCQ+H +++
Sbjct: 361 RLTSGKPTKVDTDPDTQIDVRCQVHFISY 389


>Medtr2g006180.1 | cleavage and polyadenylation specificity factor |
           HC | chr2:489334-485307 | 20130731
          Length = 690

 Score =  263 bits (672), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 219/392 (55%), Gaps = 22/392 (5%)

Query: 8   LGAGQEVGKSCVVVTINGKRIMFDCGMHMGHLDHRRYPDFSLISQGHYDAALSCIIITHF 67
           LGAG EVG+SCV +T  GK ++FDCG+H G+      P F  I     D     ++ITHF
Sbjct: 27  LGAGNEVGRSCVYMTYKGKTVLFDCGIHPGYSGMAALPYFDEIDPSTVD----VLLITHF 82

Query: 68  HLDHVGALAYFTEVCGYRGPIYMTYPTKALAPLMLEDY---RKVMVDRRGEEELFTSENI 124
           HLDH  +L YF E   ++G ++MTY TKA+  L+L DY    KV VD    + L+  ++I
Sbjct: 83  HLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLSDYVKVSKVSVD----DMLYDEQDI 138

Query: 125 AECMKKVIAIDLRQTVQVDEDLQIRAYYAGHVIGAAMFYAKVGDAEMVYTGDYNMTADRH 184
              M K+  ID  QTV+V+  ++   Y AGHV+GAAMF   +    ++YTGDY+   DRH
Sbjct: 139 NRSMDKIEVIDFHQTVEVN-GIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 197

Query: 185 LGAAQIDRLRLDLLITESTYATTIRDSKYAREREFLKAVHKCVSGGGKVLIPTFALGRAQ 244
           L AA+  +   D+ I ESTY       ++ RE+ F   +H  +S GG+VLIP +ALGRAQ
Sbjct: 198 LRAAETPQFSPDVCIIESTYGVQHHQPRHTREKRFTDVIHSTISQGGRVLIPAYALGRAQ 257

Query: 245 ELCILLDDYW----ERMNLKVPIYFSAGLTIQANMYYKMLISWTSQKIKDTYSTHNAFDF 300
           EL ++LD+YW    E  N  +PIY+++ L  +    Y+      + +I++  S  N F F
Sbjct: 258 ELLLILDEYWANHPELQN--IPIYYASPLAKKCLTVYETYTLSMNDRIQNAKS--NPFAF 313

Query: 301 KNVHHFER-SMINAPGPCVLFATPGMISGGFSLEVFKHWAPSENNLITLPGYCVAGTVGH 359
           K++       +    GP V+ A+PG +  G S ++F  W   + N   +PGY V GT+  
Sbjct: 314 KHISALSSIDIFKDVGPSVVMASPGGLQSGLSRQLFDMWCSDKKNSCVIPGYVVEGTLAK 373

Query: 360 RLMSGKATKVDVDPDTQIDVRCQIHQLAFSPH 391
            +++ +  +V +       +  Q+H ++FS H
Sbjct: 374 TILN-EPKEVTLMNGLSAPLHMQVHYISFSAH 404


>Medtr1g050492.1 | cleavage and polyadenylation specificity factor
           subunit 2 | HC | chr1:19478035-19486897 | 20130731
          Length = 740

 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/367 (27%), Positives = 168/367 (45%), Gaps = 25/367 (6%)

Query: 20  VVTINGKRIMFDCGMHMGHLDHRRYPDFSLISQGHYDAALSCIIITHFHLDHVGALAYFT 79
           +V+I+   I+ DCG +  H D       S ++     + +  ++++H    H+ AL Y  
Sbjct: 22  LVSIDSFNILIDCGWN-DHFDPSLLQPLSRVA-----STIDAVLLSHPDTLHLAALPYAI 75

Query: 80  EVCGYRGPIYMTYPTKALAPLMLEDY---RKVMVDRRGEEELFTSENIAECMKKVIAIDL 136
           +  G   P+Y T P   L  L + D+   RK + D     +LFT ++I    + V  +  
Sbjct: 76  KHLGLSAPVYSTEPVYRLGLLTMYDHFLSRKQVSDF----DLFTLDDIDSAFQTVTRLTY 131

Query: 137 RQTVQVD---EDLQIRAYYAGHVIGAAMFYAKVGDAEMVYTGDYNMTADRHLGAAQIDR- 192
            Q   +    E + I  + AGH++G  ++       +++Y  D+N   +RHL    +   
Sbjct: 132 SQNHHLSGKGEGIVIAPHTAGHLLGGTIWKITKDGEDVIYAVDFNHRKERHLNGTVLGSF 191

Query: 193 LRLDLLITESTYATTIRDSKYAREREFLKAVHKCVSGGGKVLIPTFALGRAQELCILLDD 252
           +R  +LIT++  A   +  +  +++EF   + K +  GG VL+P    GR  EL ++L+ 
Sbjct: 192 VRPAVLITDAYNALNNQPYRRQKDKEFGDILKKTLRAGGNVLLPVDTAGRILELILMLES 251

Query: 253 YWERMNLKVPIYFSAGLTIQANMYYKMLISWTSQKIKDTY--STHNAFDFKNVHHF--ER 308
           YW   NL  PIYF   +      Y K  + W S  I  ++  +  N F  KN+     + 
Sbjct: 252 YWADENLNYPIYFLTYVASSTIDYVKSFLEWMSDSIAKSFEQTRENIFLLKNITLLVSKA 311

Query: 309 SMINAP-GPCVLFATPGMISGGFSLEVFKHWAPSENNLITLPGYCVAGTVGHRLMSG--- 364
            + NAP GP V+ A+   +  GFS ++F  W     NL+        GT+   L +    
Sbjct: 312 DLDNAPDGPKVVLASMASLEAGFSHDIFVEWGNDVKNLVLFTERGQFGTLARMLQADPPP 371

Query: 365 KATKVDV 371
           KA KV V
Sbjct: 372 KAVKVTV 378