Miyakogusa Predicted Gene

Lj2g3v3086560.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3086560.1 Non Characterized Hit- tr|D7LZ23|D7LZ23_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,46.55,5e-16,PRONE,Plant specific Rop nucleotide exchanger,
PRONE,NODE_83427_length_1225_cov_15.594286.path3.1
         (143 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g081410.1 | RHO guanyl-nucleotide exchange factor | HC | c...   195   1e-50
Medtr3g069590.1 | RHO guanyl-nucleotide exchange factor | HC | c...   163   4e-41
Medtr7g065220.1 | RHO guanyl-nucleotide exchange factor | HC | c...    75   2e-14
Medtr4g019770.1 | RHO guanyl-nucleotide exchange factor | HC | c...    47   8e-06

>Medtr5g081410.1 | RHO guanyl-nucleotide exchange factor | HC |
           chr5:34865519-34861053 | 20130731
          Length = 576

 Score =  195 bits (495), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 101/150 (67%), Positives = 120/150 (80%), Gaps = 10/150 (6%)

Query: 1   MAFNIVARIDDLLYVDDLTKHSDRFPLVPPTVNVVSQQKLSRSMAVSVSGTPHKA----- 55
           MAFNIVARIDDLLYVDDLTKHSDRFPL P  VN+VSQ+K+S+ + VSVS T HKA     
Sbjct: 430 MAFNIVARIDDLLYVDDLTKHSDRFPLAP-MVNMVSQKKVSQQLPVSVSDTQHKAKFGTP 488

Query: 56  -LSPVPLISPARGDRERTPFLNINNNNIIKPQRRGFGVRRALSNYLGGETKATKMFSNAT 114
             SPVPLISP++G  E TPF++ NN+NIIKPQRRGFGV+R LSNYLGGE KA K+FSN++
Sbjct: 489 SYSPVPLISPSKG--EITPFIHNNNSNIIKPQRRGFGVKRVLSNYLGGEMKAAKIFSNSS 546

Query: 115 -EVYGTNPNCNKAEQPECQKESHDMRSKTK 143
            EV  +NP+C + EQ EC+ ES  M+SKTK
Sbjct: 547 HEVNSSNPSCKRTEQLECKNESCSMKSKTK 576


>Medtr3g069590.1 | RHO guanyl-nucleotide exchange factor | HC |
           chr3:31131780-31127698 | 20130731
          Length = 595

 Score =  163 bits (413), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 99/148 (66%), Positives = 111/148 (75%), Gaps = 19/148 (12%)

Query: 1   MAFNIVARIDDLLYVDDLTKHSDRFPLVPPTVNVVSQQKLSRSMAVSVSGTPHKA----- 55
           MA+NI++RIDDLLYVD+LTKHSDRF LVP T N+VSQQ L R  +VSVSGTPHKA     
Sbjct: 448 MAYNIISRIDDLLYVDELTKHSDRFALVPTTGNMVSQQIL-RPFSVSVSGTPHKAAFGTP 506

Query: 56  -LSP-VPLISPARGDRERTPFLN------INNNNIIKPQRRGFGVRRALSNYLGGETKAT 107
             SP VPLISP RG  ERTPFL+      +NN N IKPQRRGFGVRRALSNYLG ETK T
Sbjct: 507 KFSPSVPLISPVRG--ERTPFLHNNNNNNVNNVNNIKPQRRGFGVRRALSNYLGVETK-T 563

Query: 108 KMFSNATEVYGTNPNCNKAEQPECQKES 135
           K  +N TEV G+NP+  K EQP  QKE+
Sbjct: 564 KTCANTTEVNGSNPSSKKTEQP--QKET 589


>Medtr7g065220.1 | RHO guanyl-nucleotide exchange factor | HC |
           chr7:23784213-23780879 | 20130731
          Length = 656

 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 72/113 (63%), Gaps = 13/113 (11%)

Query: 1   MAFNIVARIDDLLYVDDLTKHSDRFPLVPPTVNVVSQQKLSRSMAVSVSGTPHKAL---- 56
           +AFN+V+RIDD+LYVDDLTK+SD+F      V V++++ +S   +V V  TP+K+     
Sbjct: 533 LAFNMVSRIDDVLYVDDLTKNSDQFS-SHSKVGVITRKSISVPYSVPVPTTPYKSAFGTP 591

Query: 57  --SPVPLISPARGDRERTPFLNINNNNIIKPQRRGFGVRRALSNYLGGETKAT 107
             SP   ISP++G   ++P LN  N    K  +RG GV+++L+++L  + K +
Sbjct: 592 TRSPAHAISPSKGG--KSPLLNNGN----KTPQRGVGVKKSLTDFLSIDAKGS 638


>Medtr4g019770.1 | RHO guanyl-nucleotide exchange factor | HC |
           chr4:6266234-6262535 | 20130731
          Length = 542

 Score = 46.6 bits (109), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/41 (56%), Positives = 32/41 (78%), Gaps = 1/41 (2%)

Query: 1   MAFNIVARIDDLLYVDDLTKHSDRFPLVPPTVNVVSQQKLS 41
           +A NIVARIDD+LYVD+LTKHSD+F  +   V V++ + +S
Sbjct: 440 LASNIVARIDDVLYVDNLTKHSDKFSSL-SKVGVITTKSIS 479