Miyakogusa Predicted Gene

Lj2g3v3086510.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3086510.1 Non Characterized Hit- tr|I1JIV7|I1JIV7_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.7260
PE=,59.79,2e-18,F-box,F-box domain,
cyclin-like,NODE_47195_length_1382_cov_32.022430.path2.1
         (100 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g436860.2 | F-box plant-like protein | HC | chr3:12403405-...    87   3e-18
Medtr3g436860.3 | F-box plant-like protein | HC | chr3:12402988-...    87   3e-18
Medtr5g089110.1 | F-box plant-like protein | HC | chr5:38730456-...    87   4e-18
Medtr5g089110.2 | F-box plant-like protein | HC | chr5:38730456-...    86   5e-18
Medtr3g436860.1 | F-box plant-like protein | HC | chr3:12403625-...    77   4e-15

>Medtr3g436860.2 | F-box plant-like protein | HC |
           chr3:12403405-12408412 | 20130731
          Length = 378

 Score = 87.0 bits (214), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 57/80 (71%), Gaps = 8/80 (10%)

Query: 16  KSFRNCLWLSFLYQIPTKMSLAKKTLTSKFENVEDTREML--------VLECILERLPQS 67
           K F+N  W+  L +I T+MS+ +K+L+S+ ENVE+  + L        +LECILE+LP S
Sbjct: 48  KLFKNHFWIGLLCEIHTRMSMVRKSLSSRVENVEEIEDKLSLLDLPELILECILEKLPPS 107

Query: 68  SLCQMASVCHSLRERCVSTF 87
           SLCQMA +CHSLRERCVS +
Sbjct: 108 SLCQMAGICHSLRERCVSDY 127


>Medtr3g436860.3 | F-box plant-like protein | HC |
           chr3:12402988-12406347 | 20130731
          Length = 378

 Score = 87.0 bits (214), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 57/80 (71%), Gaps = 8/80 (10%)

Query: 16  KSFRNCLWLSFLYQIPTKMSLAKKTLTSKFENVEDTREML--------VLECILERLPQS 67
           K F+N  W+  L +I T+MS+ +K+L+S+ ENVE+  + L        +LECILE+LP S
Sbjct: 48  KLFKNHFWIGLLCEIHTRMSMVRKSLSSRVENVEEIEDKLSLLDLPELILECILEKLPPS 107

Query: 68  SLCQMASVCHSLRERCVSTF 87
           SLCQMA +CHSLRERCVS +
Sbjct: 108 SLCQMAGICHSLRERCVSDY 127


>Medtr5g089110.1 | F-box plant-like protein | HC |
           chr5:38730456-38725757 | 20130731
          Length = 399

 Score = 86.7 bits (213), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/98 (55%), Positives = 64/98 (65%), Gaps = 17/98 (17%)

Query: 1   MRLISLLFYKELLCVKSFRNCLWLSFLYQIPTKMSLAKKTLTSKFENVEDTREML----- 55
           +RLISLLF+K+  C+KSF       F   + ++MSL KKTL SK ENVE+  + L     
Sbjct: 31  VRLISLLFHKDF-CLKSFCKL----FRKTLVSRMSLVKKTLVSKVENVEEEVDSLQQNLS 85

Query: 56  -------VLECILERLPQSSLCQMASVCHSLRERCVST 86
                  VLECILE+LP SSLCQMA VCHSLRERCVS 
Sbjct: 86  VLDLPELVLECILEKLPPSSLCQMAGVCHSLRERCVSD 123


>Medtr5g089110.2 | F-box plant-like protein | HC |
           chr5:38730456-38725757 | 20130731
          Length = 347

 Score = 86.3 bits (212), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/98 (55%), Positives = 64/98 (65%), Gaps = 17/98 (17%)

Query: 1   MRLISLLFYKELLCVKSFRNCLWLSFLYQIPTKMSLAKKTLTSKFENVEDTREML----- 55
           +RLISLLF+K+  C+KSF       F   + ++MSL KKTL SK ENVE+  + L     
Sbjct: 31  VRLISLLFHKDF-CLKSFCKL----FRKTLVSRMSLVKKTLVSKVENVEEEVDSLQQNLS 85

Query: 56  -------VLECILERLPQSSLCQMASVCHSLRERCVST 86
                  VLECILE+LP SSLCQMA VCHSLRERCVS 
Sbjct: 86  VLDLPELVLECILEKLPPSSLCQMAGVCHSLRERCVSD 123


>Medtr3g436860.1 | F-box plant-like protein | HC |
          chr3:12403625-12408078 | 20130731
          Length = 335

 Score = 77.0 bits (188), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/62 (56%), Positives = 46/62 (74%), Gaps = 8/62 (12%)

Query: 34 MSLAKKTLTSKFENVEDTREML--------VLECILERLPQSSLCQMASVCHSLRERCVS 85
          MS+ +K+L+S+ ENVE+  + L        +LECILE+LP SSLCQMA +CHSLRERCVS
Sbjct: 1  MSMVRKSLSSRVENVEEIEDKLSLLDLPELILECILEKLPPSSLCQMAGICHSLRERCVS 60

Query: 86 TF 87
           +
Sbjct: 61 DY 62