Miyakogusa Predicted Gene

Lj2g3v3086500.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3086500.1 Non Characterized Hit- tr|K4CGF7|K4CGF7_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,54.9,6e-19,seg,NULL,gene.g44170.t1.1
         (119 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g091190.1 | transmembrane protein, putative | HC | chr5:39...    83   5e-17
Medtr7g035145.1 | hypothetical protein | LC | chr7:13325416-1332...    54   3e-08

>Medtr5g091190.1 | transmembrane protein, putative | HC |
           chr5:39740774-39739208 | 20130731
          Length = 178

 Score = 83.2 bits (204), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/118 (44%), Positives = 63/118 (53%), Gaps = 5/118 (4%)

Query: 1   MSKNFMAIILSFALFTPNPSFLTRKNNNLINFYHTGTTSSIRTCAQSQGTDXXXXXXXXX 60
           M ++ MA I S     P+PSFLTRK NN I F+H   +S  +TCAQSQGT+         
Sbjct: 1   MKQSSMATITSS--LHPSPSFLTRKYNN-IKFHHA--SSLTKTCAQSQGTEPGVSEDASS 55

Query: 61  XXXXXXXXXXXXXXXXXXXXXXPNNGYDSDGSSSKPTIREQLSQLFGGRDDDFSIPLG 118
                                    GY+SDGSS + TIREQL+QL G RDDDFS+PLG
Sbjct: 56  IGSLSSSRAQLDLLEQFTSTSSSVIGYESDGSSQRLTIREQLAQLVGERDDDFSLPLG 113


>Medtr7g035145.1 | hypothetical protein | LC |
           chr7:13325416-13325782 | 20130731
          Length = 86

 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/33 (69%), Positives = 27/33 (81%)

Query: 86  GYDSDGSSSKPTIREQLSQLFGGRDDDFSIPLG 118
           GY+SDGSS +  IREQL QL G RDDDFS+P+G
Sbjct: 15  GYESDGSSQRLRIREQLEQLVGERDDDFSLPIG 47