Miyakogusa Predicted Gene
- Lj2g3v3085360.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v3085360.2 tr|G7KD27|G7KD27_MEDTR Ribosomal RNA small
subunit methyltransferase B OS=Medicago truncatula
GN=MTR,81.52,0,NOL1_NOP2_SUN,Bacterial Fmu (Sun)/eukaryotic nucleolar
NOL1/Nop2p, conserved site; PUA,Pseudouridine,CUFF.39691.2
(610 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g091110.1 | NOL1/NOP2/sun family protein | HC | chr5:39705... 962 0.0
Medtr3g460700.1 | NOL1/NOP2/sun family RNA methylase, putative |... 66 1e-10
Medtr5g096020.1 | ribosomal RNA small subunit methyltransferase ... 64 3e-10
Medtr3g104760.1 | NOL1/NOP2/sun family RNA methylase, putative |... 58 2e-08
>Medtr5g091110.1 | NOL1/NOP2/sun family protein | HC |
chr5:39705460-39695039 | 20130731
Length = 606
Score = 962 bits (2487), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/620 (78%), Positives = 526/620 (84%), Gaps = 24/620 (3%)
Query: 1 MKKGRDLLIATSRRTRTLPQPPSS-------PFQEAMQXXXXXXXXXXXXDRYSFNPTLQ 53
MKKGRDL T+ RTL + P+S F E MQ RYSFNPTL
Sbjct: 1 MKKGRDLFFFTT--CRTLHKTPNSSNSITATAFHETMQSSDHNSSHS---QRYSFNPTLN 55
Query: 54 WNPQLHHYFLKAYGSHRFSLISAALTRPSRYSCIRVNSLRSTTDAVIEKLRSLVNQQ-PP 112
WNPQLH+YF+ AYGS FS IS+ALTRPSRYSCIRVN+L ST+DAVIEKLRS V ++
Sbjct: 56 WNPQLHNYFINAYGSDHFSRISSALTRPSRYSCIRVNTLCSTSDAVIEKLRSTVKEKLNG 115
Query: 113 SNAED--EVVNPLKDCDGSAAAPFSKCRIPGLDYVVFVWGSGPHRIDYGRDADAPPKEVI 170
S+ ED + VNPLK+ S ++ KC+IPGLDYVVFVWGSGPH +DYG + PKEVI
Sbjct: 116 SDCEDVDDAVNPLKEDLDSDSSLLFKCKIPGLDYVVFVWGSGPHHVDYG---NVAPKEVI 172
Query: 171 VSRKCAEAVLRGAQVYVPGIVACSAHVEEGDTVAVSVAVEQQGSSGGWSAGMTRGTVLQG 230
VSRKCAEAVLRGAQVYVPGI+ACSAHVE+GDTVAVSVA+EQQGS GGWS+GMTRG VLQG
Sbjct: 173 VSRKCAEAVLRGAQVYVPGIMACSAHVEKGDTVAVSVAIEQQGSDGGWSSGMTRGIVLQG 232
Query: 231 SQTDPYYTERSGLYIGQGVAMLSRAGMFRVPQGVGVDMKDRVYDLPSFHSVLEGDIFLQN 290
S+TDPYY ER+GLYIGQG AMLSRAGMFRV +G+GVDMKDRVY+L SFH+VLEG+IFLQN
Sbjct: 233 SETDPYYLERNGLYIGQGTAMLSRAGMFRVTEGLGVDMKDRVYELHSFHNVLEGEIFLQN 292
Query: 291 LPSIIAAHALDPQMGERILDMCAAPGGKTTAIAILMKDKGEVIATDRSHNKVLDIQKLAA 350
LPSIIAAHALDPQMGERILDMCAAPGGKTTAIAILMKDKGEVIATDRSHNKVLDI+KLAA
Sbjct: 293 LPSIIAAHALDPQMGERILDMCAAPGGKTTAIAILMKDKGEVIATDRSHNKVLDIEKLAA 352
Query: 351 ELGLSCIKAFRLDAVKSVCQRNDIDTLTDPCCNNANNGVASQEFSSPHLQVERMQPLVTE 410
ELGLSCIKAF+LDA+KSV QRNDIDT C NNA N V +Q S +LQVERM PLVTE
Sbjct: 353 ELGLSCIKAFKLDALKSVSQRNDIDT----CHNNATNDVKNQ--VSSNLQVERMSPLVTE 406
Query: 411 SLKTETQEENDNGEKANGRAYQSKADIRKNMRRARNGPGRNQSVGGQVDSSKGFSPGSFD 470
S KTET EEN GEKA AY SKA+IRK+MRRARNGPGRNQS GG+VD SKGF P SFD
Sbjct: 407 SFKTETLEENGKGEKAREGAYPSKAEIRKSMRRARNGPGRNQSGGGRVDISKGFEPDSFD 466
Query: 471 RVLLDAPCSALGLRPRLFAGEETIESLRSHAKYQRKMFDQAVQLARPGGVIVYSTCTINP 530
RVLLDAPCSALGLRPRLFAGE+TIESLRSHAKYQR+MFDQAVQL RPGGVIVYSTCTINP
Sbjct: 467 RVLLDAPCSALGLRPRLFAGEDTIESLRSHAKYQRRMFDQAVQLVRPGGVIVYSTCTINP 526
Query: 531 GENEALVRYALDKYKYLSLAPQHPRIGGPGLVGSFEFPDGYVDEWLRPGEEDLVQRFDPS 590
GENEALVRYALDKYKYLSLAPQHP+IGGPGLVGS EFPDGY +EWLRPGEEDLVQRFDPS
Sbjct: 527 GENEALVRYALDKYKYLSLAPQHPKIGGPGLVGSCEFPDGYAEEWLRPGEEDLVQRFDPS 586
Query: 591 SPLDTIGFFIAKFAVGSKDT 610
SPLDTIGFFIAKFAVGSKDT
Sbjct: 587 SPLDTIGFFIAKFAVGSKDT 606
>Medtr3g460700.1 | NOL1/NOP2/sun family RNA methylase, putative | HC
| chr3:23817126-23809675 | 20130731
Length = 657
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 77/155 (49%), Gaps = 18/155 (11%)
Query: 455 GGQVDSSKGFSPGSFDRVLLDAPCSALGL--RPRLFAGEETIESLRSHAKYQRKMFDQAV 512
G ++ GF+ S DRVLLDAPCS G+ + + +E ++ A Q+++ A+
Sbjct: 371 GKELPKVLGFN--SVDRVLLDAPCSGTGVISKDESVKTSKNLEDIKKCAHLQKELLLAAI 428
Query: 513 QL----ARPGGVIVYSTCTINPGENEALVRYALDKYKYLSLAPQHPRIGGPGLVGSFEFP 568
+ ++ GG +VYSTC+I ENEA++ Y L K + + L P G PG
Sbjct: 429 DMVDSYSKSGGYVVYSTCSIMVAENEAVIDYVL-KRRDVKLVPCGLDFGRPGFT------ 481
Query: 569 DGYVDEWLRPGEEDLVQRFDPSSPLDTIGFFIAKF 603
+ ++ P D +RF P + GFF+AK
Sbjct: 482 -KFREQRFHPS-LDKTRRFYPHV-HNMDGFFVAKL 513
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 282 LEGDIFLQNLPSIIAAHALDPQMGERILDMCAAPGGKTTAIAILMKDKGEVIATDRSHNK 341
+ G LQ+ S + AL PQ ERI+DM AAPGGKTT IA LMK+ G + A + K
Sbjct: 289 MAGFYMLQSASSFLPVMALAPQEKERIVDMAAAPGGKTTYIAALMKNSGIIFANEM---K 345
Query: 342 VLDIQKLAAEL 352
V ++ L A L
Sbjct: 346 VPRLKSLTANL 356
>Medtr5g096020.1 | ribosomal RNA small subunit methyltransferase B |
HC | chr5:41982400-41975357 | 20130731
Length = 529
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 466 PGSFDRVLLDAPCSALGLRPRL--FAGEETIESLRSHAKYQRKMFDQAVQLARPGGVIVY 523
P ++VLLDAPCS LG+ + +E + K Q ++ D A L +PGGV+VY
Sbjct: 405 PLKSNKVLLDAPCSGLGVLSKRADLRWNRKLEDMEQLKKLQDELLDAASTLVKPGGVLVY 464
Query: 524 STCTINPGENEALVRYALDKYKYLSLAP 551
STC+I+P EN+ V L+++ + P
Sbjct: 465 STCSIDPEENDDRVAAFLERHADFHIDP 492
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 15/135 (11%)
Query: 251 MLSRAGMFRVPQGVGVDMKDRVYDLPSFHSVLEGDIFLQNLPSI------IAAHALDPQM 304
+++ +VP + + + D V ++ +F + L S+ + +DPQ
Sbjct: 277 LVTELNALKVPHKLSLHLDDFVRIKTGLQIIIHAGLFKEGLCSVQDESAGLIVSIVDPQP 336
Query: 305 GERILDMCAAPGGKTTAIAILMKDKGEVIATDRSHNKVLDIQKLAAELGLSCIKAFRLDA 364
GE I+D CAAPGGKT +A + +G V A D + ++ +++ A K ++D
Sbjct: 337 GETIVDCCAAPGGKTLYMAAHLSGQGMVYAVDVNSGRLRILKETA--------KLHQVDG 388
Query: 365 VKSVCQRNDIDTLTD 379
V + D+ TLTD
Sbjct: 389 VVTTVH-ADLRTLTD 402
>Medtr3g104760.1 | NOL1/NOP2/sun family RNA methylase, putative | HC
| chr3:48292253-48297828 | 20130731
Length = 509
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 39/69 (56%)
Query: 274 DLPSFHSVLEGDIFLQNLPSIIAAHALDPQMGERILDMCAAPGGKTTAIAILMKDKGEVI 333
DL V G IFLQ S + A AL P+ G +LD CAAPG KT +A LMK KG +I
Sbjct: 214 DLHDHPLVKNGSIFLQGKASSMVAPALSPEPGWEVLDACAAPGNKTVHLAALMKRKGRII 273
Query: 334 ATDRSHNKV 342
A + ++
Sbjct: 274 ACELKKERI 282