Miyakogusa Predicted Gene

Lj2g3v3085360.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3085360.1 Non Characterized Hit- tr|I1M6Z3|I1M6Z3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.6882
PE=,90.96,0,Nol1_Nop2_Fmu,Bacterial Fmu (Sun)/eukaryotic nucleolar
NOL1/Nop2p; NOL1_NOP2_SUN,Bacterial Fmu (Sun),CUFF.39691.1
         (192 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g091110.1 | NOL1/NOP2/sun family protein | HC | chr5:39705...   354   2e-98
Medtr3g460700.1 | NOL1/NOP2/sun family RNA methylase, putative |...    66   2e-11
Medtr5g096020.1 | ribosomal RNA small subunit methyltransferase ...    65   6e-11

>Medtr5g091110.1 | NOL1/NOP2/sun family protein | HC |
           chr5:39705460-39695039 | 20130731
          Length = 606

 Score =  354 bits (909), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 170/188 (90%), Positives = 177/188 (94%)

Query: 5   GEKANGRAYQSKADIRKNMRRARNGPGRNQSVGGQVDSSKGFSPGSFDRVLLDAPCSALG 64
           GEKA   AY SKA+IRK+MRRARNGPGRNQS GG+VD SKGF P SFDRVLLDAPCSALG
Sbjct: 419 GEKAREGAYPSKAEIRKSMRRARNGPGRNQSGGGRVDISKGFEPDSFDRVLLDAPCSALG 478

Query: 65  LRPRLFAGEETIESLRSHAKYQRKMFDQAVQLARPGGVIVYSTCTINPGENEALVRYALD 124
           LRPRLFAGE+TIESLRSHAKYQR+MFDQAVQL RPGGVIVYSTCTINPGENEALVRYALD
Sbjct: 479 LRPRLFAGEDTIESLRSHAKYQRRMFDQAVQLVRPGGVIVYSTCTINPGENEALVRYALD 538

Query: 125 KYKYLSLAPQHPRIGGPGLVGSFEFPDGYVDEWLRPGEEDLVQRFDPSSPLDTIGFFIAK 184
           KYKYLSLAPQHP+IGGPGLVGS EFPDGY +EWLRPGEEDLVQRFDPSSPLDTIGFFIAK
Sbjct: 539 KYKYLSLAPQHPKIGGPGLVGSCEFPDGYAEEWLRPGEEDLVQRFDPSSPLDTIGFFIAK 598

Query: 185 FAVGSKDT 192
           FAVGSKDT
Sbjct: 599 FAVGSKDT 606


>Medtr3g460700.1 | NOL1/NOP2/sun family RNA methylase, putative | HC
           | chr3:23817126-23809675 | 20130731
          Length = 657

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 76/155 (49%), Gaps = 18/155 (11%)

Query: 37  GGQVDSSKGFSPGSFDRVLLDAPCSALGL--RPRLFAGEETIESLRSHAKYQRKMFDQAV 94
           G ++    GF   S DRVLLDAPCS  G+  +       + +E ++  A  Q+++   A+
Sbjct: 371 GKELPKVLGF--NSVDRVLLDAPCSGTGVISKDESVKTSKNLEDIKKCAHLQKELLLAAI 428

Query: 95  QL----ARPGGVIVYSTCTINPGENEALVRYALDKYKYLSLAPQHPRIGGPGLVGSFEFP 150
            +    ++ GG +VYSTC+I   ENEA++ Y L K + + L P     G PG        
Sbjct: 429 DMVDSYSKSGGYVVYSTCSIMVAENEAVIDYVL-KRRDVKLVPCGLDFGRPGFT------ 481

Query: 151 DGYVDEWLRPGEEDLVQRFDPSSPLDTIGFFIAKF 185
             + ++   P   D  +RF P    +  GFF+AK 
Sbjct: 482 -KFREQRFHPS-LDKTRRFYPHVH-NMDGFFVAKL 513


>Medtr5g096020.1 | ribosomal RNA small subunit methyltransferase B |
           HC | chr5:41982400-41975357 | 20130731
          Length = 529

 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 2/117 (1%)

Query: 19  IRKNMRRARNGPGRNQSVGGQVDSSKGFSPGSFDRVLLDAPCSALGLRPRL--FAGEETI 76
           I K   +     G   +V   + +     P   ++VLLDAPCS LG+  +         +
Sbjct: 376 ILKETAKLHQVDGVVTTVHADLRTLTDGEPLKSNKVLLDAPCSGLGVLSKRADLRWNRKL 435

Query: 77  ESLRSHAKYQRKMFDQAVQLARPGGVIVYSTCTINPGENEALVRYALDKYKYLSLAP 133
           E +    K Q ++ D A  L +PGGV+VYSTC+I+P EN+  V   L+++    + P
Sbjct: 436 EDMEQLKKLQDELLDAASTLVKPGGVLVYSTCSIDPEENDDRVAAFLERHADFHIDP 492