Miyakogusa Predicted Gene

Lj2g3v3073970.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3073970.1 CUFF.39681.1
         (195 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g090740.1 | AAA domain protein | HC | chr5:39503827-395046...   190   6e-49

>Medtr5g090740.1 | AAA domain protein | HC | chr5:39503827-39504673
           | 20130731
          Length = 190

 Score =  190 bits (483), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 105/192 (54%), Positives = 126/192 (65%), Gaps = 5/192 (2%)

Query: 1   MEKLEVPVIIAMKGHPGSGKSTLAKSIATTLRIPLIDKDDVKDCXXXXXXXXXX-XXXXX 59
           MEK++V VIIAMKGHPG+GKSTLAKSIA++L+IPLIDKDD+KDC                
Sbjct: 1   MEKVKVGVIIAMKGHPGTGKSTLAKSIASSLKIPLIDKDDIKDCITTPLIQTTPPSLLNE 60

Query: 60  XXYDAIWQIAATQLRLGLSVILDSPLSRPAHLHRLRHLAADTGARIIIIECRPGDHAXXX 119
             Y AI+QIA+TQLR+GLS+I+DSPLSR +HL RLR LA + GAR++IIECRPGD     
Sbjct: 61  LSYSAIFQIASTQLRVGLSLIIDSPLSRRSHLDRLRSLAGEYGARVVIIECRPGDKG--L 118

Query: 120 XXXXXXXXXXXXXHKPATWEDLQKLLEGYGGCTEYDVGXXXXXXXXXXXXXXXXXEELCS 179
                        HKPATWE+L+K++EGYGGC EYDVG                 E+LCS
Sbjct: 119 WRRRVEERGGGGGHKPATWEELEKIVEGYGGCDEYDVG--GVPKLVMDTTEDVDLEKLCS 176

Query: 180 AALEFIFSCAAK 191
            ALEFI   A K
Sbjct: 177 HALEFIEDHAVK 188