Miyakogusa Predicted Gene

Lj2g3v3072930.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3072930.1 Non Characterized Hit- tr|I1M710|I1M710_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.10202
PE,85.77,0,LISH,LisH dimerisation motif; CTLH,CTLH, C-terminal LisH
motif; WD REPEAT PROTEIN 26-RELATED,NULL; C,CUFF.39697.1
         (262 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g090420.1 | transducin/WD40 repeat protein | HC | chr5:393...   388   e-108
Medtr3g449990.1 | transducin/WD40 repeat protein | HC | chr3:171...   332   2e-91
Medtr3g449950.1 | transducin family protein/WD-40 repeat protein...   265   5e-71
Medtr1g069345.1 | transducin/WD40 repeat protein | HC | chr1:299...   124   1e-28

>Medtr5g090420.1 | transducin/WD40 repeat protein | HC |
           chr5:39373338-39377755 | 20130731
          Length = 572

 Score =  388 bits (997), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/260 (74%), Positives = 213/260 (81%), Gaps = 1/260 (0%)

Query: 1   MGGVEDEEPALKRMXXXXXXXXXXXXXXXXXEPVGGFLSDSMARPLPSHGDEQVVGSKGV 60
           MGGV+DEEPALKRM                 EPVGGF SDSMAR LPS GD+QVVGSKGV
Sbjct: 1   MGGVDDEEPALKRMKLSAKGLVGLANGSSSKEPVGGFSSDSMARLLPSEGDDQVVGSKGV 60

Query: 61  IKRDEFVRIIAKALYSLGYRKSGAHLEEESGIPLHSPGVNMFIQQILDGNWDDSIATLHT 120
           IKRDEFVRIIAKALYSLGYRKSGA LEEESGIPLHSPGVN+F QQ+LDGNWD+S+ATL  
Sbjct: 61  IKRDEFVRIIAKALYSLGYRKSGARLEEESGIPLHSPGVNLFTQQVLDGNWDESVATLRK 120

Query: 121 VGLADESVVRSASFLILEQKFFELLHAEKVMEALKTLRTEISPLSVYSNRVRELSSCMVS 180
           +GL D+++VRSAS LILEQKFFELL+  KVMEALKTLR EI+PL   S+R+RELSSC+VS
Sbjct: 121 IGLTDDTIVRSASCLILEQKFFELLNGGKVMEALKTLREEITPLCRDSSRIRELSSCLVS 180

Query: 181 PSPKQDILKVRSRSXXXXXXXXXXXXTVMIPEKRLEHLVEQALILQREACPFHNSLDKEM 240
           PSPKQDI+KVRSRS            TVMIPEKRLEHLVEQAL LQREACPFHNSLD +M
Sbjct: 181 PSPKQDIVKVRSRSKLLEELQKLLPPTVMIPEKRLEHLVEQALTLQREACPFHNSLD-QM 239

Query: 241 SLYSDHHCGKDQIPSKTLQV 260
           SLYSDHHCGKD IPS+T+Q+
Sbjct: 240 SLYSDHHCGKDLIPSRTVQI 259


>Medtr3g449990.1 | transducin/WD40 repeat protein | HC |
           chr3:17129213-17120938 | 20130731
          Length = 581

 Score =  332 bits (851), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 166/265 (62%), Positives = 201/265 (75%), Gaps = 5/265 (1%)

Query: 1   MGGVEDEEPALKRMXXXXXXXXXXXXXXXXXEPVGGFLSDSMARPLPSHGDEQVVGSKGV 60
           MGGVEDEEPALKR                  E V G  S+ MARPL S GD +VVGSKG+
Sbjct: 1   MGGVEDEEPALKRTKLLSKGLNSLSNGSSSVERVVGSSSELMARPLSSEGDNEVVGSKGI 60

Query: 61  IKRDEFVRIIAKALYSLGYRKSGAHLEEESGIPLHSPGVNMFIQQILDGNWDDSIATLHT 120
           IK+ EFVRII KALYSLGY+K+G +LEEESGIPL+S  VN+F+QQ+LDG+W++S++TL+ 
Sbjct: 61  IKKGEFVRIITKALYSLGYKKTGENLEEESGIPLNSSVVNVFMQQVLDGDWEESVSTLNK 120

Query: 121 VGLADESVVRSASFLILEQKFFELLHAEKVMEALKTLRTEISPLSVYSNRVRELSSCMVS 180
           +GL DE +VR+ASFLILEQKFFELL  +KVM+ALKTLRTEI+ L V S R+RELSSC++S
Sbjct: 121 IGLEDERIVRAASFLILEQKFFELLDGDKVMDALKTLRTEITELCVDSARIRELSSCLLS 180

Query: 181 PSPK-----QDILKVRSRSXXXXXXXXXXXXTVMIPEKRLEHLVEQALILQREACPFHNS 235
           PS +     +D ++ ++R             TVMIPE RLEHLVEQALILQR+AC FHNS
Sbjct: 181 PSDQCGSSGRDFIRAKTRLKLLEELQKLIPPTVMIPENRLEHLVEQALILQRDACSFHNS 240

Query: 236 LDKEMSLYSDHHCGKDQIPSKTLQV 260
           LDKEMSLYSDHHCGK QIPS+TLQ+
Sbjct: 241 LDKEMSLYSDHHCGKTQIPSRTLQI 265


>Medtr3g449950.1 | transducin family protein/WD-40 repeat protein |
           HC | chr3:17110234-17112881 | 20130731
          Length = 311

 Score =  265 bits (676), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 141/261 (54%), Positives = 177/261 (67%), Gaps = 13/261 (4%)

Query: 1   MGGVEDEEPALKRMXXXXXXXXXXXXXXXXXEPVGGFLSDSMARPLPSHGDEQVVGSKGV 60
           MGGVEDEEPA KR                  E V G  SD MA PL + GD++VVG+KG 
Sbjct: 1   MGGVEDEEPATKR-------TKLSPNSSSSMEHVVGSTSDLMAPPLSAEGDDEVVGTKGS 53

Query: 61  IKRDEFVRIIAKALYSLGYRKSGAHLEEESGIPLHSPGVNMFIQQILDGNWDDSIATLHT 120
           +KR EFVR+I KA+YSLGY+KSG HLEEESGIPL+S  VN+F+QQ+LDG+WD+S+ATL  
Sbjct: 54  LKRREFVRMITKAMYSLGYKKSGEHLEEESGIPLNSSAVNLFMQQVLDGDWDESLATLKQ 113

Query: 121 VGLADESVVRSASFLILEQKFFELLHAEKVMEALKTLRTEISPLSVYSNRVRELSSCMV- 179
           +GL DES+V++AS LILEQKFFEL+  +KV+EAL TLR +I+ L V S R+RELSSC + 
Sbjct: 114 IGLEDESIVKAASLLILEQKFFELIDGDKVIEALNTLRNQITQLCVDSTRIRELSSCFLS 173

Query: 180 ----SPSPKQDILKVRSRSXXXXXXXXXXXXTVMIPEKRLEHLVEQALILQREACPFHNS 235
                 S  +D ++ ++R             TVMIPEKRLEHLVEQAL ++R A    N 
Sbjct: 174 PSGQGGSSGRDFVRAKTRLKLLEELQKLFPSTVMIPEKRLEHLVEQALTMERVASLCRNV 233

Query: 236 LDKEMSLYSDHHCGKDQIPSK 256
           LDK+MS  SD   G+ QIP+ 
Sbjct: 234 LDKKMSSCSDDF-GQSQIPTN 253


>Medtr1g069345.1 | transducin/WD40 repeat protein | HC |
           chr1:29955415-29960832 | 20130731
          Length = 507

 Score =  124 bits (310), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 114/208 (54%), Gaps = 3/208 (1%)

Query: 53  QVVGSKGVIKRDEFVRIIAKALYSLGYRKSGAHLEEESGIPLHSPGVNMFIQQILDGNWD 112
           + +GSKG+I + EF+RII ++LYSLGY K+ + LE ESG+   S    +    +L+GNW+
Sbjct: 7   ETLGSKGLINKHEFIRIILQSLYSLGYTKTASLLESESGVSYKSNEFQLLESHVLNGNWE 66

Query: 113 DSIATLHTVGLADESVVRSASFLILEQKFFELLHAEKVMEALKTLRTEISPLSVYSNRVR 172
             +  L+++       V SA FL+  Q   E L   +   AL  LR  +S L V   +V 
Sbjct: 67  ACVTFLNSITEILGESVESALFLVFRQTVMEYLKRGEDGLALDVLRKRVSALRVDRFKVH 126

Query: 173 ELSSCMVSPSPKQDILKVRSRSXXXXXXXXXXXXTVMIPEKRLEHLVEQALILQREACPF 232
            L++ +V+ +   ++++   R              + IP+ RLEHLVE  +    ++C +
Sbjct: 127 SLANSVVNLN--DEVVEGDLRGKLLMDLEKLLPPPISIPDGRLEHLVETTVTAWVDSCLY 184

Query: 233 HNSLDKEMSLYSDHHCGKDQIPSKTLQV 260
           H+SL+  +SLY DH CG+D  P+ T Q+
Sbjct: 185 HSSLNP-VSLYEDHSCGRDHFPTTTTQI 211