Miyakogusa Predicted Gene

Lj2g3v3059790.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3059790.1 tr|G7IA61|G7IA61_MEDTR Transcription factor
bHLH130 OS=Medicago truncatula GN=MTR_1g062000 PE=4
SV=1,43.8,8e-18,FMN-binding split barrel,FMN-binding split
barrel-related; seg,NULL,CUFF.39703.1
         (453 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g090150.1 | PPR superfamily protein | HC | chr5:39269345-3...   561   e-160
Medtr6g052360.1 | PPR superfamily protein, putative | HC | chr6:...   140   3e-33
Medtr6g052360.3 | PPR superfamily protein, putative | HC | chr6:...   100   4e-21
Medtr6g052360.2 | PPR superfamily protein, putative | HC | chr6:...    97   5e-20

>Medtr5g090150.1 | PPR superfamily protein | HC |
           chr5:39269345-39262550 | 20130731
          Length = 445

 Score =  561 bits (1445), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 289/434 (66%), Positives = 329/434 (75%), Gaps = 6/434 (1%)

Query: 20  EGICYPTTSYGIACNSIRCPIDGRRMHDLTSTRCKSPFFGSSPFLWPSTGHDLSLSKLFV 79
           EGICYPT SYGI CNSI+ PIDGRR+HDLTSTRCKSPFFGSS F W STGHD  +SK+ V
Sbjct: 12  EGICYPT-SYGITCNSIKFPIDGRRVHDLTSTRCKSPFFGSSRFFWQSTGHDF-VSKIGV 69

Query: 80  AAXXXXXXXXXXXXXXHQGYHPLEELKVSNDSQPARLSPAVIAKTTIEANDHALLVFPGM 139
           AA               QGYHPLEELKVSND  PARLS A IA+TTIEAN +ALLVFPG 
Sbjct: 70  AADYSDSIPDSSSYMGKQGYHPLEELKVSNDLPPARLSSAEIARTTIEANKNALLVFPGS 129

Query: 140 VHCEPHAQISWAEYEYLIDDYGDMYIEIFDGANLLEDWEANNPVNALIGMDIPIYDNRRT 199
           VH EPH QISWAE++YLIDD+GD+Y EIFD  NLLED  A+NPVNALIGMDIP+YDNRR 
Sbjct: 130 VHSEPHEQISWAEFQYLIDDFGDLYFEIFDDVNLLEDRGAHNPVNALIGMDIPMYDNRRP 189

Query: 200 ASEDAIFNSGDDDEFPFDDGYIEVLEMEDINTPVNWRQPDINSSAHPLYFSKCLTKAVNM 259
            SE  IFN G  DEFPFD+ YIEV E+E+ N PVNW   D ++  HP+YFSKCL KAVN+
Sbjct: 190 ISEYDIFNGGITDEFPFDEDYIEVPEIEESNAPVNWGLSDNSNPVHPIYFSKCLEKAVNV 249

Query: 260 ECEKSMNCPSNGVSILGYLRPAYADEESYVRRMYPTEVSDGYSSDRKDGKDFYSSSINDQ 319
           E +K M+ PSNGVSILGYLRPAYADEESY+R +Y TE  DGYSS   D KDFYS+SINDQ
Sbjct: 250 EYDKRMDHPSNGVSILGYLRPAYADEESYIRMIYHTEDDDGYSS---DWKDFYSNSINDQ 306

Query: 320 RDTSLTLYRLEIVKIKLHSVYGCQSDISFQEFQRAEPDILVHSSLAIVEHFNQNXXXXXX 379
           RD +L LY+LEI KIKLH VYG QS+IS  EFQ AEPDI+V+S+ AI+E  N+N      
Sbjct: 307 RDANLILYKLEIEKIKLHCVYGSQSEISLLEFQDAEPDIIVYSTSAILERINRNGHDALQ 366

Query: 380 XXXXXXXXXXERAHLIGVDSLGLDLRVFSGTEVKSHRFPFKVQANSVYAAEKQIWRLLFP 439
                     E AHLIGVD LG+D+RV SG+EVK+HRF FKVQANS Y AEKQI +LL+P
Sbjct: 367 AFCKKKGLDAEEAHLIGVDHLGVDVRVLSGSEVKTHRFAFKVQANSGYMAEKQIVQLLYP 426

Query: 440 PCRRKKNT-KSRRN 452
             RRK+N  +S RN
Sbjct: 427 RSRRKRNMQQSLRN 440


>Medtr6g052360.1 | PPR superfamily protein, putative | HC |
           chr6:18289368-18281384 | 20130731
          Length = 524

 Score =  140 bits (352), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 113/419 (26%), Positives = 192/419 (45%), Gaps = 65/419 (15%)

Query: 99  YHPLEELKVSN--DSQPARLSPAVIAKTTIEANDHALLVFPGMVHCEPHAQISWAEYEYL 156
           YHP EE+  S    S+  RL+ A  ++T IE N  A +VF   V+ E H  I W +  YL
Sbjct: 104 YHPFEEIAASTLEISEDVRLTAAETSRTVIEVNSKATMVFSTFVNDEYHDNIVWPDLPYL 163

Query: 157 IDDYGDMYIEIFDGANLLEDWEA-NNPVNALIGMDIP--IYDNRRTASEDAIF------- 206
            D++G++Y +   G ++L+   + NN V  ++G+D    I +   +   +  F       
Sbjct: 164 TDEHGNIYFQAKPGEDILQSLTSENNFVQVIVGVDTMEMISEMDLSGPSEIDFGIEEIDD 223

Query: 207 ---------------NSGDDDEFPFDDGYIEVLEMEDINTPVN------WRQPDINSSAH 245
                          N  +D+   +D  ++ VL  +D     +      W + +    +H
Sbjct: 224 EDTDDLDDSDVEDDVNENEDENEDYDSEWLAVLSDDDELDDDDDEALADWAKLETMRFSH 283

Query: 246 PLYFSKCLTKAVNMECEKSMNCPSNGVSILGYLRPAYADEESYVRRMYPTEVS------- 298
           P+ F+K LT+  + +    M  P   V   G +RPA+ +E S +++      S       
Sbjct: 284 PMDFAKKLTEIASDDPIDWMEQPPACVVFQGVIRPAFIEENSPIQKHLSANQSSTAEISK 343

Query: 299 ------------DGYSSDRKDGKDFYSSSI--NDQRDT---SLTLYRLEIVKIKLHSVYG 341
                       +G+  +++  +D  S  +  N+  DT     + YRLEIVKI++ S +G
Sbjct: 344 VTENKEESVGAINGHEHNKESSEDNASQKVENNENGDTPSDETSFYRLEIVKIQVFSAHG 403

Query: 342 CQSDISFQEFQRAEPDILVHSSLAIVEHFNQNXXXXXXXXXXXXX------XXXERAHLI 395
               +  +++ +A+PD +  SS  I+ H                          E A LI
Sbjct: 404 HPVVLEVEDYTKAQPDAIARSSSKIISHLKAAGESEKTLQALKSLCWICKGIQVEEAQLI 463

Query: 396 GVDSLGLDLRVFSGTEVKSHRFPFKVQANSVYAAEKQIWRLLFPPC--RRKKNTKSRRN 452
            VDSLG D+RV SGT+V++ RF FK +A S Y+AE+Q+  +LFP    +++K  ++ +N
Sbjct: 464 CVDSLGFDVRVCSGTQVQTLRFGFKKRATSEYSAERQLNDILFPRNHPKQQKTKQTHQN 522


>Medtr6g052360.3 | PPR superfamily protein, putative | HC |
           chr6:18285175-18281384 | 20130731
          Length = 325

 Score =  100 bits (248), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 120/250 (48%), Gaps = 32/250 (12%)

Query: 235 WRQPDINSSAHPLYFSKCLTKAVNMECEKSMNCPSNGVSILGYLRPAYADEESYVRRMYP 294
           W + +    +HP+ F+K LT+  + +    M  P   V   G +RPA+ +E S +++   
Sbjct: 74  WAKLETMRFSHPMDFAKKLTEIASDDPIDWMEQPPACVVFQGVIRPAFIEENSPIQKHLS 133

Query: 295 TEVS-------------------DGYSSDRKDGKDFYSSSI--NDQRDT---SLTLYRLE 330
              S                   +G+  +++  +D  S  +  N+  DT     + YRLE
Sbjct: 134 ANQSSTAEISKVTENKEESVGAINGHEHNKESSEDNASQKVENNENGDTPSDETSFYRLE 193

Query: 331 IVKIKLHSVYGCQSDISFQEFQRAEPDILVHSSLAIVEHFNQNXXXXXXXXXXXXX---- 386
           IVKI++ S +G    +  +++ +A+PD +  SS  I+ H                     
Sbjct: 194 IVKIQVFSAHGHPVVLEVEDYTKAQPDAIARSSSKIISHLKAAGESEKTLQALKSLCWIC 253

Query: 387 --XXXERAHLIGVDSLGLDLRVFSGTEVKSHRFPFKVQANSVYAAEKQIWRLLFPPC--R 442
                E A LI VDSLG D+RV SGT+V++ RF FK +A S Y+AE+Q+  +LFP    +
Sbjct: 254 KGIQVEEAQLICVDSLGFDVRVCSGTQVQTLRFGFKKRATSEYSAERQLNDILFPRNHPK 313

Query: 443 RKKNTKSRRN 452
           ++K  ++ +N
Sbjct: 314 QQKTKQTHQN 323


>Medtr6g052360.2 | PPR superfamily protein, putative | HC |
           chr6:18289348-18281384 | 20130731
          Length = 461

 Score = 96.7 bits (239), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 146/329 (44%), Gaps = 57/329 (17%)

Query: 99  YHPLEELKVSN--DSQPARLSPAVIAKTTIEANDHALLVFPGMVHCEPHAQISWAEYEYL 156
           YHP EE+  S    S+  RL+ A  ++T IE N  A +VF   V+ E H  I W +  YL
Sbjct: 104 YHPFEEIAASTLEISEDVRLTAAETSRTVIEVNSKATMVFSTFVNDEYHDNIVWPDLPYL 163

Query: 157 IDDYGDMYIEIFDGANLLEDWEA-NNPVNALIGMDI--PIYDNRRTASEDAIF------- 206
            D++G++Y +   G ++L+   + NN V  ++G+D    I +   +   +  F       
Sbjct: 164 TDEHGNIYFQAKPGEDILQSLTSENNFVQVIVGVDTMEMISEMDLSGPSEIDFGIEEIDD 223

Query: 207 ---------------NSGDDDEFPFDDGYIEVLE------MEDINTPVNWRQPDINSSAH 245
                          N  +D+   +D  ++ VL        +D     +W + +    +H
Sbjct: 224 EDTDDLDDSDVEDDVNENEDENEDYDSEWLAVLSDDDELDDDDDEALADWAKLETMRFSH 283

Query: 246 PLYFSKCLTKAVNMECEKSMNCPSNGVSILGYLRPAYADEESYVRRMYPTEVS------- 298
           P+ F+K LT+  + +    M  P   V   G +RPA+ +E S +++      S       
Sbjct: 284 PMDFAKKLTEIASDDPIDWMEQPPACVVFQGVIRPAFIEENSPIQKHLSANQSSTAEISK 343

Query: 299 ------------DGYSSDRKDGKDFYSSSI--NDQRDT---SLTLYRLEIVKIKLHSVYG 341
                       +G+  +++  +D  S  +  N+  DT     + YRLEIVKI++ S +G
Sbjct: 344 VTENKEESVGAINGHEHNKESSEDNASQKVENNENGDTPSDETSFYRLEIVKIQVFSAHG 403

Query: 342 CQSDISFQEFQRAEPDILVHSSLAIVEHF 370
               +  +++ +A+PD +  SS  I+ H 
Sbjct: 404 HPVVLEVEDYTKAQPDAIARSSSKIISHL 432