Miyakogusa Predicted Gene

Lj2g3v3055290.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3055290.2 tr|Q9SGP0|Q9SGP0_ARATH F3M18.14 OS=Arabidopsis
thaliana GN=At1g28420 PE=3 SV=1,30.28,4e-17,Homeobox,Homeodomain; no
description,Homeodomain-like; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NU,CUFF.39636.2
         (494 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g089870.1 | homeobox leucine zipper protein | HC | chr5:39...   638   0.0  
Medtr3g045830.1 | homeobox leucine zipper protein | HC | chr3:15...   505   e-143
Medtr2g014490.1 | homeobox domain protein | HC | chr2:4156582-41...    72   2e-12
Medtr2g014490.2 | homeobox domain protein | HC | chr2:4157060-41...    72   2e-12
Medtr4g088375.1 | homeobox domain protein | HC | chr4:34983103-3...    71   3e-12
Medtr4g088375.2 | homeobox domain protein | HC | chr4:34983103-3...    71   3e-12
Medtr4g088375.4 | homeobox domain protein | HC | chr4:34983006-3...    71   3e-12
Medtr4g078860.1 | homeodomain transcriptional regulator | HC | c...    64   3e-10
Medtr4g078860.4 | homeodomain transcriptional regulator | HC | c...    64   3e-10
Medtr4g078860.2 | homeodomain transcriptional regulator | HC | c...    64   4e-10
Medtr4g078860.3 | homeodomain transcriptional regulator | HC | c...    64   5e-10

>Medtr5g089870.1 | homeobox leucine zipper protein | HC |
           chr5:39090039-39096030 | 20130731
          Length = 544

 Score =  638 bits (1646), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/483 (68%), Positives = 379/483 (78%), Gaps = 28/483 (5%)

Query: 22  RKLKTPAQLMALEKFYDAHKYPSEEKKLKLAEEIGLTEKQVSGWFCHRRLKDKRLLKDEA 81
           RKLKTPAQL  LEKFY  HKYP+EE KL +AEE+ LTEKQVSGWFCHRRLKDKRLLK+EA
Sbjct: 22  RKLKTPAQLKGLEKFYTEHKYPTEELKLAIAEELELTEKQVSGWFCHRRLKDKRLLKEEA 81

Query: 82  VANGRQDRSSGVIQDRGSGLGQDSCGSSKHGDNKHLDPKEAESHGIYNQDISVADMTYGR 141
            ANGRQDRSSGVIQDRGSGLGQDSCGSSKHGD K+LDPKE ES+G+YN+D+SVADMTYGR
Sbjct: 82  NANGRQDRSSGVIQDRGSGLGQDSCGSSKHGDYKYLDPKEVESNGLYNRDLSVADMTYGR 141

Query: 142 RDYYPENGRGMDDTSSESSS-FLQERLYSQGQDPYDMEPSRHRTPSGSLPPLNPKSATKM 200
           R+++ EN  GMDD +S  SS +LQER+Y QGQDPY+MEPSR+   S +LPPLNPK A  M
Sbjct: 142 RNHFSENVSGMDDDTSSESSSYLQERMYPQGQDPYEMEPSRY---SKALPPLNPKGAINM 198

Query: 201 GYKPSGYLKVKGEIEHAAITAVKKQLGRHYLEDGPLLGVEFDPLPPGAFEFQTEYPVHEA 260
           GYKPSGYLKVKGEIEHAAITAVKKQLGR+Y EDGPLLGVEFDPLPPGAFE QTE  VHE 
Sbjct: 199 GYKPSGYLKVKGEIEHAAITAVKKQLGRNYQEDGPLLGVEFDPLPPGAFECQTEEAVHEP 258

Query: 261 YHVANPVHLNSPEVPAVKRQPNLSSRHDSYYTKFSSQDSHMEGVDFGFLQDYDVQDTQDK 320
           YH+A+P  LNSPE+  VK +P LSSR+DSYYTK  SQD+HMEGVDFG L D  VQD QDK
Sbjct: 259 YHIADPALLNSPEISTVKSRPGLSSRYDSYYTKHGSQDTHMEGVDFGSLHDVHVQDKQDK 318

Query: 321 KARQDINYSQTFYNDANNFPGRNSSQDLYEDSTREVSAYNSSKNHKMGKGNKRGVEGMRS 380
           KA     + QTF ++A  FPGRNSS DLYEDST E +AYN +KNH+  K  KRGVEG+RS
Sbjct: 319 KALHGTKHRQTFQSNAGRFPGRNSSLDLYEDSTGE-AAYNITKNHR--KDAKRGVEGIRS 375

Query: 381 YSTSNHRDHYEDDIAVKPT---------------------DILLLEYDNIDPKNVQRSEH 419
            STSNH D YE+++ VK +                     DIL  +YDN++PK   RSEH
Sbjct: 376 DSTSNHSDRYEENLPVKHSDFLQYNYENTNQKNVQRSVHADILQYDYDNVNPKKAPRSEH 435

Query: 420 VKSKPSNSIRKSRVPMDPEERGLSTRMAKEEVFKGDRKAKKKYRNADGVGMLSNEIAVLD 479
           +KSKPSNSI  SR  +D EERGLS+RM K+E+FKGDRK+KK+YR+A G GMLSNE  V  
Sbjct: 436 IKSKPSNSIHNSRGSVDTEERGLSSRMTKDELFKGDRKSKKQYRDAGGAGMLSNETMVAK 495

Query: 480 VLQ 482
            L+
Sbjct: 496 RLK 498


>Medtr3g045830.1 | homeobox leucine zipper protein | HC |
           chr3:15030477-15035870 | 20130731
          Length = 507

 Score =  505 bits (1300), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 271/459 (59%), Positives = 323/459 (70%), Gaps = 28/459 (6%)

Query: 22  RKLKTPAQLMALEKFYDAHKYPSEEKKLKLAEEIGLTEKQVSGWFCHRRLKDKRLLKDEA 81
           RKLKTPAQLMALE FY+ HKYP+EE K++LA E+ LTEKQ+SGWFCHRRLKDKRL+K E 
Sbjct: 22  RKLKTPAQLMALENFYNEHKYPTEEMKVELANELALTEKQISGWFCHRRLKDKRLMKGEV 81

Query: 82  VANGRQDRSSGVIQDRGSGLGQDSCGSSKHGDNKHLDPKEAESHGIYNQDISVADMTYGR 141
            ANGRQD+SSGV+QDR SGL QDSCGS+KHG+ + LDPKE ESHG+YN ++ VADM Y  
Sbjct: 82  CANGRQDQSSGVVQDRVSGLRQDSCGSTKHGEYRCLDPKEVESHGLYNHEVLVADMKYVL 141

Query: 142 RDYYPENGRGMDDTSSESSSFLQERLYSQGQDPYDMEPSRHRTPSGSLPPLNPKSATKMG 201
           R++  EN    D++S ESSS LQER Y QGQDPYDME SRH TP+G+LPPLNP      G
Sbjct: 142 RNHCTENDSETDNSSPESSSSLQERYYLQGQDPYDMELSRHATPNGALPPLNP-----TG 196

Query: 202 YKPSGYLKVKGEIEHAAITAVKKQLGRHYLEDGPLLGVEFDPLPPGAFEFQTEYPVHEAY 261
           YKPSGYLKVK EIEHAAITAVK +LGRH+LEDGPLL V+FD +PPGAFEFQT  PV+E Y
Sbjct: 197 YKPSGYLKVKKEIEHAAITAVKNRLGRHFLEDGPLLNVDFDTIPPGAFEFQTANPVNETY 256

Query: 262 HVANPVHLNSPEVPAVKRQPNLSSRHDSYYTKFSSQDSHMEGVDFGFLQDYDVQDTQDKK 321
           HVANP   NSPE  A  RQ  L+S  D Y  K SS                  QD QDKK
Sbjct: 257 HVANPSLSNSPEDCAPNRQSCLNSSIDLYMNKLSS------------------QDFQDKK 298

Query: 322 ARQDINYSQTFYN---DANNFPGRNSSQDLYEDSTREVSAYNSSKNHKMGKGNKRGVEGM 378
           + Q I     F       N+ PG+N   DL  DST E  +YN ++NH++  G K GVE M
Sbjct: 299 SHQLIQQRTNFQGRPIHTNHLPGKNFPVDLNVDSTGEAPSYNGTRNHRI--GTKHGVERM 356

Query: 379 RSYSTSNHRDHYEDDIAVKPTDILLLEYDNIDPKNVQRSEHVKSKPSNSIRKSRVPMDPE 438
           RS S SN   ++E+++ +  +D LL  Y+N + KNVQRS ++KS+PSN++  SR+ MD E
Sbjct: 357 RSDSASNPNRYHENNLVIMKSDPLLHGYNNGNVKNVQRSGYIKSEPSNAMHNSRISMDSE 416

Query: 439 ERGLSTRMAKEEVFKGDRKAKKKYRNADGVGMLSNEIAV 477
           ERGLS  MAKEE F G RK KK+Y  +DGV M S EI V
Sbjct: 417 ERGLSEWMAKEEKFNGTRKIKKEYHESDGVRMPSREIVV 455


>Medtr2g014490.1 | homeobox domain protein | HC |
          chr2:4156582-4148228 | 20130731
          Length = 1796

 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 43/56 (76%)

Query: 22 RKLKTPAQLMALEKFYDAHKYPSEEKKLKLAEEIGLTEKQVSGWFCHRRLKDKRLL 77
          R++KTP QL  LEK Y    YPSE  +++L+E++GL+++Q+  WFCHRRLKDK+ L
Sbjct: 44 RQMKTPFQLEMLEKAYALETYPSETTRIELSEKLGLSDRQLQMWFCHRRLKDKKEL 99



 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/36 (61%), Positives = 26/36 (72%)

Query: 214 IEHAAITAVKKQLGRHYLEDGPLLGVEFDPLPPGAF 249
           +E  AI  V+ QLG    EDGP+LG+EFDPLPP AF
Sbjct: 164 MELRAIACVEAQLGEPLREDGPILGIEFDPLPPDAF 199


>Medtr2g014490.2 | homeobox domain protein | HC |
          chr2:4157060-4148227 | 20130731
          Length = 1807

 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 43/56 (76%)

Query: 22 RKLKTPAQLMALEKFYDAHKYPSEEKKLKLAEEIGLTEKQVSGWFCHRRLKDKRLL 77
          R++KTP QL  LEK Y    YPSE  +++L+E++GL+++Q+  WFCHRRLKDK+ L
Sbjct: 44 RQMKTPFQLEMLEKAYALETYPSETTRIELSEKLGLSDRQLQMWFCHRRLKDKKEL 99



 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/36 (61%), Positives = 26/36 (72%)

Query: 214 IEHAAITAVKKQLGRHYLEDGPLLGVEFDPLPPGAF 249
           +E  AI  V+ QLG    EDGP+LG+EFDPLPP AF
Sbjct: 164 MELRAIACVEAQLGEPLREDGPILGIEFDPLPPDAF 199


>Medtr4g088375.1 | homeobox domain protein | HC |
          chr4:34983103-34993442 | 20130731
          Length = 1717

 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 41/54 (75%)

Query: 22 RKLKTPAQLMALEKFYDAHKYPSEEKKLKLAEEIGLTEKQVSGWFCHRRLKDKR 75
          R++KTP QL  LEK Y    YPSE  ++ L+E++GLT++Q+  WFCHRRLKDK+
Sbjct: 35 RQMKTPFQLETLEKAYALDNYPSEPVRIDLSEKLGLTDRQLQMWFCHRRLKDKK 88



 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 36/62 (58%), Gaps = 6/62 (9%)

Query: 190 PPLNPKSATKM--GYKPSGYLKVKGEIEHAAITAVKKQLGRHYLEDGPLLGVEFDPLPPG 247
           P L P++A  +  GY    Y     E+E  AI  V+ QLG    ED P++GVEFDPLPP 
Sbjct: 134 PGLEPRNAMALSVGY----YESPHDEMELKAIACVEDQLGEPLREDAPIIGVEFDPLPPD 189

Query: 248 AF 249
           AF
Sbjct: 190 AF 191


>Medtr4g088375.2 | homeobox domain protein | HC |
          chr4:34983103-34993442 | 20130731
          Length = 1683

 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 41/54 (75%)

Query: 22 RKLKTPAQLMALEKFYDAHKYPSEEKKLKLAEEIGLTEKQVSGWFCHRRLKDKR 75
          R++KTP QL  LEK Y    YPSE  ++ L+E++GLT++Q+  WFCHRRLKDK+
Sbjct: 35 RQMKTPFQLETLEKAYALDNYPSEPVRIDLSEKLGLTDRQLQMWFCHRRLKDKK 88



 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 6/62 (9%)

Query: 190 PPLNPKSATKM--GYKPSGYLKVKGEIEHAAITAVKKQLGRHYLEDGPLLGVEFDPLPPG 247
           P L P++A  +  GY  S +     E+E  AI  V+ QLG    ED P++GVEFDPLPP 
Sbjct: 134 PGLEPRNAMALSVGYYESPH----DEMELKAIACVEDQLGEPLREDAPIIGVEFDPLPPD 189

Query: 248 AF 249
           AF
Sbjct: 190 AF 191


>Medtr4g088375.4 | homeobox domain protein | HC |
          chr4:34983006-34993442 | 20130731
          Length = 1682

 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 41/54 (75%)

Query: 22 RKLKTPAQLMALEKFYDAHKYPSEEKKLKLAEEIGLTEKQVSGWFCHRRLKDKR 75
          R++KTP QL  LEK Y    YPSE  ++ L+E++GLT++Q+  WFCHRRLKDK+
Sbjct: 35 RQMKTPFQLETLEKAYALDNYPSEPVRIDLSEKLGLTDRQLQMWFCHRRLKDKK 88



 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 6/62 (9%)

Query: 190 PPLNPKSATKM--GYKPSGYLKVKGEIEHAAITAVKKQLGRHYLEDGPLLGVEFDPLPPG 247
           P L P++A  +  GY  S +     E+E  AI  V+ QLG    ED P++GVEFDPLPP 
Sbjct: 134 PGLEPRNAMALSVGYYESPH----DEMELKAIACVEDQLGEPLREDAPIIGVEFDPLPPD 189

Query: 248 AF 249
           AF
Sbjct: 190 AF 191


>Medtr4g078860.1 | homeodomain transcriptional regulator | HC |
          chr4:30499257-30483381 | 20130731
          Length = 1763

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 39/54 (72%)

Query: 22 RKLKTPAQLMALEKFYDAHKYPSEEKKLKLAEEIGLTEKQVSGWFCHRRLKDKR 75
          RK KTP+QL  LEK Y    YPSE  + +LA ++GL+++Q+  WFCHRR KD++
Sbjct: 23 RKKKTPSQLEILEKTYAMETYPSEATRGELAVKLGLSDRQLQMWFCHRRQKDRK 76


>Medtr4g078860.4 | homeodomain transcriptional regulator | HC |
          chr4:30499257-30483381 | 20130731
          Length = 1737

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 39/54 (72%)

Query: 22 RKLKTPAQLMALEKFYDAHKYPSEEKKLKLAEEIGLTEKQVSGWFCHRRLKDKR 75
          RK KTP+QL  LEK Y    YPSE  + +LA ++GL+++Q+  WFCHRR KD++
Sbjct: 23 RKKKTPSQLEILEKTYAMETYPSEATRGELAVKLGLSDRQLQMWFCHRRQKDRK 76


>Medtr4g078860.2 | homeodomain transcriptional regulator | HC |
          chr4:30499257-30483381 | 20130731
          Length = 1513

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 39/54 (72%)

Query: 22 RKLKTPAQLMALEKFYDAHKYPSEEKKLKLAEEIGLTEKQVSGWFCHRRLKDKR 75
          RK KTP+QL  LEK Y    YPSE  + +LA ++GL+++Q+  WFCHRR KD++
Sbjct: 23 RKKKTPSQLEILEKTYAMETYPSEATRGELAVKLGLSDRQLQMWFCHRRQKDRK 76


>Medtr4g078860.3 | homeodomain transcriptional regulator | HC |
          chr4:30499085-30486036 | 20130731
          Length = 1413

 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 39/54 (72%)

Query: 22 RKLKTPAQLMALEKFYDAHKYPSEEKKLKLAEEIGLTEKQVSGWFCHRRLKDKR 75
          RK KTP+QL  LEK Y    YPSE  + +LA ++GL+++Q+  WFCHRR KD++
Sbjct: 23 RKKKTPSQLEILEKTYAMETYPSEATRGELAVKLGLSDRQLQMWFCHRRQKDRK 76