Miyakogusa Predicted Gene

Lj2g3v3034080.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3034080.1 tr|I3WTA0|I3WTA0_NICAT Jasmonate ZIM domain
protein c.1 OS=Nicotiana attenuata PE=2 SV=1,39.62,5e-17,
,NODE_39350_length_639_cov_118.212830.path1.1
         (158 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g031930.1 | jasmonate zim-domain protein | HC | chr1:11247...   143   8e-35
Medtr1g031930.2 | jasmonate zim-domain protein | HC | chr1:11247...    84   8e-17

>Medtr1g031930.1 | jasmonate zim-domain protein | HC |
           chr1:11247549-11243460 | 20130731
          Length = 361

 Score =  143 bits (360), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 82/167 (49%), Positives = 102/167 (61%), Gaps = 14/167 (8%)

Query: 1   MERDFMGLSSKEPLSVIKEEIKNDGWIDSGFTKGSVAQWPFTNKVSAFPHVMSFKVSQDE 60
           MERDF+ L SKE       EI N+G  +SGF+  S  +WPF NKV+   ++  FKVS+D+
Sbjct: 1   MERDFLSLCSKES----SPEINNEGSKNSGFSNVSAVKWPFLNKVAVHSYLTPFKVSEDD 56

Query: 61  RTKRMVSE-PQKSLNLNEQGGIHFSLAPHPVQH---------DGKMFSVSNQAISAPLGN 110
           + K + S   Q S   + Q GIHFS+  +PVQH         D KMF +SNQA S    +
Sbjct: 57  KAKMISSGFIQNSFKHDGQVGIHFSVNQYPVQHNVNFMNRHHDVKMFPISNQANSLSAVH 116

Query: 111 PFQKNHFAAAGQNMNGANVKLPLLGGKPVTAPHSSLPTIGAVAGMSE 157
           P  KNH A  GQN+NGAN K  LLGG PVTAPHS LP +G VAG+ E
Sbjct: 117 PLLKNHLATFGQNINGANAKQSLLGGLPVTAPHSVLPIVGTVAGLVE 163


>Medtr1g031930.2 | jasmonate zim-domain protein | HC |
           chr1:11247525-11243460 | 20130731
          Length = 300

 Score = 83.6 bits (205), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 71/157 (45%), Gaps = 55/157 (35%)

Query: 1   MERDFMGLSSKEPLSVIKEEIKNDGWIDSGFTKGSVAQWPFTNKVSAFPHVMSFKVSQDE 60
           MERDF+ L SKE       EI N+G  +SGF+  S  +WPF NKV+   ++  FKVS+D+
Sbjct: 1   MERDFLSLCSKES----SPEINNEGSKNSGFSNVSAVKWPFLNKVAVHSYLTPFKVSEDD 56

Query: 61  RTKRMVSEPQKSLNLNEQGGIHFSLAPHPVQHDGKMFSVSNQAISAPLGNPFQKNHFAAA 120
           + K + S           G I                                       
Sbjct: 57  KAKMISS-----------GFIQ-------------------------------------- 67

Query: 121 GQNMNGANVKLPLLGGKPVTAPHSSLPTIGAVAGMSE 157
             N+NGAN K  LLGG PVTAPHS LP +G VAG+ E
Sbjct: 68  --NINGANAKQSLLGGLPVTAPHSVLPIVGTVAGLVE 102