Miyakogusa Predicted Gene

Lj2g3v3034040.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3034040.1 tr|B9HJE6|B9HJE6_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_766170 PE=4
SV=1,63.38,2e-18,4FE4S_FER_1,4Fe-4S ferredoxin, iron-sulphur binding,
conserved site; PUTATIVE UNCHARACTERIZED
PROTEI,NODE_66079_length_1171_cov_62.030743.path2.1
         (277 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g104920.1 | F-box SKIP28-like protein | HC | chr8:44233342...   392   e-109
Medtr8g080000.1 | F-box SKIP28-like protein | HC | chr8:34350638...   123   2e-28

>Medtr8g104920.1 | F-box SKIP28-like protein | HC |
           chr8:44233342-44235029 | 20130731
          Length = 320

 Score =  392 bits (1007), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/277 (67%), Positives = 214/277 (77%)

Query: 1   MSQVCKALRDAVNNDVLPWLNVIVERPLSSRLSDEILVKITSKANGRLKTLALMNCTHIT 60
           MS+VC +LR AVNNDVL WL +IVE PL+SRLSD+ L+KITSKANGRL+TLALMNC H+ 
Sbjct: 44  MSRVCTSLRYAVNNDVLLWLKIIVETPLNSRLSDDTLLKITSKANGRLQTLALMNCIHVA 103

Query: 61  DKGLQRVVEQNPLINKLHIPACTGITAEGVTRAVQTLCQRSNCLSTLRINGIYNLQKEHL 120
           D GLQRVVEQNP I +LHIPACTGIT EGV  AV+TLCQR+NCL+TL +NGIYNLQ +HL
Sbjct: 104 DHGLQRVVEQNPFIEELHIPACTGITPEGVLTAVKTLCQRANCLTTLSLNGIYNLQNDHL 163

Query: 121 DMLAMNLRKNVPLEEQQMQKPNYYHKRGSFTVFSREENQRIIDLETCPKCFEVTMVYDCP 180
           D+L  NLRKN+PLE++  Q+P YYHKRGS + F   ENQRIIDLE CPKCFEV MVYDCP
Sbjct: 164 DVLTSNLRKNLPLEDELTQQPIYYHKRGSVSAFKHNENQRIIDLEKCPKCFEVRMVYDCP 223

Query: 181 KVECMKREKPQVQCRGCKFCIPRXXXXXXXXXXXXXXXXXXXXXXXXXXWLQLPKCNFCN 240
           KV+C ++E  Q QCRGC FCIPR                          WLQLPKCNFCN
Sbjct: 224 KVDCNRKELCQAQCRGCIFCIPRCENCGGCVGSEELEDVACGDFLCLECWLQLPKCNFCN 283

Query: 241 KPYCKQHENWWCSSLDPIFLCRVCDEHSHGYTYTDVL 277
           KPYCKQH NWWC+S +  FLCRVCDE+SHGYTYTDVL
Sbjct: 284 KPYCKQHTNWWCTSSESSFLCRVCDENSHGYTYTDVL 320


>Medtr8g080000.1 | F-box SKIP28-like protein | HC |
           chr8:34350638-34354636 | 20130731
          Length = 575

 Score =  123 bits (309), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 126/235 (53%), Gaps = 40/235 (17%)

Query: 1   MSQVCKALRDAVNNDVLPWLNVIVERPLSSRLSDEILVKITSKANGRLKTLALMNCTHIT 60
           + +VCK+L   V +  + W ++ +++PL+ R++D+IL+++T++A G L+ L+L+ CT IT
Sbjct: 297 LERVCKSLHSTVRDPQM-WTSIHIDQPLNERITDDILLELTNRAQGLLQCLSLVECTRIT 355

Query: 61  DKGLQRVVEQNPLINKLHIPACTGITAEGVTRAVQTLCQRSNCLST-----LRINGIYNL 115
           D GL+RV+E NP ++KL +P CT ++ EG+   ++      N + T     L I G+Y +
Sbjct: 356 DDGLRRVLEVNPKLSKLSVPGCTRLSIEGIVGMLKAY----NSMGTQKVKHLHIGGLYGV 411

Query: 116 QKEHLDMLAM-------------------NLRKNVPLEE-------QQMQKPNYYHKRGS 149
            ++H + + +                   N R + P E        +   KP++Y +   
Sbjct: 412 TQKHFEQIKLLLGTDKKRLENALDSQPHENARDSQPQENAPDSQLLEHSHKPHFYCR--- 468

Query: 150 FTVFSREENQRIIDLETCPKCFEVTMVYDCPKVECMKREKPQVQ-CRGCKFCIPR 203
           + ++   ++ R +D+E CP+C  + +VYDCP   C        Q CR C  CIPR
Sbjct: 469 WNLYLPCDDDRDLDIEVCPRCQNLRLVYDCPAEGCQGVGGHATQLCRACTLCIPR 523