Miyakogusa Predicted Gene

Lj2g3v3034030.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3034030.1 tr|A9S6P3|A9S6P3_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_124931,46.99,0.000000000000001,no description,Dynein
light chain, type 1/2; DLC,Dynein light chain, type 1/2;
Dynein_light,Dynein l,NODE_55810_length_989_cov_44.591507.path2.1
         (133 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g104900.1 | dynein light chain type 1 family protein | HC ...   230   4e-61
Medtr1g031880.1 | dynein light chain type 1 family protein | HC ...   190   3e-49
Medtr4g107350.1 | dynein light chain type 1 family protein | HC ...   125   9e-30
Medtr4g114060.2 | dynein light chain type 1 family protein | HC ...   114   2e-26
Medtr4g114060.1 | dynein light chain type 1 family protein | HC ...   114   2e-26
Medtr2g101850.1 | cytoplasmic dynein light chain | HC | chr2:438...    77   6e-15
Medtr4g120150.1 | dynein light chain type 1 family protein | HC ...    75   2e-14
Medtr8g464690.1 | dynein light chain type 1 family protein | HC ...    74   3e-14
Medtr6g087770.1 | cytoplasmic dynein light chain | HC | chr6:330...    72   2e-13

>Medtr8g104900.1 | dynein light chain type 1 family protein | HC |
           chr8:44226350-44232514 | 20130731
          Length = 133

 Score =  230 bits (586), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 107/132 (81%), Positives = 117/132 (88%)

Query: 1   MEGAEEELERRSRFLKSLIQKKKVSEKQEQHDHIQNNNVRVRACDMPLLLQNRAFCCARD 60
           ME AEEELE+RS+FLKSLI+ KK  E+QEQH H  NNNV++RACDMPL LQN AF CAR 
Sbjct: 1   MERAEEELEKRSKFLKSLIKNKKTIEQQEQHQHFNNNNVKIRACDMPLTLQNHAFRCARH 60

Query: 61  LLDSMPANKLDTKRLALTLKKEFDSSYGPAWHCIVGSSFGSYVTHSLGGFLYFSIDKVYI 120
           LLDSMP  KL TKRLALTLKKEFDS+YGPAWHCIVG+SFGSYVTHS+GGFLYFSIDKV+I
Sbjct: 61  LLDSMPPKKLHTKRLALTLKKEFDSTYGPAWHCIVGTSFGSYVTHSVGGFLYFSIDKVHI 120

Query: 121 LLFKTAVEPLDH 132
           LLFKT VEPLDH
Sbjct: 121 LLFKTTVEPLDH 132


>Medtr1g031880.1 | dynein light chain type 1 family protein | HC |
           chr1:11198739-11201405 | 20130731
          Length = 146

 Score =  190 bits (482), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 95/146 (65%), Positives = 112/146 (76%), Gaps = 14/146 (9%)

Query: 1   MEGAEEELERRSRFLKSLIQKKKV---------SEKQEQHDH-----IQNNNVRVRACDM 46
           ME AE+ELERRS+FL SLIQ KK           EK+++HD+     + NN++ V+ACDM
Sbjct: 1   MEEAEKELERRSKFLNSLIQNKKKKSTEQPEQKQEKEQEHDYKNNIKLNNNSIHVKACDM 60

Query: 47  PLLLQNRAFCCARDLLDSMPANKLDTKRLALTLKKEFDSSYGPAWHCIVGSSFGSYVTHS 106
            L LQ  AF  ARD LDSMP  K D+K LAL+LKKEFDS YGPAWHCIVG+SFGSYVTHS
Sbjct: 61  SLPLQKHAFQFARDHLDSMPTKKPDSKHLALSLKKEFDSCYGPAWHCIVGTSFGSYVTHS 120

Query: 107 LGGFLYFSIDKVYILLFKTAVEPLDH 132
           +GGF+YFSIDKV+ILLF+TAV PLDH
Sbjct: 121 VGGFVYFSIDKVHILLFRTAVAPLDH 146


>Medtr4g107350.1 | dynein light chain type 1 family protein | HC |
           chr4:44373665-44370969 | 20130731
          Length = 307

 Score =  125 bits (315), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 59/96 (61%), Positives = 72/96 (75%), Gaps = 3/96 (3%)

Query: 37  NNVRVRACDMPLLLQNRAFCCARDLLDSMPANKLDTKRLALTLKKEFDSSYGPAWHCIVG 96
           N  ++ + DMP  +Q  A  CAR   DSM   K  +K LAL+LKKEFD  YGPAWHCIVG
Sbjct: 214 NGAKMVSADMPPFMQIHAVDCARKAFDSM--EKFTSKTLALSLKKEFDGVYGPAWHCIVG 271

Query: 97  SSFGSYVTHSLGGFLYFSID-KVYILLFKTAVEPLD 131
           +SFGS+VTHS+GGFLYFS+D K+YIL+FKTAV+  D
Sbjct: 272 TSFGSFVTHSVGGFLYFSMDQKLYILIFKTAVQKAD 307


>Medtr4g114060.2 | dynein light chain type 1 family protein | HC |
           chr4:46940344-46937870 | 20130731
          Length = 245

 Score =  114 bits (285), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/124 (47%), Positives = 78/124 (62%), Gaps = 2/124 (1%)

Query: 5   EEELERRSRFLKSLIQKKKVSEKQEQHDHIQNNNVRVRACDMPLLLQNRAFCCARDLLDS 64
           E +L    +  K +  +K VS  +     I+   V+V   DMP  +Q  AF CAR   DS
Sbjct: 120 ETKLAAEEKVGKFVEARKSVSHIETLSSVIEKLQVKVLVSDMPSFMQVHAFRCARRTYDS 179

Query: 65  MPANKLDTKRLALTLKKEFDSSYGPAWHCIVGSSFGSYVTHSLGGFLYFSIDKVYILLFK 124
           +   +  +K +A  +KKEFD +YGPAWHCIVG SFGS+VTHS G FLYFS++ +YILLFK
Sbjct: 180 LE--EFSSKHIAHNIKKEFDKAYGPAWHCIVGPSFGSFVTHSTGCFLYFSMENLYILLFK 237

Query: 125 TAVE 128
           T V+
Sbjct: 238 TKVK 241


>Medtr4g114060.1 | dynein light chain type 1 family protein | HC |
           chr4:46940344-46937870 | 20130731
          Length = 245

 Score =  114 bits (285), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/124 (47%), Positives = 78/124 (62%), Gaps = 2/124 (1%)

Query: 5   EEELERRSRFLKSLIQKKKVSEKQEQHDHIQNNNVRVRACDMPLLLQNRAFCCARDLLDS 64
           E +L    +  K +  +K VS  +     I+   V+V   DMP  +Q  AF CAR   DS
Sbjct: 120 ETKLAAEEKVGKFVEARKSVSHIETLSSVIEKLQVKVLVSDMPSFMQVHAFRCARRTYDS 179

Query: 65  MPANKLDTKRLALTLKKEFDSSYGPAWHCIVGSSFGSYVTHSLGGFLYFSIDKVYILLFK 124
           +   +  +K +A  +KKEFD +YGPAWHCIVG SFGS+VTHS G FLYFS++ +YILLFK
Sbjct: 180 LE--EFSSKHIAHNIKKEFDKAYGPAWHCIVGPSFGSFVTHSTGCFLYFSMENLYILLFK 237

Query: 125 TAVE 128
           T V+
Sbjct: 238 TKVK 241


>Medtr2g101850.1 | cytoplasmic dynein light chain | HC |
           chr2:43819163-43818213 | 20130731
          Length = 91

 Score = 76.6 bits (187), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 52/80 (65%), Gaps = 2/80 (2%)

Query: 45  DMPLLLQNRAFCCARDLLDSMPANKLDTKRLALTLKKEFDSSYGPAWHCIVGSSFGSYVT 104
           DMP  +Q +A   A + LD    + +D K +A  +KKEFD+ YG  W C+VGSSFG + T
Sbjct: 12  DMPTKMQIQAMAYASEALD--LYDVIDCKSIAAHIKKEFDARYGGGWQCVVGSSFGCFFT 69

Query: 105 HSLGGFLYFSIDKVYILLFK 124
           HS G F+YF+++ +  L+FK
Sbjct: 70  HSKGTFIYFTLETLNFLIFK 89


>Medtr4g120150.1 | dynein light chain type 1 family protein | HC |
           chr4:49807388-49810451 | 20130731
          Length = 130

 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 40/54 (74%)

Query: 73  KRLALTLKKEFDSSYGPAWHCIVGSSFGSYVTHSLGGFLYFSIDKVYILLFKTA 126
           K +A T+KKEFD  +GP WHCIVG +FGSYVTH    F+YF +D+  +LLFK+ 
Sbjct: 77  KDVAETIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 130


>Medtr8g464690.1 | dynein light chain type 1 family protein | HC |
           chr8:22911007-22910269 | 20130731
          Length = 109

 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 51/94 (54%), Gaps = 13/94 (13%)

Query: 49  LLQNRAFCCARDLLDSMPANKLDTKRLALT-------------LKKEFDSSYGPAWHCIV 95
           +L+ +A     D+L +M  + LD    AL              +KKEFD  +GP W CIV
Sbjct: 1   MLEGKAVIGETDMLQTMQQDALDLACKALDFYDVTEAIDIARFIKKEFDRVHGPGWQCIV 60

Query: 96  GSSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEP 129
           G+ FGS+VTH  G F+YF I  + ILLFK +  P
Sbjct: 61  GTDFGSFVTHCSGCFIYFCIGSMAILLFKGSAGP 94


>Medtr6g087770.1 | cytoplasmic dynein light chain | HC |
           chr6:33030451-33029408 | 20130731
          Length = 93

 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 2/86 (2%)

Query: 41  VRACDMPLLLQNRAFCCARDLLDSMPANKLDTKRLALTLKKEFDSSYGPAWHCIVGSSFG 100
           V   DMPL +Q +A   A   LD    +  D + +A  +KKEFD +YG  W C+VGS+FG
Sbjct: 8   VEETDMPLKMQIQAMSYASQALDLY--DVCDCRSIAGYIKKEFDKNYGSRWQCVVGSNFG 65

Query: 101 SYVTHSLGGFLYFSIDKVYILLFKTA 126
            + +H+ G F+YFS++ +  L++K A
Sbjct: 66  CFFSHTPGTFIYFSLETLKFLIYKGA 91