Miyakogusa Predicted Gene

Lj2g3v3022810.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3022810.1 Non Characterized Hit- tr|I3SB95|I3SB95_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,100,0,RRM_1,RNA
recognition motif domain; RRM,RNA recognition motif domain; SUBFAMILY
NOT NAMED,NULL; PRE-,CUFF.39612.1
         (125 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g089300.1 | Pre-mRNA branch site p14-like protein | HC | c...   250   3e-67
Medtr5g089300.2 | Pre-mRNA branch site p14-like protein | HC | c...   250   3e-67
Medtr5g089300.3 | Pre-mRNA branch site p14-like protein | HC | c...   250   3e-67
Medtr4g068120.2 | flowering time control FPA-like protein | HC |...    53   8e-08
Medtr4g068120.1 | flowering time control FPA-like protein | HC |...    53   8e-08
Medtr8g058530.1 | pre-mRNA-splicing factor SF2-like protein | HC...    51   2e-07
Medtr7g108810.1 | pre-mRNA-splicing factor SF2-like protein | HC...    50   4e-07
Medtr1g083400.1 | pre-mRNA-splicing factor SF2-like protein | HC...    49   8e-07
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-...    49   1e-06
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein...    48   2e-06
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein...    48   2e-06
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-...    48   3e-06
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-...    48   3e-06
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341...    47   3e-06
Medtr7g096260.2 | multiple RNA-binding domain protein | HC | chr...    47   5e-06
Medtr7g112760.1 | pre-mRNA-splicing factor SF2-like protein | HC...    46   7e-06
Medtr7g112760.2 | pre-mRNA-splicing factor SF2-like protein | HC...    46   7e-06
Medtr5g070100.1 | RNA recognition motif (RRM) containing protein...    46   9e-06

>Medtr5g089300.1 | Pre-mRNA branch site p14-like protein | HC |
           chr5:38804152-38805669 | 20130731
          Length = 124

 Score =  250 bits (638), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 121/123 (98%), Positives = 121/123 (98%)

Query: 1   MATISLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTTKDTRGTA 60
           M TISLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGT KDTRGTA
Sbjct: 1   MTTISLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTA 60

Query: 61  FVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGVS 120
           FVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGVS
Sbjct: 61  FVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGVS 120

Query: 121 TKD 123
           TKD
Sbjct: 121 TKD 123


>Medtr5g089300.2 | Pre-mRNA branch site p14-like protein | HC |
           chr5:38804088-38805909 | 20130731
          Length = 124

 Score =  250 bits (638), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 121/123 (98%), Positives = 121/123 (98%)

Query: 1   MATISLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTTKDTRGTA 60
           M TISLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGT KDTRGTA
Sbjct: 1   MTTISLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTA 60

Query: 61  FVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGVS 120
           FVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGVS
Sbjct: 61  FVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGVS 120

Query: 121 TKD 123
           TKD
Sbjct: 121 TKD 123


>Medtr5g089300.3 | Pre-mRNA branch site p14-like protein | HC |
           chr5:38804135-38805809 | 20130731
          Length = 124

 Score =  250 bits (638), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 121/123 (98%), Positives = 121/123 (98%)

Query: 1   MATISLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTTKDTRGTA 60
           M TISLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGT KDTRGTA
Sbjct: 1   MTTISLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTA 60

Query: 61  FVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGVS 120
           FVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGVS
Sbjct: 61  FVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGVS 120

Query: 121 TKD 123
           TKD
Sbjct: 121 TKD 123


>Medtr4g068120.2 | flowering time control FPA-like protein | HC |
           chr4:25458538-25448035 | 20130731
          Length = 973

 Score = 52.8 bits (125), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 3/81 (3%)

Query: 21  LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTTKDTRGTAFVVYEDIYDAKTAVDHLSGF 80
           LYV NL  ++T  ++ D+F +YGA+  +   T+   R  AFV ++ I DAK A + L GF
Sbjct: 29  LYVANLSPDVTDSDLMDLFVQYGALDSV---TSYSARNYAFVFFKRIDDAKAAKNALQGF 85

Query: 81  NVANRYLIVLYYQQAKMSKKF 101
           N     L + + + AK  K+ 
Sbjct: 86  NFRGNSLRIEFARPAKTCKQL 106


>Medtr4g068120.1 | flowering time control FPA-like protein | HC |
           chr4:25458538-25450507 | 20130731
          Length = 973

 Score = 52.8 bits (125), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 3/81 (3%)

Query: 21  LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTTKDTRGTAFVVYEDIYDAKTAVDHLSGF 80
           LYV NL  ++T  ++ D+F +YGA+  +   T+   R  AFV ++ I DAK A + L GF
Sbjct: 29  LYVANLSPDVTDSDLMDLFVQYGALDSV---TSYSARNYAFVFFKRIDDAKAAKNALQGF 85

Query: 81  NVANRYLIVLYYQQAKMSKKF 101
           N     L + + + AK  K+ 
Sbjct: 86  NFRGNSLRIEFARPAKTCKQL 106


>Medtr8g058530.1 | pre-mRNA-splicing factor SF2-like protein | HC
          | chr8:20148291-20144393 | 20130731
          Length = 303

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 39/72 (54%)

Query: 18 NRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTTKDTRGTAFVVYEDIYDAKTAVDHL 77
          +R +YV NLP +I   E+ D+F KYG I  I +       G AFV +ED+ DA+ A+   
Sbjct: 6  SRTVYVGNLPGDIREREVEDLFMKYGHITHIDLKVPPRPPGYAFVEFEDVQDAEDAIRGR 65

Query: 78 SGFNVANRYLIV 89
           G++     L V
Sbjct: 66 DGYDFDGHRLRV 77


>Medtr7g108810.1 | pre-mRNA-splicing factor SF2-like protein | HC |
           chr7:44331530-44321717 | 20130731
          Length = 401

 Score = 50.4 bits (119), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 41/76 (53%)

Query: 6   LRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTTKDTRGTAFVVYE 65
           L+    R+    +R +YV NLP +I   E+ D+F KYG I  I +       G AFV +E
Sbjct: 95  LKSKKRRMSRHSSRTVYVGNLPGDIREREVEDLFMKYGHITHIDLKVPPRPPGYAFVEFE 154

Query: 66  DIYDAKTAVDHLSGFN 81
           D+ DA+ A+    G++
Sbjct: 155 DVQDAEDAIRGRDGYD 170


>Medtr1g083400.1 | pre-mRNA-splicing factor SF2-like protein | HC |
           chr1:37124801-37119597 | 20130731
          Length = 290

 Score = 49.3 bits (116), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 40/72 (55%)

Query: 18  NRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTTKDTRGTAFVVYEDIYDAKTAVDHL 77
           +R LYV NLP +I   E+ D+F KYG I  I +       G AFV +ED  DA+ A+ + 
Sbjct: 37  SRTLYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIYYR 96

Query: 78  SGFNVANRYLIV 89
            G++     L+V
Sbjct: 97  DGYDFDGYRLLV 108


>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
           chr7:43324307-43322087 | 20130731
          Length = 318

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 3/84 (3%)

Query: 21  LYVRNLPFNITSEEMYDIFGKYGAIRQIRI---GTTKDTRGTAFVVYEDIYDAKTAVDHL 77
           LYV NLPF++TS ++ DIF + G +  + I     T  +RG AFV  +   +AK A+   
Sbjct: 111 LYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEAIRMF 170

Query: 78  SGFNVANRYLIVLYYQQAKMSKKF 101
            G  V  R   V + +  K  ++ 
Sbjct: 171 DGSQVGGRSAKVNFPEVPKGGERL 194


>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr1:24700218-24705084 | 20130731
          Length = 311

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 3/86 (3%)

Query: 18  NRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRI---GTTKDTRGTAFVVYEDIYDAKTAV 74
           +R L+V NLPF+++S ++  +FG+ G +  + I     T  +RG AFV   ++ DA+ A+
Sbjct: 107 SRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAI 166

Query: 75  DHLSGFNVANRYLIVLYYQQAKMSKK 100
               G  V  R + V + +   + K+
Sbjct: 167 RMFDGTTVGGRAIKVNFPEVPIVGKR 192


>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr1:24700221-24703822 | 20130731
          Length = 311

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 3/86 (3%)

Query: 18  NRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRI---GTTKDTRGTAFVVYEDIYDAKTAV 74
           +R L+V NLPF+++S ++  +FG+ G +  + I     T  +RG AFV   ++ DA+ A+
Sbjct: 107 SRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAI 166

Query: 75  DHLSGFNVANRYLIVLYYQQAKMSKK 100
               G  V  R + V + +   + K+
Sbjct: 167 RMFDGTTVGGRAIKVNFPEVPIVGKR 192


>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
           chr3:34381451-34378914 | 20130731
          Length = 291

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 4/79 (5%)

Query: 14  PPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTTKDT---RGTAFVVYEDIYDA 70
           PPE +  L+V N PF++ SE++  +FG+ G +    +   + T   RG  FV    + +A
Sbjct: 105 PPE-DAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEA 163

Query: 71  KTAVDHLSGFNVANRYLIV 89
           ++AV+  +G++   R L+V
Sbjct: 164 ESAVEKFNGYDYNGRSLVV 182


>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
           chr3:34381440-34379306 | 20130731
          Length = 271

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 4/79 (5%)

Query: 14  PPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTTKDT---RGTAFVVYEDIYDA 70
           PPE +  L+V N PF++ SE++  +FG+ G +    +   + T   RG  FV    + +A
Sbjct: 105 PPE-DAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEA 163

Query: 71  KTAVDHLSGFNVANRYLIV 89
           ++AV+  +G++   R L+V
Sbjct: 164 ESAVEKFNGYDYNGRSLVV 182


>Medtr4g085540.1 | polyadenylate-binding protein | HC |
           chr4:33416965-33423437 | 20130731
          Length = 654

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 3/90 (3%)

Query: 17  VNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIG---TTKDTRGTAFVVYEDIYDAKTA 73
           V   LYV +L  N+T  ++YD+F + G +  +R+    TT+ + G  +V Y +  DA  A
Sbjct: 32  VTTSLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARA 91

Query: 74  VDHLSGFNVANRYLIVLYYQQAKMSKKFDQ 103
           +D L+   + NR + ++Y  +    +K  Q
Sbjct: 92  LDVLNFTPLNNRPIRIMYSHRDPSIRKSGQ 121


>Medtr7g096260.2 | multiple RNA-binding domain protein | HC |
           chr7:38600263-38612243 | 20130731
          Length = 723

 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 16/111 (14%)

Query: 18  NRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTTKDTRGTAFVVYEDIYDAKTAVDHL 77
           N VL  +NLP+  T  E+ ++FGK+G++ +I + +   TR  A V++ +  +AK A    
Sbjct: 379 NHVLLAKNLPYGATENELAEMFGKFGSLDKIILPS---TRTLALVIFLEPAEAKAA---F 432

Query: 78  SGFNVANRYLIVLYYQQAK---MSKKFDQKKKEDEIARMQEKYGVSTKDVK 125
            G          LY + A    +S K   + K DE+       G+S KDVK
Sbjct: 433 GGLAYKKYRAAPLYLEWAPSDVLSPK--SQSKNDEV-----NNGISEKDVK 476


>Medtr7g112760.1 | pre-mRNA-splicing factor SF2-like protein | HC
          | chr7:46405226-46398545 | 20130731
          Length = 292

 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 36/63 (57%)

Query: 18 NRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTTKDTRGTAFVVYEDIYDAKTAVDHL 77
          +R +YV NLP +I   E+ D+F K+G I  I +       G AFV +ED  DA+ A+ + 
Sbjct: 6  SRTIYVGNLPGDIRLREVEDLFYKFGPIVDIELKIPPRPPGYAFVEFEDARDAEDAIRYR 65

Query: 78 SGF 80
           G+
Sbjct: 66 DGY 68


>Medtr7g112760.2 | pre-mRNA-splicing factor SF2-like protein | HC
          | chr7:46405206-46401029 | 20130731
          Length = 252

 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 36/63 (57%)

Query: 18 NRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTTKDTRGTAFVVYEDIYDAKTAVDHL 77
          +R +YV NLP +I   E+ D+F K+G I  I +       G AFV +ED  DA+ A+ + 
Sbjct: 6  SRTIYVGNLPGDIRLREVEDLFYKFGPIVDIELKIPPRPPGYAFVEFEDARDAEDAIRYR 65

Query: 78 SGF 80
           G+
Sbjct: 66 DGY 68


>Medtr5g070100.1 | RNA recognition motif (RRM) containing protein |
           HC | chr5:29707444-29702897 | 20130731
          Length = 393

 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 5/75 (6%)

Query: 21  LYVRNLPFNITSEEMYDIFGKYGAIRQIRI----GTTKDTRGTAFVVYEDIYDAKTAVDH 76
           ++V  +PF+ T  ++  +F +YG +  I +    GT K ++G AF+ YED      AVD+
Sbjct: 38  VFVGGIPFDFTEGDVIAVFAQYGEVVDINLVRDKGTGK-SKGFAFIAYEDQRSTNLAVDN 96

Query: 77  LSGFNVANRYLIVLY 91
           L+G  V+ R + V +
Sbjct: 97  LNGAQVSGRIIRVDH 111