Miyakogusa Predicted Gene

Lj2g3v3022790.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3022790.1 Non Characterized Hit- tr|Q2QQL7|Q2QQL7_ORYSJ
Retrotransposon protein, putative, Ty1-copia subclass
,49.41,2e-19,PREDICTED PROTEIN (FRAGMENT),NULL; GAG-POL-RELATED
RETROTRANSPOSON,NULL,CUFF.39604.1
         (87 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g075170.1 | hypothetical protein | LC | chr8:31775774-3177...    53   5e-08

>Medtr8g075170.1 | hypothetical protein | LC |
          chr8:31775774-31775601 | 20130731
          Length = 57

 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/48 (56%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 8  EAFATAVFLINRLPSQILQNQSPYDLLFHKTPDYKAMKTFGCACYPCL 55
          EAF   V++INR P+ ILQN S    LF++ PDY A K FGCA Y CL
Sbjct: 11 EAFKIVVYIINRSPNLILQN-SCLQTLFNQQPDYHAFKVFGCASYHCL 57