Miyakogusa Predicted Gene

Lj2g3v3022770.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3022770.1 Non Characterized Hit- tr|F6HA93|F6HA93_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,44.83,3e-19,seg,NULL; AvrRpt-cleavage,Pathogenic type III effector
avirulence factor Avr cleavage site,CUFF.39625.1
         (116 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g089290.1 | RPM1-interacting protein 4 (RIN4) family prote...   113   3e-26
Medtr3g436750.1 | RPM1-interacting protein 4 (RIN4) family prote...    67   3e-12
Medtr3g094970.1 | pathogenic type III effector avirulence factor...    52   1e-07
Medtr8g091930.1 | RPM1-interacting protein 4 (RIN4) family prote...    52   2e-07
Medtr8g091930.2 | RPM1-interacting protein 4 (RIN4) family prote...    51   2e-07
Medtr8g091930.4 | RPM1-interacting protein 4 (RIN4) family prote...    50   5e-07
Medtr8g091930.3 | RPM1-interacting protein 4 (RIN4) family prote...    50   6e-07

>Medtr5g089290.1 | RPM1-interacting protein 4 (RIN4) family protein
           | HC | chr5:38802586-38800831 | 20130731
          Length = 130

 Score =  113 bits (283), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 60/130 (46%), Positives = 72/130 (55%), Gaps = 14/130 (10%)

Query: 1   MEQVQ--KKHGVTTVPQFGGWDQSAPGATDYSMVFTQARAKKKQQKIDLTDIKRHSLGNE 58
           M+Q Q  KKH  ++VPQFG WDQ   GAT+YSMVFTQARA KKQQK DLT++KR S+G E
Sbjct: 1   MDQKQGMKKHAKSSVPQFGAWDQKTMGATNYSMVFTQARANKKQQKTDLTEVKRSSIGTE 60

Query: 59  REFINA------------NRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEPIVMGKKRI 106
            E + A            +                              E+P+VMGK+RI
Sbjct: 61  EELVKAINHRHGHPPQGYHAQPAHGRAPPAQVQANAQVHANANANAQVQEDPVVMGKRRI 120

Query: 107 LTYINCCIRP 116
           LTYINCCIRP
Sbjct: 121 LTYINCCIRP 130


>Medtr3g436750.1 | RPM1-interacting protein 4 (RIN4) family protein,
           putative | HC | chr3:12366348-12370564 | 20130731
          Length = 150

 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 52/107 (48%), Gaps = 11/107 (10%)

Query: 12  TVPQFGGWDQSAPGA-TDYSMVFTQARAKKKQQKIDLTDIKRH-SLGNEREFINANRXXX 69
           +VPQFGGW+  + G  TDYSMVF  AR  KK  K D +++KR  S+ NER   NA     
Sbjct: 53  SVPQFGGWENKSKGVPTDYSMVFNIARENKKNHKTDWSEVKRRLSISNERVATNATN--- 109

Query: 70  XXXXXXXXXXXXXXXXXXXXXXXXXXEEPIVMGKKRILTYINCCIRP 116
                                     + P VMG+   L+Y+NCC+RP
Sbjct: 110 -----HRHGHGHGHGFGHNHHHHSHADSP-VMGRSNALSYMNCCLRP 150


>Medtr3g094970.1 | pathogenic type III effector avirulence factor
           Avr AvrRpt-cleavage: cleavage site protein | HC |
           chr3:43352349-43349559 | 20130731
          Length = 100

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 50/116 (43%), Gaps = 18/116 (15%)

Query: 1   MEQVQKKHGV-TTVPQFGGWDQSAPGATDYSMVFTQARAKKKQQKIDLTDIKRHSLGNER 59
           MEQ ++K     +VPQFG WDQ  P   DYSM F++ R  +KQ K   T+  R SLGNE 
Sbjct: 1   MEQNKEKIAPWLSVPQFGEWDQKGP-LPDYSMDFSKIREMRKQNK---TNASRASLGNEE 56

Query: 60  EFINANRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEPIVMGKKRILTYINCCIR 115
           EF    +                                  + ++  ++Y NCCI+
Sbjct: 57  EFAAPTQKNVKADHSEPQHPHYHKTNS-------------AVRRRSFMSYFNCCIK 99


>Medtr8g091930.1 | RPM1-interacting protein 4 (RIN4) family protein
           | HC | chr8:38360853-38359248 | 20130731
          Length = 110

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 47/111 (42%), Gaps = 9/111 (8%)

Query: 5   QKKHGVTTVPQFGGWDQSAPGATDYSMVFTQARAKKKQQKIDLTDIKRHSLGNEREFINA 64
           +K  G  +VPQFG WDQ      DYS+ F++ R  +KQ K   T+I R SLGN+ EF   
Sbjct: 8   EKNGGWLSVPQFGDWDQKG-QVPDYSLDFSKIRETRKQNK---TNISRASLGNDEEF--- 60

Query: 65  NRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEPIVMGKKRILTYINCCIR 115
           N                                P    +K  L+Y NCC++
Sbjct: 61  NIDSTSSSTSNTVSSIEQQQQQHTPRYHHQTHSPTT--RKSFLSYFNCCVK 109


>Medtr8g091930.2 | RPM1-interacting protein 4 (RIN4) family protein
           | HC | chr8:38360853-38359248 | 20130731
          Length = 109

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 49/115 (42%), Gaps = 9/115 (7%)

Query: 1   MEQVQKKHGVTTVPQFGGWDQSAPGATDYSMVFTQARAKKKQQKIDLTDIKRHSLGNERE 60
           M+  ++  G  +VPQFG WDQ      DYS+ F++ R  +KQ K   T+I R SLGN+ E
Sbjct: 3   MDARKENGGWLSVPQFGDWDQKG-QVPDYSLDFSKIRETRKQNK---TNISRASLGNDEE 58

Query: 61  FINANRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEPIVMGKKRILTYINCCIR 115
           F   N                                P    +K  L+Y NCC++
Sbjct: 59  F---NIDSTSSSTSNTVSSIEQQQQQHTPRYHHQTHSPTT--RKSFLSYFNCCVK 108


>Medtr8g091930.4 | RPM1-interacting protein 4 (RIN4) family
          protein | HC | chr8:38360853-38359248 | 20130731
          Length = 100

 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 4/57 (7%)

Query: 5  QKKHGVTTVPQFGGWDQSAPGATDYSMVFTQARAKKKQQKIDLTDIKRHSLGNEREF 61
          +K  G  +VPQFG WDQ      DYS+ F++ R  +KQ K   T+I R SLGN+ EF
Sbjct: 8  EKNGGWLSVPQFGDWDQKG-QVPDYSLDFSKIRETRKQNK---TNISRASLGNDEEF 60


>Medtr8g091930.3 | RPM1-interacting protein 4 (RIN4) family
          protein | HC | chr8:38360853-38359248 | 20130731
          Length = 99

 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 4/61 (6%)

Query: 1  MEQVQKKHGVTTVPQFGGWDQSAPGATDYSMVFTQARAKKKQQKIDLTDIKRHSLGNERE 60
          M+  ++  G  +VPQFG WDQ      DYS+ F++ R  +KQ K   T+I R SLGN+ E
Sbjct: 3  MDARKENGGWLSVPQFGDWDQKG-QVPDYSLDFSKIRETRKQNK---TNISRASLGNDEE 58

Query: 61 F 61
          F
Sbjct: 59 F 59