Miyakogusa Predicted Gene

Lj2g3v3018620.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3018620.1 tr|B9HNI3|B9HNI3_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_767870 PE=4
SV=1,29.55,1e-16,seg,NULL; DUF1645,Protein of unknown function
DUF1645,CUFF.39728.1
         (375 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g089100.1 | hypothetical protein | HC | chr5:38724245-3872...   308   4e-84

>Medtr5g089100.1 | hypothetical protein | HC |
           chr5:38724245-38725508 | 20130731
          Length = 396

 Score =  308 bits (790), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 179/398 (44%), Positives = 229/398 (57%), Gaps = 30/398 (7%)

Query: 1   MMDISFPNELGKMSASSCSQE--MCFYXXXXXXXXXXXXXXCGFHTCPTTPRAYEEDANS 58
           MMDISF NEL  M+ SSC+++  + FY               G  T PTTPR++E DANS
Sbjct: 1   MMDISFSNELCYMNGSSCNKDKDLFFYSAPTSPSRLKLIEHDGSRTGPTTPRSHE-DANS 59

Query: 59  NLDDFEFETGHSFNLSHMVIETNQKDVNTFHHQQRFCEDSMPAMAFADELFSNGRVXXXX 118
           NLD FEFET   FN S    +TN+KDVN F   QR CEDS+P MAFADELF +G+V    
Sbjct: 60  NLDRFEFETSRRFNHSEPRTKTNRKDVNAFEQHQRLCEDSLPTMAFADELFCDGKVIPMM 119

Query: 119 XXXXXXXXXXQNGDGNMVSTQSSRMVSPRSPGLMLRLPFSRHSLW-DDEFDPFMEALXXX 177
                     QNGD    STQSSR  SP+SPG MLRLPF+R  LW +D+FDPF  A    
Sbjct: 120 PPLKLPPRLVQNGD----STQSSRATSPKSPGSMLRLPFAR--LWKNDDFDPFKVAFEKV 173

Query: 178 XXXXXXXXXXXXHGIRRTRSLSPLRGFNNKSEKHVGQSQSNQ-PKSHC------------ 224
                       +G+RRTRSLSPLR FN+K +KH G S+S++  +SHC            
Sbjct: 174 REEKRGKSKGREYGLRRTRSLSPLRVFNSKCDKHEGLSESHKHDQSHCCEKLPLMSFPEG 233

Query: 225 ---GEVQKEPFQQASRRVNLLSEPEGLVFTRQVRQMGEGNHRNF--EAQRISVSKLARET 279
               E+ +EP ++ S R N++SEP+GL F RQ RQ+   N  NF  E+++  VS +A+E 
Sbjct: 234 QMLRELLEEPMKEESERENMVSEPKGLAFARQTRQVEVANDTNFELESKKTLVSNVAKEI 293

Query: 280 KKDENQRGGFWTRNRXXXXXXXXXXXXXXXXXASSQHNIEDXXXXXXXXXXXXXXDIKSM 339
           KKDEN+RGGFW RN+                 AS+Q  +ED              D+KS+
Sbjct: 294 KKDENKRGGFWKRNKKIESIKKFFFGNSKKGKASAQQKLEDKKTELEKHSLVKKPDMKSV 353

Query: 340 --TQLPQWNKDEATAELSKMRLVCHRPVPRFFLCLGYE 375
             T+   W+KD+ + E +KMRLVC RP+P+ FLCLGYE
Sbjct: 354 HSTESTTWSKDDVSGEFTKMRLVCQRPLPKSFLCLGYE 391