Miyakogusa Predicted Gene

Lj2g3v3018610.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3018610.1 CUFF.39727.1
         (88 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g089030.1 | hypothetical protein | HC | chr5:38683327-3868...   122   6e-29
Medtr5g089030.2 | hypothetical protein | HC | chr5:38683374-3868...   111   1e-25

>Medtr5g089030.1 | hypothetical protein | HC |
          chr5:38683327-38688050 | 20130731
          Length = 120

 Score =  122 bits (307), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 61/94 (64%), Positives = 70/94 (74%), Gaps = 6/94 (6%)

Query: 1  MDESEFQRLLQLFPVVRSRDYCAETX------XXXXXXXXXAQDEELKEWQDAWDERDRD 54
          MDE+EFQRLLQLFP VRSRDY  E+                +  EEL EW DAW+E+D+D
Sbjct: 1  MDEAEFQRLLQLFPSVRSRDYIEESSSSSSSRQLTPGSGSRSAQEELNEWHDAWNEKDKD 60

Query: 55 FENRGITKHDSFWSKLKSEAARKVGTEEAERFCK 88
          FEN+GI KHDSFW+KLKSEAA+KVGTEEAERFCK
Sbjct: 61 FENQGINKHDSFWNKLKSEAAKKVGTEEAERFCK 94


>Medtr5g089030.2 | hypothetical protein | HC |
          chr5:38683374-38687971 | 20130731
          Length = 113

 Score =  111 bits (278), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 57/88 (64%), Positives = 65/88 (73%), Gaps = 1/88 (1%)

Query: 1  MDESEFQRLLQLFPVVRSRDYCAETXXXXXXXXXXAQDEELKEWQDAWDERDRDFENRGI 60
          MDE+EFQRLLQLFP   S    +            AQ EEL EW DAW+E+D+DFEN+GI
Sbjct: 1  MDEAEFQRLLQLFPSEESSSSSSSRQLTPGSGSRSAQ-EELNEWHDAWNEKDKDFENQGI 59

Query: 61 TKHDSFWSKLKSEAARKVGTEEAERFCK 88
           KHDSFW+KLKSEAA+KVGTEEAERFCK
Sbjct: 60 NKHDSFWNKLKSEAAKKVGTEEAERFCK 87