Miyakogusa Predicted Gene
- Lj2g3v3007580.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v3007580.1 Non Characterized Hit- tr|G7L1E6|G7L1E6_MEDTR
Putative uncharacterized protein OS=Medicago truncatul,38.46,7e-19,no
description,Cupredoxin; Cupredoxins,Cupredoxin;
PHYTOCYANIN,Plastocyanin-like; seg,NULL; Cu_bind_,CUFF.39595.1
(245 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g088990.1 | plastocyanin-like domain protein | HC | chr5:3... 294 5e-80
Medtr7g075770.1 | plastocyanin-like domain protein | HC | chr7:2... 97 2e-20
Medtr3g099540.2 | blue copper-like protein | HC | chr3:45635266-... 50 2e-06
Medtr3g099540.1 | blue copper-like protein | HC | chr3:45635266-... 50 2e-06
Medtr3g099580.1 | plastocyanin-like domain protein | HC | chr3:4... 49 4e-06
Medtr2g088990.1 | plastocyanin-like domain protein | HC | chr2:3... 49 4e-06
>Medtr5g088990.1 | plastocyanin-like domain protein | HC |
chr5:38643152-38645471 | 20130731
Length = 240
Score = 294 bits (752), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 145/220 (65%), Positives = 160/220 (72%), Gaps = 2/220 (0%)
Query: 26 CFSGSVEAYKNYTVGDSLGWFDNLEKPHVNYQKWVANKEFSLGDFLIFNTDTNHTVVQTY 85
CF GSV AYKNYTVGDSLGWFDNLEKP VNYQKWVA K+FSLGDFLIFNTD NH++VQTY
Sbjct: 23 CFLGSVGAYKNYTVGDSLGWFDNLEKPTVNYQKWVAKKQFSLGDFLIFNTDNNHSLVQTY 82
Query: 86 NFTTYKQCDYNDAQDKDTTQWSSSDPSNTEIHPVTAAVPLVKEGMNYFFSSDYDGDQCKN 145
NFTTYKQCDY+DAQDKDT QWSS DPSNT+IHPVT AVPL+KEG YFFSSDYDG+QCKN
Sbjct: 83 NFTTYKQCDYDDAQDKDTIQWSSVDPSNTDIHPVTVAVPLLKEGATYFFSSDYDGEQCKN 142
Query: 146 GQHFKINVTYGQGLPKSLRXXXXXXXXXXXXXXGDDDAAPDTIVPSNFSHPXXXXXXXXX 205
GQHFKINVT+GQGLPKSL+ GDD++APDT VPSNF++P
Sbjct: 143 GQHFKINVTHGQGLPKSLQKPSEDSPSPASPISGDDESAPDTNVPSNFNNPKEDSDDEKT 202
Query: 206 XXXXXXXXXXXXXXXXXXMYAQLHNKLYVALILLGIIFMF 245
Y + HNKLY L+LLG F F
Sbjct: 203 SDKDKDKEESSSLSMLK--YVKFHNKLYGCLVLLGTFFFF 240
>Medtr7g075770.1 | plastocyanin-like domain protein | HC |
chr7:28422660-28423711 | 20130731
Length = 208
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 76/138 (55%), Gaps = 5/138 (3%)
Query: 24 IFCFSGSVEAYKNYTVGDSLGWFDN--LEKPHVNYQKWVANKEFSLGDFLIFNTDTNHTV 81
I + + YKN+TVG + GW N NY W +++ F+LGD+LIFNT++N +V
Sbjct: 14 IISATTAATGYKNHTVGGTSGWLFNSSTNTSATNYSSWASSQSFNLGDYLIFNTNSNQSV 73
Query: 82 VQTYNFTTYKQCDYNDAQDKDTTQWSSSDPSNTEIHPVTAAVPLVKEGMNYFFSSDYDGD 141
+ TYN T Y C A D D + + +N +T VPL G NYFFS +G
Sbjct: 74 ILTYNKTAYTSC---TADDSDVGTFIYNGGTNNFSETLTIPVPLTIVGPNYFFSDTNEGV 130
Query: 142 QCKNGQHFKINVTYGQGL 159
QC++G F+I+V G GL
Sbjct: 131 QCQHGLAFQIDVQRGIGL 148
>Medtr3g099540.2 | blue copper-like protein | HC |
chr3:45635266-45634120 | 20130731
Length = 132
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 22/122 (18%)
Query: 37 YTVGDSLGWFDNLEKPHVNYQKWVANKEFSLGDFLIFNTDTNHTVVQTYNFTTYKQCDYN 96
YTVGDSLGW + V Y KW + K F +GD L+F HTV +
Sbjct: 27 YTVGDSLGW-----QIGVEYSKWTSEKTFVVGDSLVFLYGAIHTV--------------D 67
Query: 97 DAQDKDTTQWSSSDPSNTEIHPVTAAVPLVKEGMNYFFSSDYDGDQCKNGQHFKINVTYG 156
+ D ++ +P +++ T + L G +YF S+ + GD C +G + V G
Sbjct: 68 EVAASDYISCTTGNPISSDNSGET-TIALKTAGTHYFISATF-GD-CSSGMRLAVKVEAG 124
Query: 157 QG 158
Sbjct: 125 SA 126
>Medtr3g099540.1 | blue copper-like protein | HC |
chr3:45635266-45634343 | 20130731
Length = 132
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 22/122 (18%)
Query: 37 YTVGDSLGWFDNLEKPHVNYQKWVANKEFSLGDFLIFNTDTNHTVVQTYNFTTYKQCDYN 96
YTVGDSLGW + V Y KW + K F +GD L+F HTV +
Sbjct: 27 YTVGDSLGW-----QIGVEYSKWTSEKTFVVGDSLVFLYGAIHTV--------------D 67
Query: 97 DAQDKDTTQWSSSDPSNTEIHPVTAAVPLVKEGMNYFFSSDYDGDQCKNGQHFKINVTYG 156
+ D ++ +P +++ T + L G +YF S+ + GD C +G + V G
Sbjct: 68 EVAASDYISCTTGNPISSDNSGET-TIALKTAGTHYFISATF-GD-CSSGMRLAVKVEAG 124
Query: 157 QG 158
Sbjct: 125 SA 126
>Medtr3g099580.1 | plastocyanin-like domain protein | HC |
chr3:45650942-45649884 | 20130731
Length = 186
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 22/117 (18%)
Query: 37 YTVGDSLGWFDNLEKPHVNYQKWVANKEFSLGDFLIFNTDTNHTVVQTYNFTTYKQCDYN 96
+TVGD GW + Y W ++K F++GD L+FN HTV + K+ DY
Sbjct: 26 HTVGDKSGWAIGSD-----YNTWASDKTFAVGDSLVFNYGAGHTVDEV------KESDYK 74
Query: 97 DAQDKDTTQWSSSDPSNTEIHPVTAAVPLVKEGMNYFFSSDYDGDQCKNGQHFKINV 153
++ SS P+ +PL K G +YF + C G + V
Sbjct: 75 SCTTGNSISTDSSGPTT---------IPLKKAGTHYFICAVP--GHCTGGMKLSVKV 120
>Medtr2g088990.1 | plastocyanin-like domain protein | HC |
chr2:37537716-37538597 | 20130731
Length = 228
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 21/127 (16%)
Query: 36 NYTVGDSLGWFDNLEKPHVNYQKWVANKEFSLGDFLIFNTDTNHTVVQTYNFTTYKQCDY 95
N+ VG +G +D + N Q W ++++FS+GD LIF NH VV+ + DY
Sbjct: 24 NHIVGGPIGGWDT----NSNLQSWTSSQQFSVGDNLIFQYPPNHDVVEV------TKADY 73
Query: 96 NDAQDKDTTQWSSSDPSNTEIHPVTAAVPLVKEGMNYFFSSDYDGDQCKNGQHFKINVTY 155
+ Q + Q S +D + + +PL G YF C G +I+
Sbjct: 74 DSCQQTNPIQ-SYNDGATS--------IPLTSTGKRYFICGTI--GHCSQGMKVEIDTLA 122
Query: 156 GQGLPKS 162
Q P S
Sbjct: 123 AQVSPAS 129