Miyakogusa Predicted Gene

Lj2g3v3007500.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3007500.1 CUFF.39589.1
         (584 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g088780.1 | ATP synthase regulation protein NCA2 | HC | ch...   838   0.0  

>Medtr5g088780.1 | ATP synthase regulation protein NCA2 | HC |
           chr5:38561571-38571851 | 20130731
          Length = 589

 Score =  838 bits (2165), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/589 (71%), Positives = 476/589 (80%), Gaps = 9/589 (1%)

Query: 1   MAETESSSSSDGDRKLIVSHLYSNYIRNRLKDLHRFSPFNLLSNLAARFRLSPRRECFPL 60
           MA   S + S  +R L  S  YS+++RNR    H FSP    S+L + FR S RREC PL
Sbjct: 1   MAVVPSETESSLNRNL-PSLFYSDFLRNRFSAFH-FSPSTFFSSLTSAFRSSRRRECLPL 58

Query: 61  PLPYNLLDSSTTMTESSRAHVVLEDVLERVLMNLHLIEKNLQFWQSRAEGSDARKAYFMV 120
           PLP N LDSS   + +SR H VLEDVLERVL N+H I+KNLQFWQS A+ SD RKAYFMV
Sbjct: 59  PLPSNYLDSSMNYSNASRVHAVLEDVLERVLTNMHRIQKNLQFWQSIAQKSDNRKAYFMV 118

Query: 121 FERGPRAFIDETVRFLRC-VAQSSSSQNLCQFASDYISERKTVLDSLRFSLATFLAQVYV 179
           FERGPRAFI ETV+ LR   AQ SS QN+CQ ASDY++ER TVL  LR SLA FLAQ+YV
Sbjct: 119 FERGPRAFIGETVKLLRGRAAQDSSLQNICQSASDYVNERVTVLSFLRCSLAIFLAQIYV 178

Query: 180 EVDKIRKELRTDPENRLPSLLATINDLFSTLEASM------RQSDYSMDGSHSTPLLFEK 233
           EVDK+ +EL TDPE++LPSLL TIN+LFSTLEAS+      RQSD S+DG++S PLLFEK
Sbjct: 179 EVDKVGEELITDPEHKLPSLLVTINELFSTLEASIGHLHAVRQSDSSVDGTYSIPLLFEK 238

Query: 234 LPEINPESSQSTDCEIKDAINSVYQNLDKLDSYISFLVIKHRKPKKITQYWIRYTCGAVG 293
           LPEIN + SQ TDCEI+DAI+SVYQNLDKL+SYI  LV+KHRKPK ITQ+W+ Y CGAVG
Sbjct: 239 LPEINQDGSQWTDCEIRDAISSVYQNLDKLESYICSLVVKHRKPKNITQHWVHYACGAVG 298

Query: 294 LSVCSIWLLRHSSLMGSSDLDNWIKEAKDSTVSFFKDRVEKPILSIRDELFETFRKRHHG 353
           LSVCS+WLLRHSSLMGSSDLDNWI+EAKDSTV FF D VE+PILSIRDELFETFRKRH G
Sbjct: 299 LSVCSLWLLRHSSLMGSSDLDNWIQEAKDSTVGFFTDHVEQPILSIRDELFETFRKRHQG 358

Query: 354 IMDLEEVQLTFNSLHRMLLAFSEQTKGEKFPANASDQEMLAIVMDRYEKELVHPIQNLVS 413
           IMD EEV+LT NSLHRMLLAFSEQTKG+K P NASDQEML IVMDRYEKEL+HPIQNL++
Sbjct: 359 IMDFEEVRLTSNSLHRMLLAFSEQTKGQKSPVNASDQEMLEIVMDRYEKELMHPIQNLLN 418

Query: 414 GELARAMLIQVQKLKLDIETAMLELNQILRANEINXXXXXXXXXXXXXXXXIMLVRAWFK 473
           GELARAMLIQVQKLKLDIETAMLELNQILRANEIN                IMLVRAWFK
Sbjct: 419 GELARAMLIQVQKLKLDIETAMLELNQILRANEINFAVLAALPAFFISLLLIMLVRAWFK 478

Query: 474 QDTKAEGRGRAAQKMRRLLVVEVEERIIQYQNYVNEGLERDAQCMYGMLLYSLYRLYHSV 533
           QDTKAEGRGR A+  RRLLVVEVE RI+Q+Q YV +GLERDA  M G++LYSL RLY SV
Sbjct: 479 QDTKAEGRGRVARIQRRLLVVEVERRIMQHQIYVEQGLERDAHYMLGLILYSLDRLYSSV 538

Query: 534 KRHPEDSGKWQRLRRDIIDLARPGLQTADKLYVTSRMERVYDCLLPILK 582
           KRH E SG+WQ LR+DIIDLARPGLQT+ KL VTSR+ +VYDCLLP+L+
Sbjct: 539 KRHAEASGEWQCLRQDIIDLARPGLQTSHKLAVTSRIIKVYDCLLPVLR 587