Miyakogusa Predicted Gene

Lj2g3v2972740.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2972740.2 Non Characterized Hit- tr|B6T0J3|B6T0J3_MAIZE
Putative uncharacterized protein OS=Zea mays PE=4
SV=1,80.7,2e-17,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.39556.2
         (161 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g087720.1 | plant/T10F18-100 protein | HC | chr5:38033138-...   231   2e-61

>Medtr5g087720.1 | plant/T10F18-100 protein | HC |
           chr5:38033138-38036827 | 20130731
          Length = 223

 Score =  231 bits (589), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 121/155 (78%), Positives = 127/155 (81%), Gaps = 2/155 (1%)

Query: 1   MANTIAGEETVHKLASLLLVFLGGSYVLLFFMGKGGHSHSHNQPMEKMAVAGLILVPALS 60
           MANTIAGEETVHKLASLLLVFLGG Y++LF MGKGGHSHSHNQPMEKMAVAGLILVPALS
Sbjct: 71  MANTIAGEETVHKLASLLLVFLGGMYIILFLMGKGGHSHSHNQPMEKMAVAGLILVPALS 130

Query: 61  PCATTLPVFLAVGSSSSMMVLAIIVLLFSTISVMTSLVALSFYGASQLKFHWVERYDKXX 120
           PCATTLPVFLAVG+SSSMMVLAIIVLL STISVMTSLVALSFYGASQLKFHWVERYDK  
Sbjct: 131 PCATTLPVFLAVGNSSSMMVLAIIVLLLSTISVMTSLVALSFYGASQLKFHWVERYDKLL 190

Query: 121 XXXXXXXXXXXXXIFXXXXXXXXXGKVGSVGEHIH 155
                        +F         G+V SVGEH+H
Sbjct: 191 VGSVLCLVGVLTLMF--HDHDHNHGEVASVGEHLH 223