Miyakogusa Predicted Gene

Lj2g3v2972740.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2972740.1 Non Characterized Hit- tr|B6T0J3|B6T0J3_MAIZE
Putative uncharacterized protein OS=Zea mays PE=4
SV=1,80.7,2e-17,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
seg,NULL,CUFF.39556.1
         (223 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g087720.1 | plant/T10F18-100 protein | HC | chr5:38033138-...   353   6e-98

>Medtr5g087720.1 | plant/T10F18-100 protein | HC |
           chr5:38033138-38036827 | 20130731
          Length = 223

 Score =  353 bits (906), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 185/223 (82%), Positives = 190/223 (85%), Gaps = 2/223 (0%)

Query: 1   MAGFTAEDLSTIGGIATVSILHSFIPTHWLPFSIVGRAQKWTLSRTLLVTALGAILHVIS 60
           M  FTAEDLSTIGGIATVSILHSFIPTHWLPFSIVGRAQKWTLSRTL VTA GAILHVIS
Sbjct: 1   MNSFTAEDLSTIGGIATVSILHSFIPTHWLPFSIVGRAQKWTLSRTLFVTAFGAILHVIS 60

Query: 61  TSLLGITAINMANTIAGEETVHKLASLLLVFLGGSYVLLFFMGKGGHSHSHNQPMEKMAV 120
           TSLLGITAI MANTIAGEETVHKLASLLLVFLGG Y++LF MGKGGHSHSHNQPMEKMAV
Sbjct: 61  TSLLGITAITMANTIAGEETVHKLASLLLVFLGGMYIILFLMGKGGHSHSHNQPMEKMAV 120

Query: 121 AGLILVPALSPCATTLPVFLAVGSSSSMMVLAIIVLLFSTISVMTSLVALSFYGASQLKF 180
           AGLILVPALSPCATTLPVFLAVG+SSSMMVLAIIVLL STISVMTSLVALSFYGASQLKF
Sbjct: 121 AGLILVPALSPCATTLPVFLAVGNSSSMMVLAIIVLLLSTISVMTSLVALSFYGASQLKF 180

Query: 181 HWVERYDKXXXXXXXXXXXXXXXIFXXXXXXXXXGKVGSVGEH 223
           HWVERYDK               +F         G+V SVGEH
Sbjct: 181 HWVERYDKLLVGSVLCLVGVLTLMF--HDHDHNHGEVASVGEH 221