Miyakogusa Predicted Gene

Lj2g3v2937480.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2937480.1 tr|I1JIP3|I1JIP3_SOYBN KRR1 small subunit
processome component OS=Glycine max PE=3 SV=1,87.3,0,Eukaryotic type
KH-domain (KH-domain type I),NULL; no description,NULL; HIV-1 REV
BINDING PROTEIN 2,,CUFF.39531.1
         (376 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g087520.2 | KRR1 small subunit processome component | HC |...   556   e-158
Medtr5g087520.1 | KRR1 small subunit processome component | HC |...   555   e-158
Medtr6g040240.1 | KRR1 small subunit processome component, putat...    91   1e-18

>Medtr5g087520.2 | KRR1 small subunit processome component | HC |
           chr5:37928131-37933383 | 20130731
          Length = 425

 Score =  556 bits (1433), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 270/336 (80%), Positives = 293/336 (87%)

Query: 36  NIDRWKVEKFDPSWNEGGMVEVSSFSTLFPQYREKYLQEAWPLVKSSLKEFGVSCELNLV 95
           NID WKVEKFDPSWNE GM+EVSSFSTLFPQYREKYLQEAWPLVKSSLKEFG+S ELNLV
Sbjct: 75  NIDHWKVEKFDPSWNESGMLEVSSFSTLFPQYREKYLQEAWPLVKSSLKEFGISAELNLV 134

Query: 96  EGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILDDEVQCDIIKISGMVRNKE 155
           EGSMTVSTTRKT+DPYIIVKARDLI+LLSRSVPAPQAIK+LDDE+QCDIIKISG+VRNKE
Sbjct: 135 EGSMTVSTTRKTKDPYIIVKARDLIRLLSRSVPAPQAIKVLDDEMQCDIIKISGLVRNKE 194

Query: 156 RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVSAMGSFKGLKQVRRIVEECMLNKLH 215
           RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVS MGS+KGLKQVRRIVEECMLNK+H
Sbjct: 195 RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVSVMGSYKGLKQVRRIVEECMLNKMH 254

Query: 216 PVYNIKILMMKKELEKDPALAQENWDRFLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXLS 275
           PVYNIKILMMKKELEKDPALAQENWDRFLP                             S
Sbjct: 255 PVYNIKILMMKKELEKDPALAQENWDRFLPKFNKKNVKQKKVNAKPKKPYTPFPPPQQPS 314

Query: 276 KEDEQLLTGEYFMSDKRKSAKKWQERQEKQAEKTAENKRKRDEAFIPPKEPAKPLDKSED 335
           K D QL TGEYF+SDK+KSAKKWQERQ +QAEKTAENKRKRDE+F+PPKEPA  +  SED
Sbjct: 315 KVDIQLETGEYFLSDKKKSAKKWQERQVQQAEKTAENKRKRDESFVPPKEPANLVGNSED 374

Query: 336 ANDNVADMAMSLKKKAKKFGERKSGENVDAEAYIMG 371
           A++NVA+MAMSLK+KA+KFG+RKS EN++AE YIMG
Sbjct: 375 ASNNVAEMAMSLKEKARKFGKRKSEENINAETYIMG 410


>Medtr5g087520.1 | KRR1 small subunit processome component | HC |
           chr5:37928131-37933383 | 20130731
          Length = 424

 Score =  555 bits (1430), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 270/336 (80%), Positives = 293/336 (87%)

Query: 36  NIDRWKVEKFDPSWNEGGMVEVSSFSTLFPQYREKYLQEAWPLVKSSLKEFGVSCELNLV 95
           NID WKVEKFDPSWNE GM+EVSSFSTLFPQYREKYLQEAWPLVKSSLKEFG+S ELNLV
Sbjct: 74  NIDHWKVEKFDPSWNESGMLEVSSFSTLFPQYREKYLQEAWPLVKSSLKEFGISAELNLV 133

Query: 96  EGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILDDEVQCDIIKISGMVRNKE 155
           EGSMTVSTTRKT+DPYIIVKARDLI+LLSRSVPAPQAIK+LDDE+QCDIIKISG+VRNKE
Sbjct: 134 EGSMTVSTTRKTKDPYIIVKARDLIRLLSRSVPAPQAIKVLDDEMQCDIIKISGLVRNKE 193

Query: 156 RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVSAMGSFKGLKQVRRIVEECMLNKLH 215
           RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVS MGS+KGLKQVRRIVEECMLNK+H
Sbjct: 194 RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVSVMGSYKGLKQVRRIVEECMLNKMH 253

Query: 216 PVYNIKILMMKKELEKDPALAQENWDRFLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXLS 275
           PVYNIKILMMKKELEKDPALAQENWDRFLP                             S
Sbjct: 254 PVYNIKILMMKKELEKDPALAQENWDRFLPKFNKKNVKQKKVNAKPKKPYTPFPPPQQPS 313

Query: 276 KEDEQLLTGEYFMSDKRKSAKKWQERQEKQAEKTAENKRKRDEAFIPPKEPAKPLDKSED 335
           K D QL TGEYF+SDK+KSAKKWQERQ +QAEKTAENKRKRDE+F+PPKEPA  +  SED
Sbjct: 314 KVDIQLETGEYFLSDKKKSAKKWQERQVQQAEKTAENKRKRDESFVPPKEPANLVGNSED 373

Query: 336 ANDNVADMAMSLKKKAKKFGERKSGENVDAEAYIMG 371
           A++NVA+MAMSLK+KA+KFG+RKS EN++AE YIMG
Sbjct: 374 ASNNVAEMAMSLKEKARKFGKRKSEENINAETYIMG 409


>Medtr6g040240.1 | KRR1 small subunit processome component, putative
           | HC | chr6:14432186-14431083 | 20130731
          Length = 90

 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 42/46 (91%), Positives = 44/46 (95%)

Query: 63  LFPQYREKYLQEAWPLVKSSLKEFGVSCELNLVEGSMTVSTTRKTR 108
            FPQYREKYLQEAWPLVKSSLKEFG+S ELNLVEGSMTVSTTRKT+
Sbjct: 32  FFPQYREKYLQEAWPLVKSSLKEFGISAELNLVEGSMTVSTTRKTK 77