Miyakogusa Predicted Gene

Lj2g3v2926410.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2926410.2 Non Characterized Hit- tr|F6HTF0|F6HTF0_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,63.16,8e-19,seg,NULL; coiled-coil,NULL; DUF2052,Protein of unknown
function DUF2052, coiled-coil,CUFF.39506.2
         (203 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g099190.1 | plant/K14A3-4 protein | HC | chr4:41098230-410...   222   1e-58
Medtr4g099190.3 | plant/K14A3-4 protein | HC | chr4:41098251-410...   222   2e-58
Medtr4g099190.2 | plant/K14A3-4 protein | HC | chr4:41098251-410...   132   2e-31

>Medtr4g099190.1 | plant/K14A3-4 protein | HC |
           chr4:41098230-41093551 | 20130731
          Length = 328

 Score =  222 bits (566), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 118/210 (56%), Positives = 136/210 (64%), Gaps = 10/210 (4%)

Query: 1   MGGRYFSEEAMREREPYLHHEYVGRFQDQSGRGMARPGERWSETLLRRCEEAELVAKIRG 60
           +GG YFSEEAMRERE YLH+EYVG+FQD+ GR MARPGERWS+TLLRRCEEA +VAKIRG
Sbjct: 122 VGGVYFSEEAMREREAYLHYEYVGKFQDRFGRRMARPGERWSDTLLRRCEEAVIVAKIRG 181

Query: 61  EQQRMGVAERDWVGNEGFQQQXXXXXXXXXXXXXXXXXXXXXXXGER-------TSGGVT 113
           EQ+R+GV   +W+GNEG Q++                        E+        S   T
Sbjct: 182 EQERIGVPRSEWIGNEGLQEEEEEEEEEEEEEEEDDDDVEKDETVEQIHVPQPDVSDNGT 241

Query: 114 ALPVERDMNQPDVTDNAPXXXXXXXXXXXXXXXXXXDRMNQFAYIMQQKFLLGEDHEYLD 173
           + P      + DVT+N                    DRMNQF YIMQQKFLLGEDHE++D
Sbjct: 242 SDPARM---RHDVTNNGTSDPARARQDPTLSSEELEDRMNQFTYIMQQKFLLGEDHEHVD 298

Query: 174 YAKIDNDETLDDHWQREANIDAEERYFADD 203
           Y KIDNDETLDDHWQREANIDAEERYFADD
Sbjct: 299 YTKIDNDETLDDHWQREANIDAEERYFADD 328


>Medtr4g099190.3 | plant/K14A3-4 protein | HC |
           chr4:41098251-41093493 | 20130731
          Length = 327

 Score =  222 bits (565), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 118/209 (56%), Positives = 135/209 (64%), Gaps = 9/209 (4%)

Query: 1   MGGRYFSEEAMREREPYLHHEYVGRFQDQSGRGMARPGERWSETLLRRCEEAELVAKIRG 60
           +GG YFSEEAMRERE YLH+EYVG+FQD+ GR MARPGERWS+TLLRRCEEA +VAKIRG
Sbjct: 122 VGGVYFSEEAMREREAYLHYEYVGKFQDRFGRRMARPGERWSDTLLRRCEEAVIVAKIRG 181

Query: 61  EQQRMGVAERDWVGNEGFQQQXXXXXXXXXXXXXXXXXXXXXXXGER------TSGGVTA 114
           EQ+R+GV   +W+GNEG Q++                        E        S   T+
Sbjct: 182 EQERIGVPRSEWIGNEGLQEEEEEEEEEEEEEEEDDDDVEKDETVEIHVPQPDVSDNGTS 241

Query: 115 LPVERDMNQPDVTDNAPXXXXXXXXXXXXXXXXXXDRMNQFAYIMQQKFLLGEDHEYLDY 174
            P      + DVT+N                    DRMNQF YIMQQKFLLGEDHE++DY
Sbjct: 242 DPARM---RHDVTNNGTSDPARARQDPTLSSEELEDRMNQFTYIMQQKFLLGEDHEHVDY 298

Query: 175 AKIDNDETLDDHWQREANIDAEERYFADD 203
            KIDNDETLDDHWQREANIDAEERYFADD
Sbjct: 299 TKIDNDETLDDHWQREANIDAEERYFADD 327


>Medtr4g099190.2 | plant/K14A3-4 protein | HC |
           chr4:41098251-41093510 | 20130731
          Length = 242

 Score =  132 bits (333), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 60/79 (75%), Positives = 70/79 (88%)

Query: 1   MGGRYFSEEAMREREPYLHHEYVGRFQDQSGRGMARPGERWSETLLRRCEEAELVAKIRG 60
           +GG YFSEEAMRERE YLH+EYVG+FQD+ GR MARPGERWS+TLLRRCEEA +VAKIRG
Sbjct: 122 VGGVYFSEEAMREREAYLHYEYVGKFQDRFGRRMARPGERWSDTLLRRCEEAVIVAKIRG 181

Query: 61  EQQRMGVAERDWVGNEGFQ 79
           EQ+R+GV   +W+GNEG Q
Sbjct: 182 EQERIGVPRSEWIGNEGLQ 200