Miyakogusa Predicted Gene

Lj2g3v2925140.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2925140.1 tr|I0Z9P9|I0Z9P9_9CHLO AAA-domain-containing
protein OS=Coccomyxa subellipsoidea C-169 PE=3 SV=1,33.33,2e-17,Cdc48
domain 2-like,NULL; ADC-like,Aspartate decarboxylase-like fold;
PEX-1N,Peroxisome biogenesis
f,NODE_52501_length_501_cov_49.079842.path1.1
         (163 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g083460.1 | peroxisome biogenesis factor 1 | HC | chr4:324...   228   2e-60

>Medtr4g083460.1 | peroxisome biogenesis factor 1 | HC |
           chr4:32473994-32487544 | 20130731
          Length = 1110

 Score =  228 bits (581), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 124/164 (75%), Positives = 134/164 (81%), Gaps = 6/164 (3%)

Query: 1   MELEVHAVGGIDNCFVSLPLPLIQTLQSTR-SSPLPHILALELRSLTHPPHSWFLAWSGA 59
           ME  V AVG IDNCFVSLPLPLIQTLQS R SS LP ILALELRS +H P SWF+AWSGA
Sbjct: 1   MEFTVEAVGNIDNCFVSLPLPLIQTLQSIRDSSLLPPILALELRSPSHSPLSWFVAWSGA 60

Query: 60  TXXXXXXXXXXAIEVSQQFAECVSLPNHAAVQVKVASNVPHASLVTIEPDTEDDWEILEL 119
           T           I++SQQFAEC+SLP H+ +QVKVASNVPHAS V+IEPDTEDDWEILEL
Sbjct: 61  TSSSSS-----TIQISQQFAECISLPIHSPIQVKVASNVPHASSVSIEPDTEDDWEILEL 115

Query: 120 NSEQAEAAILNQIRIVHEGMRFPLWLNGHTVITFHVASVFPKNA 163
           NS+QAE  ILNQIRIVHEG+RFPL LN HTVITFHV SVFPKNA
Sbjct: 116 NSQQAEDQILNQIRIVHEGLRFPLRLNHHTVITFHVVSVFPKNA 159