Miyakogusa Predicted Gene

Lj2g3v2925120.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2925120.1 Non Characterized Hit- tr|I1KMB5|I1KMB5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.35863
PE,93.94,0,RNA-binding domain, RBD,NULL; DNA-DAMAGE REPAIR PROTEIN
DRT111,NULL; no
description,Nucleotide-bindi,
NODE_53912_length_841_cov_97.587395.path1.1
         (162 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g083380.1 | DNA-damage-repair/toleration protein DRT111 | ...   235   1e-62

>Medtr4g083380.1 | DNA-damage-repair/toleration protein DRT111 | HC
           | chr4:32450824-32455461 | 20130731
          Length = 390

 Score =  235 bits (600), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 121/164 (73%), Positives = 124/164 (75%), Gaps = 2/164 (1%)

Query: 1   MMAXXXXXXXXXXXXXXXXITTPLMAKKTDRRAGVIVNASDN--SKKVKSVNFNGVPTRV 58
           MMA                ITTPLMAKKTDRRAGVIVNASD+   KKVKSVN NGVPTRV
Sbjct: 227 MMAKMGWKQGQGLGKQEQGITTPLMAKKTDRRAGVIVNASDSKSDKKVKSVNINGVPTRV 286

Query: 59  LLLRNMXXXXXXXXXXXXXXXXXCAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEE 118
           LLLRNM                 CAKYGTVTRVLIFEITEPNFP DEAVRIFVQFERSEE
Sbjct: 287 LLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPTDEAVRIFVQFERSEE 346

Query: 119 TTKALIDLDGRFFGGRVVRATFYDEDKFGKNELAPMPGEIPGFT 162
           TTKAL+DLDGR+FGGR VRATFYDEDKF KNELAPMPGEIPGFT
Sbjct: 347 TTKALVDLDGRYFGGRTVRATFYDEDKFSKNELAPMPGEIPGFT 390