Miyakogusa Predicted Gene

Lj2g3v2904810.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2904810.1 tr|B0BLB9|B0BLB9_LOTJA CM0545.430.nc protein
OS=Lotus japonicus GN=CM0545.430.nc PE=4
SV=1,100,0,PTHR12555,Ubiquitin fusion degradation protein UFD1;
PTHR12555:SF10,NULL; UFD1,Ubiquitin fusion degr,CUFF.39468.1
         (570 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g086350.1 | ubiquitin fusion degradation protein (UFD1), p...   957   0.0  
Medtr8g105250.1 | ubiquitin fusion degradation 1 protein | HC | ...   109   6e-24
Medtr4g064300.1 | ubiquitin fusion degradation 1 protein | HC | ...   100   7e-21
Medtr4g064260.1 | ubiquitin fusion degradation 1 protein | HC | ...    99   9e-21
Medtr4g064330.1 | ubiquitin fusion degradation 1 protein | HC | ...    94   3e-19
Medtr3g111440.3 | TRAF-type zinc finger protein | HC | chr3:5207...    68   2e-11
Medtr3g111440.1 | TRAF-type zinc finger protein | HC | chr3:5207...    61   3e-09
Medtr3g111440.2 | TRAF-type zinc finger protein | HC | chr3:5207...    61   3e-09
Medtr5g066840.1 | TRAF-type zinc finger protein | HC | chr5:2823...    55   2e-07

>Medtr5g086350.1 | ubiquitin fusion degradation protein (UFD1),
           putative | HC | chr5:37321996-37327207 | 20130731
          Length = 571

 Score =  957 bits (2474), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/543 (83%), Positives = 492/543 (90%), Gaps = 1/543 (0%)

Query: 28  QKERKAKEDARKQREAIEAAQRSRRIDAAEAQLKAEQQMQESLIAGRGIVFYRLLEAVPF 87
           QKE+KAKE+AR QREAIEAAQRSRRIDAAEAQLKA+QQMQE+LI GRGIVFYRLLEAVP+
Sbjct: 28  QKEKKAKEEARIQREAIEAAQRSRRIDAAEAQLKADQQMQENLIVGRGIVFYRLLEAVPY 87

Query: 88  QGSGDKIKLPPSCFTDLSDNGALDKGPMYFQLSLVHVEGTSGIEGADKEKQGTTHSGVLE 147
           QGSGDKIKLPPSCFTDLSD+GALDKGPMYFQLSL H EG+S  +  DKEK GTTHSGVLE
Sbjct: 88  QGSGDKIKLPPSCFTDLSDHGALDKGPMYFQLSLTHKEGSSSTQDTDKEKMGTTHSGVLE 147

Query: 148 FTADEGSVGLPPHVWNNLFSEVSV-NSPLVEVRYVWLPKGTYAKLQPERAGFSDLPNHKA 206
           FTADEGSVGLPPHVWNNLFSE  +  SPL+EVRYVWLPKGTYAKLQPER GFSDLPNHKA
Sbjct: 148 FTADEGSVGLPPHVWNNLFSEGCIMESPLIEVRYVWLPKGTYAKLQPERGGFSDLPNHKA 207

Query: 207 ILETSLRQHATLSQGDILTVNYGELAYKLRVLELKPSTSVSVLETDIEVDIVDSDTSLEK 266
           ILETSLRQHATLSQGDI TVNYG+L +KLRVLELKPS+SVSVLETDIEVDIVD     E+
Sbjct: 208 ILETSLRQHATLSQGDIFTVNYGKLEHKLRVLELKPSSSVSVLETDIEVDIVDPIDFSEQ 267

Query: 267 TDQHVLIPIVFGMPQIGTVEEGKFVYYKFSIDNGTWEKISTGSSSIELKLESETDGGDTD 326
           TDQHVLIP VFG  Q GTV+EGKFVYYKFSIDNGTWE+IS+GSS IE+KLESET+ GDTD
Sbjct: 268 TDQHVLIPTVFGTSQTGTVDEGKFVYYKFSIDNGTWERISSGSSIIEVKLESETNEGDTD 327

Query: 327 LFISRHPLIFPTRHQHEWSSHDIGSKTLILSSKDKNLSAETYSVGIFGFRGIAKYKLSVM 386
           LFISRHPLIFPTRHQHEWSSHDIGSKTLILSSKDKNL + TYS+G+ GF+G+ KYKLSV+
Sbjct: 328 LFISRHPLIFPTRHQHEWSSHDIGSKTLILSSKDKNLGSGTYSIGVNGFKGLTKYKLSVL 387

Query: 387 IQDNLDQKLGQQXXXXXXXXXXXXXKCRNCKHYIPTRTIALHEAYCVRHNIVCQHVGCGV 446
           IQDN +QKLGQQ             +CRNCKHYIP+RTIALHEAYC RHN+ CQH GCGV
Sbjct: 388 IQDNFNQKLGQQASSSMSSMGLDTEQCRNCKHYIPSRTIALHEAYCSRHNVTCQHEGCGV 447

Query: 447 VLRIEESKNHVHCDRCGQAFQQVELEKHMKVFHEPLRCPCGIILEKEQMVEHQASVCPLR 506
           VLRIEESKNH+HC RCGQAFQQ ELEKHMKVFHEPL+CPCGI+LEKE+MVEHQASVCPLR
Sbjct: 448 VLRIEESKNHIHCGRCGQAFQQAELEKHMKVFHEPLQCPCGIVLEKEKMVEHQASVCPLR 507

Query: 507 LISCRFCGDMVQAGSSAMEIRDRMRGLSEHESVCGSRTAPCDSCGRSVMLKDMDIHQVAV 566
           LISCRFCGDMV AGSSAM++RDR+RGLSEHESVCGSRTAPCDSCGRSVMLK+MDIHQ+AV
Sbjct: 508 LISCRFCGDMVPAGSSAMDVRDRLRGLSEHESVCGSRTAPCDSCGRSVMLKEMDIHQIAV 567

Query: 567 HQK 569
           HQK
Sbjct: 568 HQK 570


>Medtr8g105250.1 | ubiquitin fusion degradation 1 protein | HC |
           chr8:44389603-44394513 | 20130731
          Length = 320

 Score =  109 bits (273), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 69/172 (40%), Positives = 95/172 (55%), Gaps = 24/172 (13%)

Query: 90  SGDKIKLPPSCFTDLSDNGALDKGPMYFQLSLVHVEGTSGIEGADKEKQGTTHSGVLEFT 149
           SGDKI +PPS         ALD+      L+ +H++     E  +   +  +H GVLEF 
Sbjct: 32  SGDKIIMPPS---------ALDR------LASLHIDYPMLFELRNAAAERVSHCGVLEFI 76

Query: 150 ADEGSVGLPPHVW---NNLFSEVSVNSPLVEVRYVWLPKGTYAKLQPERAGFSDLPNHKA 206
           A+EG + +P   W   N L  E  V    V V+ V LPKGTY KLQP    F D+ N KA
Sbjct: 77  AEEGMIYMP--YWMMENMLLQEGDV----VRVKNVTLPKGTYVKLQPHTKDFLDISNPKA 130

Query: 207 ILETSLRQHATLSQGDILTVNYGELAYKLRVLELKPSTSVSVLETDIEVDIV 258
           ILET+LR  + L+ GD + V Y    Y + ++E KP+ ++S++ETD EVD  
Sbjct: 131 ILETTLRNFSCLTTGDSIMVAYNNKKYYIDIVESKPANAISIIETDCEVDFA 182


>Medtr4g064300.1 | ubiquitin fusion degradation 1 protein | HC |
           chr4:23982259-23984943 | 20130731
          Length = 419

 Score = 99.8 bits (247), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 92/173 (53%), Gaps = 18/173 (10%)

Query: 86  PFQGSGDKIKLPPSCFTDLSDNGALDKGPMYFQLSLVHVEGTSGIEGADKEKQGTTHSGV 145
           P   +GDKI +P S    L+      + PM F+L     E T             TH GV
Sbjct: 138 PTLENGDKIIMPSSALDSLARLNI--EYPMLFELRNTSAERT-------------THCGV 182

Query: 146 LEFTADEGSVGLPPHVWNNLFSEVSVNSPLVEVRYVWLPKGTYAKLQPERAGFSDLPNHK 205
           LEFTADEG V LP  +  +LF +      +V ++   L KG + KLQP    F ++ + K
Sbjct: 183 LEFTADEGIVFLPNWMMEDLFLQ---EGNIVSLKSTSLVKGKFVKLQPHSKDFLEISDPK 239

Query: 206 AILETSLRQHATLSQGDILTVNYGELAYKLRVLELKPSTSVSVLETDIEVDIV 258
           A+LETSLR ++ L+ G  + + Y +  Y + V+E KPS ++S++ETD EVD  
Sbjct: 240 AMLETSLRSYSCLTTGRTIMIPYNKKKYYIDVVETKPSPAISIIETDCEVDFA 292


>Medtr4g064260.1 | ubiquitin fusion degradation 1 protein | HC |
           chr4:23964991-23968014 | 20130731
          Length = 389

 Score = 99.4 bits (246), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 63/173 (36%), Positives = 92/173 (53%), Gaps = 18/173 (10%)

Query: 86  PFQGSGDKIKLPPSCFTDLSDNGALDKGPMYFQLSLVHVEGTSGIEGADKEKQGTTHSGV 145
           P   +GDKI +P S         ALD+      L+ +++E     E  +   + TTH GV
Sbjct: 108 PILENGDKIIMPSS---------ALDR------LARLNIEYPMLFELRNTSAERTTHCGV 152

Query: 146 LEFTADEGSVGLPPHVWNNLFSEVSVNSPLVEVRYVWLPKGTYAKLQPERAGFSDLPNHK 205
           LEFTADEG V LP  +  ++  +      LV ++   L KG + K QP    F D+ N K
Sbjct: 153 LEFTADEGIVFLPNWMMEDMLLQ---EGDLVSLKSTSLEKGKFVKFQPHSKDFLDISNPK 209

Query: 206 AILETSLRQHATLSQGDILTVNYGELAYKLRVLELKPSTSVSVLETDIEVDIV 258
           A+LETSLR ++ L+ G  + + Y    Y + V+E KPS ++S++E D EVD  
Sbjct: 210 AMLETSLRSYSCLTTGRTIMIPYNNKKYYIDVVETKPSPAISIIEIDCEVDFA 262


>Medtr4g064330.1 | ubiquitin fusion degradation 1 protein | HC |
           chr4:23989050-23991607 | 20130731
          Length = 386

 Score = 94.4 bits (233), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 93/173 (53%), Gaps = 18/173 (10%)

Query: 86  PFQGSGDKIKLPPSCFTDLSDNGALDKGPMYFQLSLVHVEGTSGIEGADKEKQGTTHSGV 145
           P   +GDKI +P S         ALD+      L+ +++E     E  +   + TTH GV
Sbjct: 105 PTLENGDKIIMPSS---------ALDR------LARLNIEYPMLFELRNTSAERTTHCGV 149

Query: 146 LEFTADEGSVGLPPHVWNNLFSEVSVNSPLVEVRYVWLPKGTYAKLQPERAGFSDLPNHK 205
           LEFTADEG V LP  +  +L  +      +V ++   L KG   KLQP    F ++ + K
Sbjct: 150 LEFTADEGIVFLPNWMMEDLLLQ---EGNIVSLKSTSLVKGKCVKLQPHSKDFLEISDPK 206

Query: 206 AILETSLRQHATLSQGDILTVNYGELAYKLRVLELKPSTSVSVLETDIEVDIV 258
           A+LETSLR ++ L+ G  + + Y    Y + ++E KPS ++S++ETD EVD  
Sbjct: 207 AMLETSLRSYSCLTTGRTIMIPYNNKKYYIDIVETKPSPAISIIETDCEVDFA 259


>Medtr3g111440.3 | TRAF-type zinc finger protein | HC |
           chr3:52079851-52077503 | 20130731
          Length = 147

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 60/152 (39%), Gaps = 32/152 (21%)

Query: 413 CRNCKHYIPTRTIALHEAYCVRHNIVCQHVGCGVVLRIEESKNHVHCDRCGQAFQQVELE 472
           C +C   IP   I LH  +C R                    N   C  CG    ++  +
Sbjct: 12  CPHCDRAIPAANIDLHSVHCAR--------------------NLEKCKLCGDMVPKIHAQ 51

Query: 473 KHMKVFHEPLRCP-CGIILEKEQMVEHQASVCPLRLISCRFCGDMVQAGSSAMEIRDRMR 531
            H    H P+ C  C   +E+  +  H+   CP R+++C FC           E      
Sbjct: 52  DHYLNTHAPVACSLCSETMERNILYIHEGESCPQRIVTCEFC-----------EFPLPAI 100

Query: 532 GLSEHESVCGSRTAPCDSCGRSVMLKDMDIHQ 563
            L EH+ VCG+RT  CD C + V L++   H+
Sbjct: 101 DLPEHQEVCGNRTEMCDLCNKYVRLRERYNHE 132


>Medtr3g111440.1 | TRAF-type zinc finger protein | HC |
           chr3:52079851-52076347 | 20130731
          Length = 192

 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 61/152 (40%), Gaps = 32/152 (21%)

Query: 413 CRNCKHYIPTRTIALHEAYCVRHNIVCQHVGCGVVLRIEESKNHVHCDRCGQAFQQVELE 472
           C +C   IP   I LH  +C R                    N   C  CG    ++  +
Sbjct: 12  CPHCDRAIPAANIDLHSVHCAR--------------------NLEKCKLCGDMVPKIHAQ 51

Query: 473 KHMKVFHEPLRCP-CGIILEKEQMVEHQASVCPLRLISCRFCGDMVQAGSSAMEIRDRMR 531
            H    H P+ C  C   +E+  +  H+   CP R+++C FC   + A            
Sbjct: 52  DHYLNTHAPVACSLCSETMERNILYIHEGESCPQRIVTCEFCEFPLPAID---------- 101

Query: 532 GLSEHESVCGSRTAPCDSCGRSVMLKDMDIHQ 563
            L EH+ VCG+RT  CD C + V L++   H+
Sbjct: 102 -LPEHQEVCGNRTEMCDLCNKYVRLRERYNHE 132


>Medtr3g111440.2 | TRAF-type zinc finger protein | HC |
           chr3:52079851-52076347 | 20130731
          Length = 192

 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 61/152 (40%), Gaps = 32/152 (21%)

Query: 413 CRNCKHYIPTRTIALHEAYCVRHNIVCQHVGCGVVLRIEESKNHVHCDRCGQAFQQVELE 472
           C +C   IP   I LH  +C R                    N   C  CG    ++  +
Sbjct: 12  CPHCDRAIPAANIDLHSVHCAR--------------------NLEKCKLCGDMVPKIHAQ 51

Query: 473 KHMKVFHEPLRCP-CGIILEKEQMVEHQASVCPLRLISCRFCGDMVQAGSSAMEIRDRMR 531
            H    H P+ C  C   +E+  +  H+   CP R+++C FC   + A            
Sbjct: 52  DHYLNTHAPVACSLCSETMERNILYIHEGESCPQRIVTCEFCEFPLPAID---------- 101

Query: 532 GLSEHESVCGSRTAPCDSCGRSVMLKDMDIHQ 563
            L EH+ VCG+RT  CD C + V L++   H+
Sbjct: 102 -LPEHQEVCGNRTEMCDLCNKYVRLRERYNHE 132


>Medtr5g066840.1 | TRAF-type zinc finger protein | HC |
           chr5:28234444-28229391 | 20130731
          Length = 201

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 32/156 (20%)

Query: 413 CRNCKHYIPTRTIALHEAYCVRHNIVCQHVGCGVVLRIEESKNHVHCDRCGQAFQQVELE 472
           C +C   IP   + LH A+C R              ++++      C  CG    +   E
Sbjct: 12  CSHCDRAIPVANVDLHYAHCSR--------------KLQK------CKVCGDMVPRNNAE 51

Query: 473 KHMKVFHEPLRCP-CGIILEKEQMVEHQASVCPLRLISCRFCGDMVQAGSSAMEIRDRMR 531
            H    H P+ C  C   ++++ +  H    CP R+++C FC   + A            
Sbjct: 52  DHYLTTHAPISCSLCSETVDRDIIDIHTGENCPKRIVTCDFCEFPLPAID---------- 101

Query: 532 GLSEHESVCGSRTAPCDSCGRSVMLKDMDIHQVAVH 567
            L+EH+ VCG+RT  C  C + V L++   H+   +
Sbjct: 102 -LAEHQEVCGNRTELCHLCNKYVRLRERYNHEAGCN 136