Miyakogusa Predicted Gene

Lj2g3v2902390.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2902390.1 Non Characterized Hit- tr|J3MDU3|J3MDU3_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB06G2,34.78,1e-16,SUBFAMILY NOT NAMED,NULL; C1ORF73 PROTEIN,NULL;
ARM repeat,Armadillo-type fold,CUFF.39426.1
         (355 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g078330.2 | integrator complex subunit 7 | HC | chr4:30179...   579   e-165
Medtr4g078330.1 | integrator complex subunit 7 | HC | chr4:30179...   579   e-165
Medtr4g078330.4 | integrator complex subunit 7 | HC | chr4:30179...   579   e-165
Medtr4g078330.3 | integrator complex subunit 7 | HC | chr4:30179...   569   e-162

>Medtr4g078330.2 | integrator complex subunit 7 | HC |
           chr4:30179144-30187317 | 20130731
          Length = 358

 Score =  579 bits (1493), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 279/353 (79%), Positives = 308/353 (87%)

Query: 1   MEPTCAACAMEWSIQLEKGLRSSKPGVPVKTILKLGPHLQLWSREFESGIDSNAIFGLVP 60
           MEPTCAACAMEWSIQLEKGLRS KPGVPVK IL++GPHLQ WSRE ESGI SN +FGLVP
Sbjct: 1   MEPTCAACAMEWSIQLEKGLRSGKPGVPVKAILQMGPHLQRWSRELESGIVSNGMFGLVP 60

Query: 61  GEDRLFANAILLRLADAFRGGDKEIRLSIVRVFLFERKHRDNGKHKQCKGLLSKARVANH 120
           GED LFAN ILLRLADAFRGG+ EIRLS+VRVFL ERKH DN KHKQCKGLLS ARVANH
Sbjct: 61  GEDELFANTILLRLADAFRGGNTEIRLSVVRVFLIERKHHDNRKHKQCKGLLSVARVANH 120

Query: 121 LEMLKRVKSVFQNGDSECKALALVLFGCWADFANDNAQIRYLILSSLVSTHDCEVIASLF 180
           LE+LK+VKSVF +GDSE KALALVLFGCWADFANDNAQIRYLILS+LVS HD E  ASLF
Sbjct: 121 LELLKQVKSVFNSGDSESKALALVLFGCWADFANDNAQIRYLILSTLVSPHDSEAKASLF 180

Query: 181 AAGCFCEISDDFACITLEMLFNMVNTPAVSLPIKLAAVRVFAKFKCSDSVASKAYKIGLQ 240
           AAGCFCEISDDFACITLEMLFNM+N+P VSLPIKLAA RVFAKFKCS SVA KAYKIGL 
Sbjct: 181 AAGCFCEISDDFACITLEMLFNMMNSPEVSLPIKLAAARVFAKFKCSYSVAKKAYKIGLD 240

Query: 241 LILNSSNEDLLVAMLFSLSKLASVSTVLASNEVDFLLSFVKREVASHVQETASKCIHYLL 300
           LI NSSNED+LV MLFSLSKLA++ST+L SN V+FL+SF++ ++ SHVQETA +CIH+L 
Sbjct: 241 LISNSSNEDILVIMLFSLSKLATISTLLTSNHVNFLVSFLEGQLTSHVQETALRCIHFLF 300

Query: 301 KNNPALKLYCNASFELPDGQTLQHPPSEDQAWKDDWRNDEIVELKNLFSDLEA 353
           +NNP+LKLYCN SFE+PDGQ L   PSE + WK DW +DE+VEL  L SD EA
Sbjct: 301 RNNPSLKLYCNTSFEVPDGQPLDLSPSEYETWKGDWTDDEMVELNKLLSDSEA 353


>Medtr4g078330.1 | integrator complex subunit 7 | HC |
           chr4:30179144-30187317 | 20130731
          Length = 358

 Score =  579 bits (1493), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 279/353 (79%), Positives = 308/353 (87%)

Query: 1   MEPTCAACAMEWSIQLEKGLRSSKPGVPVKTILKLGPHLQLWSREFESGIDSNAIFGLVP 60
           MEPTCAACAMEWSIQLEKGLRS KPGVPVK IL++GPHLQ WSRE ESGI SN +FGLVP
Sbjct: 1   MEPTCAACAMEWSIQLEKGLRSGKPGVPVKAILQMGPHLQRWSRELESGIVSNGMFGLVP 60

Query: 61  GEDRLFANAILLRLADAFRGGDKEIRLSIVRVFLFERKHRDNGKHKQCKGLLSKARVANH 120
           GED LFAN ILLRLADAFRGG+ EIRLS+VRVFL ERKH DN KHKQCKGLLS ARVANH
Sbjct: 61  GEDELFANTILLRLADAFRGGNTEIRLSVVRVFLIERKHHDNRKHKQCKGLLSVARVANH 120

Query: 121 LEMLKRVKSVFQNGDSECKALALVLFGCWADFANDNAQIRYLILSSLVSTHDCEVIASLF 180
           LE+LK+VKSVF +GDSE KALALVLFGCWADFANDNAQIRYLILS+LVS HD E  ASLF
Sbjct: 121 LELLKQVKSVFNSGDSESKALALVLFGCWADFANDNAQIRYLILSTLVSPHDSEAKASLF 180

Query: 181 AAGCFCEISDDFACITLEMLFNMVNTPAVSLPIKLAAVRVFAKFKCSDSVASKAYKIGLQ 240
           AAGCFCEISDDFACITLEMLFNM+N+P VSLPIKLAA RVFAKFKCS SVA KAYKIGL 
Sbjct: 181 AAGCFCEISDDFACITLEMLFNMMNSPEVSLPIKLAAARVFAKFKCSYSVAKKAYKIGLD 240

Query: 241 LILNSSNEDLLVAMLFSLSKLASVSTVLASNEVDFLLSFVKREVASHVQETASKCIHYLL 300
           LI NSSNED+LV MLFSLSKLA++ST+L SN V+FL+SF++ ++ SHVQETA +CIH+L 
Sbjct: 241 LISNSSNEDILVIMLFSLSKLATISTLLTSNHVNFLVSFLEGQLTSHVQETALRCIHFLF 300

Query: 301 KNNPALKLYCNASFELPDGQTLQHPPSEDQAWKDDWRNDEIVELKNLFSDLEA 353
           +NNP+LKLYCN SFE+PDGQ L   PSE + WK DW +DE+VEL  L SD EA
Sbjct: 301 RNNPSLKLYCNTSFEVPDGQPLDLSPSEYETWKGDWTDDEMVELNKLLSDSEA 353


>Medtr4g078330.4 | integrator complex subunit 7 | HC |
           chr4:30179144-30187317 | 20130731
          Length = 358

 Score =  579 bits (1493), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 279/353 (79%), Positives = 308/353 (87%)

Query: 1   MEPTCAACAMEWSIQLEKGLRSSKPGVPVKTILKLGPHLQLWSREFESGIDSNAIFGLVP 60
           MEPTCAACAMEWSIQLEKGLRS KPGVPVK IL++GPHLQ WSRE ESGI SN +FGLVP
Sbjct: 1   MEPTCAACAMEWSIQLEKGLRSGKPGVPVKAILQMGPHLQRWSRELESGIVSNGMFGLVP 60

Query: 61  GEDRLFANAILLRLADAFRGGDKEIRLSIVRVFLFERKHRDNGKHKQCKGLLSKARVANH 120
           GED LFAN ILLRLADAFRGG+ EIRLS+VRVFL ERKH DN KHKQCKGLLS ARVANH
Sbjct: 61  GEDELFANTILLRLADAFRGGNTEIRLSVVRVFLIERKHHDNRKHKQCKGLLSVARVANH 120

Query: 121 LEMLKRVKSVFQNGDSECKALALVLFGCWADFANDNAQIRYLILSSLVSTHDCEVIASLF 180
           LE+LK+VKSVF +GDSE KALALVLFGCWADFANDNAQIRYLILS+LVS HD E  ASLF
Sbjct: 121 LELLKQVKSVFNSGDSESKALALVLFGCWADFANDNAQIRYLILSTLVSPHDSEAKASLF 180

Query: 181 AAGCFCEISDDFACITLEMLFNMVNTPAVSLPIKLAAVRVFAKFKCSDSVASKAYKIGLQ 240
           AAGCFCEISDDFACITLEMLFNM+N+P VSLPIKLAA RVFAKFKCS SVA KAYKIGL 
Sbjct: 181 AAGCFCEISDDFACITLEMLFNMMNSPEVSLPIKLAAARVFAKFKCSYSVAKKAYKIGLD 240

Query: 241 LILNSSNEDLLVAMLFSLSKLASVSTVLASNEVDFLLSFVKREVASHVQETASKCIHYLL 300
           LI NSSNED+LV MLFSLSKLA++ST+L SN V+FL+SF++ ++ SHVQETA +CIH+L 
Sbjct: 241 LISNSSNEDILVIMLFSLSKLATISTLLTSNHVNFLVSFLEGQLTSHVQETALRCIHFLF 300

Query: 301 KNNPALKLYCNASFELPDGQTLQHPPSEDQAWKDDWRNDEIVELKNLFSDLEA 353
           +NNP+LKLYCN SFE+PDGQ L   PSE + WK DW +DE+VEL  L SD EA
Sbjct: 301 RNNPSLKLYCNTSFEVPDGQPLDLSPSEYETWKGDWTDDEMVELNKLLSDSEA 353


>Medtr4g078330.3 | integrator complex subunit 7 | HC |
           chr4:30179144-30187317 | 20130731
          Length = 355

 Score =  569 bits (1467), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 277/353 (78%), Positives = 306/353 (86%), Gaps = 3/353 (0%)

Query: 1   MEPTCAACAMEWSIQLEKGLRSSKPGVPVKTILKLGPHLQLWSREFESGIDSNAIFGLVP 60
           MEPTCAACAMEWSIQLEKGLRS   GVPVK IL++GPHLQ WSRE ESGI SN +FGLVP
Sbjct: 1   MEPTCAACAMEWSIQLEKGLRS---GVPVKAILQMGPHLQRWSRELESGIVSNGMFGLVP 57

Query: 61  GEDRLFANAILLRLADAFRGGDKEIRLSIVRVFLFERKHRDNGKHKQCKGLLSKARVANH 120
           GED LFAN ILLRLADAFRGG+ EIRLS+VRVFL ERKH DN KHKQCKGLLS ARVANH
Sbjct: 58  GEDELFANTILLRLADAFRGGNTEIRLSVVRVFLIERKHHDNRKHKQCKGLLSVARVANH 117

Query: 121 LEMLKRVKSVFQNGDSECKALALVLFGCWADFANDNAQIRYLILSSLVSTHDCEVIASLF 180
           LE+LK+VKSVF +GDSE KALALVLFGCWADFANDNAQIRYLILS+LVS HD E  ASLF
Sbjct: 118 LELLKQVKSVFNSGDSESKALALVLFGCWADFANDNAQIRYLILSTLVSPHDSEAKASLF 177

Query: 181 AAGCFCEISDDFACITLEMLFNMVNTPAVSLPIKLAAVRVFAKFKCSDSVASKAYKIGLQ 240
           AAGCFCEISDDFACITLEMLFNM+N+P VSLPIKLAA RVFAKFKCS SVA KAYKIGL 
Sbjct: 178 AAGCFCEISDDFACITLEMLFNMMNSPEVSLPIKLAAARVFAKFKCSYSVAKKAYKIGLD 237

Query: 241 LILNSSNEDLLVAMLFSLSKLASVSTVLASNEVDFLLSFVKREVASHVQETASKCIHYLL 300
           LI NSSNED+LV MLFSLSKLA++ST+L SN V+FL+SF++ ++ SHVQETA +CIH+L 
Sbjct: 238 LISNSSNEDILVIMLFSLSKLATISTLLTSNHVNFLVSFLEGQLTSHVQETALRCIHFLF 297

Query: 301 KNNPALKLYCNASFELPDGQTLQHPPSEDQAWKDDWRNDEIVELKNLFSDLEA 353
           +NNP+LKLYCN SFE+PDGQ L   PSE + WK DW +DE+VEL  L SD EA
Sbjct: 298 RNNPSLKLYCNTSFEVPDGQPLDLSPSEYETWKGDWTDDEMVELNKLLSDSEA 350