Miyakogusa Predicted Gene

Lj2g3v2900210.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2900210.2 tr|A9T1C3|A9T1C3_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_190638,53.93,7e-18,Ribosomal_L30,Ribosomal protein L30,
ferredoxin-like fold domain;
Ribosomal_L30_ferredoxin-like,Ribo,CUFF.39547.2
         (107 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g016300.2 | 50S ribosomal L30-like protein | HC | chr8:547...   201   2e-52
Medtr8g016300.1 | 50S ribosomal L30-like protein | HC | chr8:547...   201   2e-52
Medtr8g099150.2 | 50S ribosomal L30-like protein | HC | chr8:416...   200   2e-52
Medtr8g099150.1 | 50S ribosomal L30-like protein | HC | chr8:416...   200   2e-52

>Medtr8g016300.2 | 50S ribosomal L30-like protein | HC |
           chr8:5475719-5478648 | 20130731
          Length = 106

 Score =  201 bits (510), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 93/103 (90%), Positives = 102/103 (99%)

Query: 1   MNAFKAYKACVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRG 60
           MNAFKA+K+CVPIA+SPNLYITLVRGIPGTR+ HRRTLEALRLGKCNRTVMRWNTPTVRG
Sbjct: 3   MNAFKAFKSCVPIAYSPNLYITLVRGIPGTRKQHRRTLEALRLGKCNRTVMRWNTPTVRG 62

Query: 61  MLQQVKRLVVIETEEMYKARKQKEEAHRALRPPLVINHQPSSA 103
           M+QQVKRLVV+ETEEMYKARK+KEEAHRALRPPLVINHQP+S+
Sbjct: 63  MIQQVKRLVVVETEEMYKARKEKEEAHRALRPPLVINHQPASS 105


>Medtr8g016300.1 | 50S ribosomal L30-like protein | HC |
           chr8:5475719-5478648 | 20130731
          Length = 106

 Score =  201 bits (510), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 93/103 (90%), Positives = 102/103 (99%)

Query: 1   MNAFKAYKACVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRG 60
           MNAFKA+K+CVPIA+SPNLYITLVRGIPGTR+ HRRTLEALRLGKCNRTVMRWNTPTVRG
Sbjct: 3   MNAFKAFKSCVPIAYSPNLYITLVRGIPGTRKQHRRTLEALRLGKCNRTVMRWNTPTVRG 62

Query: 61  MLQQVKRLVVIETEEMYKARKQKEEAHRALRPPLVINHQPSSA 103
           M+QQVKRLVV+ETEEMYKARK+KEEAHRALRPPLVINHQP+S+
Sbjct: 63  MIQQVKRLVVVETEEMYKARKEKEEAHRALRPPLVINHQPASS 105


>Medtr8g099150.2 | 50S ribosomal L30-like protein | HC |
           chr8:41687399-41684763 | 20130731
          Length = 106

 Score =  200 bits (509), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 93/103 (90%), Positives = 101/103 (98%)

Query: 1   MNAFKAYKACVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRG 60
           MNAFKAYK+CVPIA+SPNLYITLVRGIPGTR+ HRRTLEALRLGKCNRTVMRWNTPTVRG
Sbjct: 3   MNAFKAYKSCVPIAYSPNLYITLVRGIPGTRKQHRRTLEALRLGKCNRTVMRWNTPTVRG 62

Query: 61  MLQQVKRLVVIETEEMYKARKQKEEAHRALRPPLVINHQPSSA 103
           M+QQVKRLVV+ETEEMYKARK+KEE HRALRPPLVINHQP+S+
Sbjct: 63  MIQQVKRLVVVETEEMYKARKEKEETHRALRPPLVINHQPASS 105


>Medtr8g099150.1 | 50S ribosomal L30-like protein | HC |
           chr8:41687399-41684763 | 20130731
          Length = 106

 Score =  200 bits (509), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 93/103 (90%), Positives = 101/103 (98%)

Query: 1   MNAFKAYKACVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRG 60
           MNAFKAYK+CVPIA+SPNLYITLVRGIPGTR+ HRRTLEALRLGKCNRTVMRWNTPTVRG
Sbjct: 3   MNAFKAYKSCVPIAYSPNLYITLVRGIPGTRKQHRRTLEALRLGKCNRTVMRWNTPTVRG 62

Query: 61  MLQQVKRLVVIETEEMYKARKQKEEAHRALRPPLVINHQPSSA 103
           M+QQVKRLVV+ETEEMYKARK+KEE HRALRPPLVINHQP+S+
Sbjct: 63  MIQQVKRLVVVETEEMYKARKEKEETHRALRPPLVINHQPASS 105