Miyakogusa Predicted Gene

Lj2g3v2879490.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2879490.2 Non Characterized Hit- tr|D8UAV0|D8UAV0_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,56.76,0.00000000000005,UNCHARACTERIZED,NULL; DUF423,Protein of
unknown function DUF423,CUFF.39482.2
         (111 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g085420.1 | UPF0451 C17orf61-like protein | HC | chr5:3692...   206   3e-54
Medtr5g085420.2 | UPF0451 C17orf61-like protein | HC | chr5:3692...   142   8e-35

>Medtr5g085420.1 | UPF0451 C17orf61-like protein | HC |
           chr5:36927167-36930395 | 20130731
          Length = 111

 Score =  206 bits (525), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 100/111 (90%), Positives = 108/111 (97%)

Query: 1   MDPHLWHKVAAISGVAALGLGTYGAHGFKPQNPSYKEVWHTASLYHLVHTAALLAAPITK 60
           M+P +WHKVAAISGVAALGLGTYGAH FKPQNP+YK+VWHTASLYHLVHTAAL++APITK
Sbjct: 1   MNPLIWHKVAAISGVAALGLGTYGAHAFKPQNPTYKDVWHTASLYHLVHTAALVSAPITK 60

Query: 61  HPNAFGGLLTAGIVAFSGTCYTVAFLEDRKYSTLAPFGGFAFIAAWGSLFF 111
           +PN FGGLLTAGI+AFSGTCYTVAFLEDRKYSTLAPFGGFAFIAAWGSLFF
Sbjct: 61  NPNVFGGLLTAGILAFSGTCYTVAFLEDRKYSTLAPFGGFAFIAAWGSLFF 111


>Medtr5g085420.2 | UPF0451 C17orf61-like protein | HC |
          chr5:36927178-36930395 | 20130731
          Length = 81

 Score =  142 bits (357), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 76/80 (95%)

Query: 1  MDPHLWHKVAAISGVAALGLGTYGAHGFKPQNPSYKEVWHTASLYHLVHTAALLAAPITK 60
          M+P +WHKVAAISGVAALGLGTYGAH FKPQNP+YK+VWHTASLYHLVHTAAL++APITK
Sbjct: 1  MNPLIWHKVAAISGVAALGLGTYGAHAFKPQNPTYKDVWHTASLYHLVHTAALVSAPITK 60

Query: 61 HPNAFGGLLTAGIVAFSGTC 80
          +PN FGGLLTAGI+AFSGT 
Sbjct: 61 NPNVFGGLLTAGILAFSGTT 80