Miyakogusa Predicted Gene

Lj2g3v2703350.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2703350.1 Non Characterized Hit- tr|I3SNM9|I3SNM9_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.65,0,seg,NULL;
JAB/MPN domain,JAB1/Mov34/MPN/PAD-1; JAB,JAB1/Mov34/MPN/PAD-1;
MitMem_reg,Rpn11/EIF3F C-te,CUFF.39213.1
         (288 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g070190.1 | eukaryotic translation initiation factor 3 sub...   483   e-136
Medtr5g082000.1 | eukaryotic translation initiation factor 3 sub...   469   e-132
Medtr3g070180.1 | 26S proteasome regulatory particle non-ATPase ...   102   3e-22
Medtr5g081980.1 | 26S proteasome regulatory particle non-ATPase ...   102   4e-22
Medtr3g009270.1 | COP9 signalosome complex subunit 6a | HC | chr...    52   9e-07

>Medtr3g070190.1 | eukaryotic translation initiation factor 3
           subunit F | HC | chr3:31455221-31449668 | 20130731
          Length = 288

 Score =  483 bits (1242), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 235/288 (81%), Positives = 251/288 (87%)

Query: 1   MAASDRTVLQFXXXXXXXXXXXARVHPLVIFNICDCFVRRPDQAERVIGTLLGSILPDGT 60
           MA+++RTVLQF           A+VHPLV+FNICDC+VRRPDQAERVIGTLLGS+LPDGT
Sbjct: 1   MASTNRTVLQFSSSSSSSQSLSAKVHPLVVFNICDCYVRRPDQAERVIGTLLGSVLPDGT 60

Query: 61  VDIRNSYAVPHNESIDQVALDIEYQHNMLVAHQKVNPKEVIVGWYSTGLGVTGHSVLIHE 120
           VDIRNSYAVPHNES+DQVALDIEY HNML++HQKVN KE+IVGWYSTGLGVTG S LIHE
Sbjct: 61  VDIRNSYAVPHNESVDQVALDIEYHHNMLLSHQKVNQKEIIVGWYSTGLGVTGGSALIHE 120

Query: 121 FFSREVTNPIHLTVDTEFANGVGTIKAYVSNNLSLGDRQIAAQFQEIPLDLRMVEAERIG 180
           F+SREV NPIHLTVDT F  G GTIKAYVSNNLSLGDRQIAAQFQEIPLDLRMVEAERIG
Sbjct: 121 FYSREVPNPIHLTVDTGFTAGGGTIKAYVSNNLSLGDRQIAAQFQEIPLDLRMVEAERIG 180

Query: 181 FDTLKATTVEKIPSDLEGMEASMEHLLALXXXXXXXXXXXXEGRIAPDNNIGKFISDAVG 240
           FD LKATTV+KIPSDLEGMEASMEHLLAL            EGR+APDN IGKFISDAVG
Sbjct: 181 FDILKATTVDKIPSDLEGMEASMEHLLALINDIYKYVDDVVEGRVAPDNKIGKFISDAVG 240

Query: 241 SLPKSPPAVFDKLVNDSLQDHLLSLYLSSITRTQLSLAEKLNTAAQIL 288
           SLPK PP+ FDKLVNDSLQDHLL +YLSSITRTQLSLAEKLNTAAQIL
Sbjct: 241 SLPKLPPSDFDKLVNDSLQDHLLMVYLSSITRTQLSLAEKLNTAAQIL 288


>Medtr5g082000.1 | eukaryotic translation initiation factor 3
           subunit F | HC | chr5:35199821-35195812 | 20130731
          Length = 284

 Score =  469 bits (1207), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/288 (79%), Positives = 245/288 (85%), Gaps = 4/288 (1%)

Query: 1   MAASDRTVLQFXXXXXXXXXXXARVHPLVIFNICDCFVRRPDQAERVIGTLLGSILPDGT 60
           MAAS RTVLQF            +VHPLVIFNICDC+VRRPDQAERVIGTLLGS+LPDGT
Sbjct: 1   MAASKRTVLQFSSSQTLS----GKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGT 56

Query: 61  VDIRNSYAVPHNESIDQVALDIEYQHNMLVAHQKVNPKEVIVGWYSTGLGVTGHSVLIHE 120
           VDIRNSYAVPHNES+DQVALDIEY HNML++HQKVNPKEVIVGWYSTGLGVTG S LIHE
Sbjct: 57  VDIRNSYAVPHNESVDQVALDIEYHHNMLLSHQKVNPKEVIVGWYSTGLGVTGGSALIHE 116

Query: 121 FFSREVTNPIHLTVDTEFANGVGTIKAYVSNNLSLGDRQIAAQFQEIPLDLRMVEAERIG 180
           F+SREV+NPIHLTVDT FA+G G IKAYVSNNLSLGD+QIAAQFQEIPLDLRMVEAERIG
Sbjct: 117 FYSREVSNPIHLTVDTGFADGEGAIKAYVSNNLSLGDQQIAAQFQEIPLDLRMVEAERIG 176

Query: 181 FDTLKATTVEKIPSDLEGMEASMEHLLALXXXXXXXXXXXXEGRIAPDNNIGKFISDAVG 240
           FD LK+T+V+KIPSDLEGMEASM HLLAL            EGR+ PDN IGK ISD VG
Sbjct: 177 FDNLKSTSVDKIPSDLEGMEASMTHLLALVDDTYKYVDDVVEGRVDPDNKIGKCISDVVG 236

Query: 241 SLPKSPPAVFDKLVNDSLQDHLLSLYLSSITRTQLSLAEKLNTAAQIL 288
           SLPK P   FDKLVNDSLQDHLL +YLSSITRTQL LAEKLNTAAQIL
Sbjct: 237 SLPKIPSLAFDKLVNDSLQDHLLMVYLSSITRTQLGLAEKLNTAAQIL 284


>Medtr3g070180.1 | 26S proteasome regulatory particle non-ATPase
           subunit 8 | HC | chr3:31447973-31442165 | 20130731
          Length = 309

 Score =  102 bits (255), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/268 (29%), Positives = 128/268 (47%), Gaps = 11/268 (4%)

Query: 25  VHPLVIFNICDCFVR-RPDQAERVIGTLLGSILPDGTVDIRNSYAVPHNESIDQVA---L 80
           VHPLV+ +I D + R   D  +RV+G LLGS    GTVD+ NSYAVP  E     +   L
Sbjct: 19  VHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSTF-KGTVDVSNSYAVPFEEDDKDPSIWFL 77

Query: 81  DIEYQHNMLVAHQKVNPKEVIVGWYSTGLGVTGHSVLIHEFFSREVTNPIHLTVDTEFAN 140
           D  Y   M    +++N KE +VGWYSTG  +  + + IH  F+  V NP+ + +D E   
Sbjct: 78  DHNYHEAMFSMFKRINAKEHVVGWYSTGPKLRENDLDIHGLFNDYVPNPVLVIIDVEPKE 137

Query: 141 -GVGTIKAYVSNNLSLGDRQIAAQ-FQEIPLDLRMVEAERIGFDTL----KATTVEKIPS 194
            G+ T   Y    +     Q + + F  +  ++   E E IG + L    K TT+  + +
Sbjct: 138 LGIPTKAYYAVEEVKENATQKSQKVFVHVQSEIAAHEVEEIGVEHLLRDVKDTTISTLAT 197

Query: 195 DLEGMEASMEHLLALXXXXXXXXXXXXEGRIAPDNNIGKFISDAVGSLPKSPPAVFDKLV 254
           ++ G   +++ L A             +G++  ++ I   + D    LP    +   K  
Sbjct: 198 EVSGKLTALKGLDARLKEIRGYLDLVIDGKLPLNHEILYHLQDVFNLLPNLNVSDLIKAF 257

Query: 255 NDSLQDHLLSLYLSSITRTQLSLAEKLN 282
                D +L +YLSS+ R+ ++L   +N
Sbjct: 258 AVKTNDMMLVIYLSSLIRSVIALHNLIN 285


>Medtr5g081980.1 | 26S proteasome regulatory particle non-ATPase
           subunit 8 | HC | chr5:35180311-35175443 | 20130731
          Length = 310

 Score =  102 bits (255), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/268 (29%), Positives = 127/268 (47%), Gaps = 11/268 (4%)

Query: 25  VHPLVIFNICDCFVR-RPDQAERVIGTLLGSILPDGTVDIRNSYAVPHNESIDQVA---L 80
           VHPLV+ +I D + R   D  +RV+G LLGS    GTVDI NSYAVP  E     +   L
Sbjct: 19  VHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFK-GTVDITNSYAVPFEEDDKDPSIWFL 77

Query: 81  DIEYQHNMLVAHQKVNPKEVIVGWYSTGLGVTGHSVLIHEFFSREVTNPIHLTVDTEFAN 140
           D  Y  +M    +++N KE +VGWYSTG  +  + + IH  F+  V NP+ + +D E   
Sbjct: 78  DHNYHESMFSMFKRINAKEHVVGWYSTGPKLRENDLDIHALFNDYVPNPVLVIIDVEPKE 137

Query: 141 -GVGTIKAYVSNNLSLGDRQIAAQ-FQEIPLDLRMVEAERIGFDTL----KATTVEKIPS 194
            G+ T   Y    +     Q + + F  +  ++   E E IG + L    K TT+  + +
Sbjct: 138 LGIPTKAYYAVEEVKENATQKSQKVFVHVQSEIAAHEVEEIGVEHLLRDVKDTTISTLAT 197

Query: 195 DLEGMEASMEHLLALXXXXXXXXXXXXEGRIAPDNNIGKFISDAVGSLPKSPPAVFDKLV 254
           ++     +++ L A             +G++  ++ I   + D    LP        K  
Sbjct: 198 EVSAKLTALKGLDARLKEIRSYLDLVIDGKLPLNHEILYHLQDVFNLLPNLNVTDLIKAF 257

Query: 255 NDSLQDHLLSLYLSSITRTQLSLAEKLN 282
                D +L +YLSS+ R+ ++L   +N
Sbjct: 258 AVKTNDQMLVIYLSSLIRSVIALHNLIN 285


>Medtr3g009270.1 | COP9 signalosome complex subunit 6a | HC |
           chr3:1917695-1909047 | 20130731
          Length = 318

 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 65/299 (21%), Positives = 121/299 (40%), Gaps = 44/299 (14%)

Query: 24  RVHPLVIFNICDCFVRRPDQAE------------------------RVIGTLLGSILPDG 59
           ++HPLVI NI D + R   Q                          RV G ++G +    
Sbjct: 12  KLHPLVIVNISDHYTRVKSQMNPTLAPHNNATNNGGDGVVSSLPPPRVFGCVIG-VQKGR 70

Query: 60  TVDIRNSYAV---PHNESIDQVALDIEYQHNMLVAHQKVNPKEVIVGWYSTGLGVTGHSV 116
           TV+I NS+ +   P   S+D+  L+ + +      ++KV P   I+GWYSTG       +
Sbjct: 71  TVEIFNSFELLYDPSTHSLDRPFLEKKQE-----LYKKVFPHFYILGWYSTGSDAEESDM 125

Query: 117 LIHEFFSREVTNPIHLTVDTEFANGVGTIKAYV-SNNLSLGDRQIAAQFQEIPLDLRMVE 175
            IH+       +P+++ ++    +    +   +  + L + D      F      +  VE
Sbjct: 126 HIHKALMDINESPVYVLLNPAINHSQKDLPVSIFESELHVIDGIPQLIFVRSSYTIETVE 185

Query: 176 AERIGFDTLK-------ATTVEKIPSDLEGMEASMEHLLALXXXXXXXXXXXXEGRIAPD 228
           AERI  D +         +   ++ ++L G+ ++++ L +             +G +  +
Sbjct: 186 AERISVDHVAHLKPSDGGSAATQLAANLTGIHSAIKMLHSRIKVLHHYLLAMEKGDVPCE 245

Query: 229 NNIGKFISDAVGSLPKSPPAVFDKLVNDSLQDHLLSLYLSSITRTQLS---LAEKLNTA 284
           N++ + +S  +  LP      F         D LL  YL+ +T    +   L +K +TA
Sbjct: 246 NSLLRQVSSLLRRLPAIESGKFQDDFLMEYNDTLLISYLAMLTNCSSAMNDLVDKFSTA 304