Miyakogusa Predicted Gene

Lj2g3v2702340.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2702340.1 Non Characterized Hit- tr|K4DAY4|K4DAY4_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,38.62,2e-19,Homeodomain,Homeodomain;
Homeodomain-like,Homeodomain-like; Homeobox,Homeodomain;
HOMEOBOX_2,Homeodo,CUFF.39210.1
         (178 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g081990.1 | wuschel-related homeobox protein | HC | chr5:3...   237   4e-63
Medtr7g060630.1 | wuschel-related homeobox protein | HC | chr7:2...   104   5e-23
Medtr4g084550.1 | wuschel-related homeobox protein | HC | chr4:3...   102   2e-22
Medtr8g107210.1 | stenofolia-like protein | HC | chr8:45305362-4...   102   3e-22
Medtr5g021930.1 | wuschel-related homeobox protein | HC | chr5:8...    98   4e-21
Medtr1g019130.2 | wuschel-related homeobox protein | HC | chr1:5...    97   6e-21
Medtr1g019130.1 | wuschel-related homeobox protein | HC | chr1:5...    97   8e-21
Medtr4g063735.1 | wuschel-related homeobox protein | HC | chr4:2...    93   2e-19
Medtr8g095580.1 | wuschel-related homeobox-like protein | HC | c...    82   3e-16
Medtr3g088485.1 | wuschel-related homeobox-like protein | HC | c...    80   8e-16
Medtr2g015000.1 | wuschel homeobox protein | HC | chr2:4393059-4...    75   4e-14
Medtr7g025010.1 | wuschel-related homeobox protein, putative | L...    74   8e-14
Medtr4g088070.1 | wuschel homeobox protein | LC | chr4:34685878-...    69   3e-12
Medtr1g115315.1 | wuschel-related homeobox protein | HC | chr1:5...    65   3e-11
Medtr1g115315.2 | wuschel-related homeobox protein | HC | chr1:5...    65   4e-11
Medtr4g088080.1 | wuschel homeobox protein | LC | chr4:34693672-...    64   9e-11
Medtr3g115620.1 | wuschel-related homeobox protein | HC | chr3:5...    62   4e-10
Medtr7g023810.1 | homeodomain protein HB2 | HC | chr7:7798636-77...    55   3e-08
Medtr6g027390.1 | wuschel-related homeobox protein | HC | chr6:9...    55   5e-08
Medtr7g086940.1 | wuschel-related homeobox protein | HC | chr7:3...    50   1e-06

>Medtr5g081990.1 | wuschel-related homeobox protein | HC |
           chr5:35185060-35183966 | 20130731
          Length = 184

 Score =  237 bits (605), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 115/154 (74%), Positives = 133/154 (86%), Gaps = 6/154 (3%)

Query: 25  RWNPTTEQVKVLTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQK 84
           RWNPTTEQVK+LTELF +GLRTPSTDQIQKIS QLSFYGKIESKNVFYWFQNHKARERQK
Sbjct: 33  RWNPTTEQVKLLTELFRAGLRTPSTDQIQKISNQLSFYGKIESKNVFYWFQNHKARERQK 92

Query: 85  RRKVTFDDKDFNVILRENSMSKNSSKQNYAQFYQVTEPERVIETLQLFPLNSFGESESKN 144
           RRKV+FDD    ++ R+NSM  N+S Q +A+ Y  +EP+RVIETL+LFPLNSFGESES+ 
Sbjct: 93  RRKVSFDDDKDVIVHRDNSM--NASTQRFAEMY--SEPDRVIETLELFPLNSFGESESEK 148

Query: 145 LRVHANECRDSAMFSY--LMGEQMDHPPLDLRLS 176
             +HANECR++ MF+Y   MGEQM+HPPLDLRLS
Sbjct: 149 WSMHANECRENTMFAYTCTMGEQMEHPPLDLRLS 182


>Medtr7g060630.1 | wuschel-related homeobox protein | HC |
          chr7:21930278-21929162 | 20130731
          Length = 206

 Score =  104 bits (259), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 45/63 (71%), Positives = 55/63 (87%)

Query: 25 RWNPTTEQVKVLTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQK 84
          RW+PTTEQ+ +L EL+ SG+RTPS  QIQ+I+T LSFYG+IE KNVFYWFQNHKAR+RQK
Sbjct: 8  RWSPTTEQLMILEELYRSGIRTPSAVQIQQITTHLSFYGRIEGKNVFYWFQNHKARDRQK 67

Query: 85 RRK 87
           R+
Sbjct: 68 LRR 70


>Medtr4g084550.1 | wuschel-related homeobox protein | HC |
           chr4:32905916-32907479 | 20130731
          Length = 184

 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 66/91 (72%)

Query: 25  RWNPTTEQVKVLTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQK 84
           RW+PT  Q+ VL EL+  G++TPS +QIQ+I++QL  +GKIE KNVFYWFQNHKARERQK
Sbjct: 64  RWSPTPVQLLVLEELYRQGMKTPSAEQIQQIASQLRQFGKIEGKNVFYWFQNHKARERQK 123

Query: 85  RRKVTFDDKDFNVILRENSMSKNSSKQNYAQ 115
           RR++  ++   +   +E  +  NS KQ  A+
Sbjct: 124 RRRLEMEETTEDKKEKEKYVMGNSKKQEGAE 154


>Medtr8g107210.1 | stenofolia-like protein | HC |
           chr8:45305362-45303362 | 20130731
          Length = 358

 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 44/63 (69%), Positives = 52/63 (82%)

Query: 25  RWNPTTEQVKVLTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQK 84
           RWNPT EQ++ L EL+  G RTPS +QIQ+I+ QL  +GKIE KNVFYWFQNHKARERQK
Sbjct: 96  RWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRKFGKIEGKNVFYWFQNHKARERQK 155

Query: 85  RRK 87
           RR+
Sbjct: 156 RRR 158


>Medtr5g021930.1 | wuschel-related homeobox protein | HC |
           chr5:8555099-8553751 | 20130731
          Length = 302

 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 44/75 (58%), Positives = 60/75 (80%), Gaps = 5/75 (6%)

Query: 25  RWNPTTEQVKVLTELF-SSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQ 83
           RW PTT+Q+++L +L+ ++G+R+PS +QIQ+IS +L  YGKIE KNVFYWFQNHKARERQ
Sbjct: 30  RWTPTTDQIRILKDLYYNNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQ 89

Query: 84  KRRKVTFDDKDFNVI 98
           K+R  +    D NV+
Sbjct: 90  KKRFTS----DVNVV 100


>Medtr1g019130.2 | wuschel-related homeobox protein | HC |
           chr1:5704096-5705687 | 20130731
          Length = 228

 Score = 97.4 bits (241), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 41/63 (65%), Positives = 52/63 (82%)

Query: 25  RWNPTTEQVKVLTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQK 84
           RWNPT EQ+ +L  L+  G+RTP+  QI++I+ QLS YGKIE KNVFYWFQNHKARERQK
Sbjct: 90  RWNPTQEQIGILEMLYRGGMRTPNAQQIEQITVQLSKYGKIEGKNVFYWFQNHKARERQK 149

Query: 85  RRK 87
           +++
Sbjct: 150 QKR 152


>Medtr1g019130.1 | wuschel-related homeobox protein | HC |
           chr1:5704096-5705687 | 20130731
          Length = 236

 Score = 97.1 bits (240), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 41/63 (65%), Positives = 52/63 (82%)

Query: 25  RWNPTTEQVKVLTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQK 84
           RWNPT EQ+ +L  L+  G+RTP+  QI++I+ QLS YGKIE KNVFYWFQNHKARERQK
Sbjct: 90  RWNPTQEQIGILEMLYRGGMRTPNAQQIEQITVQLSKYGKIEGKNVFYWFQNHKARERQK 149

Query: 85  RRK 87
           +++
Sbjct: 150 QKR 152


>Medtr4g063735.1 | wuschel-related homeobox protein | HC |
          chr4:23615955-23617663 | 20130731
          Length = 257

 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 37/63 (58%), Positives = 51/63 (80%)

Query: 25 RWNPTTEQVKVLTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQK 84
          RWNPT EQ+ +L  L+  G++TPS ++IQ+I+ +L  YG IE KNVFYWFQNHKAR+RQK
Sbjct: 25 RWNPTKEQISMLENLYKQGIKTPSAEEIQEITARLRVYGHIEGKNVFYWFQNHKARQRQK 84

Query: 85 RRK 87
          +++
Sbjct: 85 QKQ 87


>Medtr8g095580.1 | wuschel-related homeobox-like protein | HC |
           chr8:40005406-40004827 | 20130731
          Length = 165

 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 43/56 (76%)

Query: 35  VLTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKVTF 90
            + EL+  G RTPS +QIQ+I+ QL   GKIE KNVFYWFQNHKARERQKRR+  F
Sbjct: 92  AVEELYRRGTRTPSAEQIQQITAQLRKIGKIEGKNVFYWFQNHKARERQKRRRQMF 147


>Medtr3g088485.1 | wuschel-related homeobox-like protein | HC |
           chr3:40220146-40220726 | 20130731
          Length = 163

 Score = 80.5 bits (197), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 36/56 (64%), Positives = 43/56 (76%)

Query: 35  VLTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKVTF 90
            + EL+  G RTP  +QIQ+I+ QL  +GKIE KNVFYWFQNHKARERQKRR+  F
Sbjct: 90  TVEELYRRGTRTPYAEQIQQITAQLRKFGKIEGKNVFYWFQNHKARERQKRRRQMF 145


>Medtr2g015000.1 | wuschel homeobox protein | HC |
           chr2:4393059-4395325 | 20130731
          Length = 457

 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 44/64 (68%)

Query: 25  RWNPTTEQVKVLTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQK 84
           RWNP  EQ+++L  +F+SG+  P  ++I+KI  QL  YG++   NVFYWFQN K+R + K
Sbjct: 55  RWNPKPEQIRILEAIFNSGMVNPPREEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 114

Query: 85  RRKV 88
            R +
Sbjct: 115 LRHL 118


>Medtr7g025010.1 | wuschel-related homeobox protein, putative | LC |
           chr7:8283410-8286927 | 20130731
          Length = 590

 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 44/62 (70%)

Query: 25  RWNPTTEQVKVLTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQK 84
           RWNP  +Q+++L  +F+SG+  P  ++I KI  QL  +G++   NVFYWFQN K+R +QK
Sbjct: 47  RWNPKPQQIRILEAIFNSGMVNPPREEITKIREQLQEFGQVGDANVFYWFQNRKSRSKQK 106

Query: 85  RR 86
           +R
Sbjct: 107 KR 108


>Medtr4g088070.1 | wuschel homeobox protein | LC |
          chr4:34685878-34688712 | 20130731
          Length = 413

 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 43/61 (70%)

Query: 25 RWNPTTEQVKVLTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQK 84
          RW P  EQ+++L  +++SG++ P  D+I+KI  QL  +G+I   +VFYWFQN K++ + K
Sbjct: 29 RWIPKPEQIRILEAIYNSGMKNPPVDEIKKIREQLQEFGQIGDASVFYWFQNRKSKGKNK 88

Query: 85 R 85
          +
Sbjct: 89 K 89


>Medtr1g115315.1 | wuschel-related homeobox protein | HC |
           chr1:52025791-52029215 | 20130731
          Length = 264

 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 43/60 (71%)

Query: 25  RWNPTTEQVKVLTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQK 84
           RW PT  Q+++L  +F  G  TPS ++I++I+T+LS +G+I   NV+ WFQN +AR ++K
Sbjct: 85  RWTPTPVQLQILERIFDQGNGTPSKEKIKEIATELSQHGQISETNVYNWFQNRRARSKRK 144


>Medtr1g115315.2 | wuschel-related homeobox protein | HC |
           chr1:52025869-52029102 | 20130731
          Length = 262

 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 43/60 (71%)

Query: 25  RWNPTTEQVKVLTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQK 84
           RW PT  Q+++L  +F  G  TPS ++I++I+T+LS +G+I   NV+ WFQN +AR ++K
Sbjct: 85  RWTPTPVQLQILERIFDQGNGTPSKEKIKEIATELSQHGQISETNVYNWFQNRRARSKRK 144


>Medtr4g088080.1 | wuschel homeobox protein | LC |
           chr4:34693672-34695281 | 20130731
          Length = 319

 Score = 63.5 bits (153), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 2/69 (2%)

Query: 25  RWNPTTEQVKVLTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQK 84
           RW P  EQ+ +L  +++SG   P  D+I+KI  QL  +G++   +VFYWFQN K R   K
Sbjct: 40  RWIPKPEQIHILEAIYNSGTTNPRRDEIKKIREQLEEFGQVGDSSVFYWFQNRKYRS--K 97

Query: 85  RRKVTFDDK 93
             KV +++K
Sbjct: 98  TNKVPYNEK 106


>Medtr3g115620.1 | wuschel-related homeobox protein | HC |
           chr3:54113734-54116409 | 20130731
          Length = 215

 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 3/104 (2%)

Query: 25  RWNPTTEQVKVLTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQK 84
           RW P   Q+++L  +F  G  TP+  +I+ I+ +L  +G+I   NV+ WFQN +AR ++K
Sbjct: 82  RWTPMPIQLQILERIFDEGNGTPTKQKIKDITIELGQHGQISETNVYNWFQNRRARSKRK 141

Query: 85  RRKV---TFDDKDFNVILRENSMSKNSSKQNYAQFYQVTEPERV 125
           +  V      + + +  +     +K   + +  QF++   P RV
Sbjct: 142 QSSVPAGNHAEPEADTEVESPKENKTCEESDQVQFFESLSPHRV 185


>Medtr7g023810.1 | homeodomain protein HB2 | HC |
           chr7:7798636-7797897 | 20130731
          Length = 183

 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 44/71 (61%)

Query: 25  RWNPTTEQVKVLTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQK 84
           RW PT  Q++ L  +F +   TPS ++I++I+  L+ +G+I   +V+ WFQN +AR + K
Sbjct: 68  RWTPTPVQLQSLERIFEAETGTPSKEKIKEITADLTKHGQISETSVYNWFQNRRARSKGK 127

Query: 85  RRKVTFDDKDF 95
           ++    D+ + 
Sbjct: 128 QQNNVNDEPEV 138


>Medtr6g027390.1 | wuschel-related homeobox protein | HC |
          chr6:9379269-9376397 | 20130731
          Length = 300

 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 31/52 (59%)

Query: 25 RWNPTTEQVKVLTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQN 76
          RW P  EQ+ +L  +F+SG+  P  D+  +I   L  +G +   NVFYWFQN
Sbjct: 32 RWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGAVGDANVFYWFQN 83


>Medtr7g086940.1 | wuschel-related homeobox protein | HC |
          chr7:33813041-33816667 | 20130731
          Length = 272

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 29/50 (58%)

Query: 25 RWNPTTEQVKVLTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWF 74
          RW P  EQ+ +L  +F+SG+  P  ++  KI   L  +G +   NVFYWF
Sbjct: 28 RWTPKPEQILILESIFNSGMVNPPKEETIKIRKLLEKFGNVGDANVFYWF 77