Miyakogusa Predicted Gene

Lj2g3v2688020.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2688020.1 Non Characterized Hit- tr|F6HK57|F6HK57_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,80,2e-18,ubiquitin,Ubiquitin; Ubiquitin-like,NULL; no
description,NULL,CUFF.39203.1
         (103 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g088640.1 | ubiquitin-like domain CTD phosphatase | HC | c...    96   1e-20

>Medtr8g088640.1 | ubiquitin-like domain CTD phosphatase | HC |
           chr8:36805772-36808866 | 20130731
          Length = 335

 Score = 95.5 bits (236), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 44/52 (84%), Positives = 46/52 (88%)

Query: 52  MPLKVKWSGKDYTVRVCGDDTIVELKRRICELTNVLPIRQKFLYPKLGSKLN 103
           + LKVKWSGKDYTVRVC DDT+ ELKRRICE TNVLPIRQK LYPKL SKLN
Sbjct: 16  ITLKVKWSGKDYTVRVCADDTVGELKRRICESTNVLPIRQKLLYPKLASKLN 67