Miyakogusa Predicted Gene

Lj2g3v2646170.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2646170.1 Non Characterized Hit- tr|I1JMA9|I1JMA9_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,76.6,0.00000000000005,no description,Regulator of chromosome
condensation/beta-lactamase-inhibitor protein II;
RCC1_3,Regu,CUFF.39152.1
         (154 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g069030.1 | chromosome condensation regulator RCC1 repeat ...   241   2e-64
Medtr7g063440.3 | chromosome condensation regulator RCC1 repeat ...   184   4e-47
Medtr7g063440.1 | chromosome condensation regulator RCC1 repeat ...   182   9e-47
Medtr7g063440.2 | chromosome condensation regulator RCC1 repeat ...    79   2e-15

>Medtr3g069030.1 | chromosome condensation regulator RCC1 repeat
           protein | HC | chr3:30896246-30902315 | 20130731
          Length = 464

 Score =  241 bits (614), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 123/162 (75%), Positives = 131/162 (80%), Gaps = 13/162 (8%)

Query: 1   MNGDGNNEAMQVAKERMVYMWGYLPGALPQRTPLLTPVMVRAPAS--GYSWKDVCGGGCG 58
           MNG G        KE+MVYMWGYLPGALPQRTPLLTPV+VR PA+  GY+WKDV GGGCG
Sbjct: 1   MNGGGCE-----VKEKMVYMWGYLPGALPQRTPLLTPVLVRVPATSGGYNWKDVSGGGCG 55

Query: 59  FAMAISEPGKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTE-AIVKATAGWAHCVSVTD 117
           FAMAISE GKLITWGSTDDLGQSYVTSGKHGE PEPF LP E +IVKA + WAHCV+ TD
Sbjct: 56  FAMAISESGKLITWGSTDDLGQSYVTSGKHGETPEPFSLPNEVSIVKAASAWAHCVAATD 115

Query: 118 CGEVYTWGWKECVPSGKVFGEPPTGVSPEGQ-----SSFLTE 154
           CGEVYTWGWKEC+PSGKVFGE   GVSPE       SSFLTE
Sbjct: 116 CGEVYTWGWKECIPSGKVFGETSQGVSPEKDAQGKPSSFLTE 157


>Medtr7g063440.3 | chromosome condensation regulator RCC1 repeat
           protein | HC | chr7:23112105-23121349 | 20130731
          Length = 431

 Score =  184 bits (466), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 89/128 (69%), Positives = 101/128 (78%), Gaps = 4/128 (3%)

Query: 18  VYMWGYLPGALPQRTPLLTPVMVRAPAS---GYSWKDVCGGGCGFAMAISEPGKLITWGS 74
           VYMWGYLPGA  ++ P+L+P  VR   S   G SWKDVCGGGCGFA+AISE GKL+TWGS
Sbjct: 24  VYMWGYLPGASSEKAPILSPTAVRLTDSCFAGDSWKDVCGGGCGFAVAISEKGKLVTWGS 83

Query: 75  TDDLGQSYVTSGKHGEIPEPFPLPTEA-IVKATAGWAHCVSVTDCGEVYTWGWKECVPSG 133
           TDD  QSY+ SGKHGEIP  + LPTEA +VKA AGWAHC SVT+ G+VY WGWKECVPSG
Sbjct: 84  TDDENQSYLMSGKHGEIPGHYKLPTEASVVKAAAGWAHCASVTEDGDVYLWGWKECVPSG 143

Query: 134 KVFGEPPT 141
           KVF +  T
Sbjct: 144 KVFTDLIT 151


>Medtr7g063440.1 | chromosome condensation regulator RCC1 repeat
           protein | HC | chr7:23112105-23121349 | 20130731
          Length = 482

 Score =  182 bits (463), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 89/128 (69%), Positives = 101/128 (78%), Gaps = 4/128 (3%)

Query: 18  VYMWGYLPGALPQRTPLLTPVMVRAPAS---GYSWKDVCGGGCGFAMAISEPGKLITWGS 74
           VYMWGYLPGA  ++ P+L+P  VR   S   G SWKDVCGGGCGFA+AISE GKL+TWGS
Sbjct: 24  VYMWGYLPGASSEKAPILSPTAVRLTDSCFAGDSWKDVCGGGCGFAVAISEKGKLVTWGS 83

Query: 75  TDDLGQSYVTSGKHGEIPEPFPLPTEA-IVKATAGWAHCVSVTDCGEVYTWGWKECVPSG 133
           TDD  QSY+ SGKHGEIP  + LPTEA +VKA AGWAHC SVT+ G+VY WGWKECVPSG
Sbjct: 84  TDDENQSYLMSGKHGEIPGHYKLPTEASVVKAAAGWAHCASVTEDGDVYLWGWKECVPSG 143

Query: 134 KVFGEPPT 141
           KVF +  T
Sbjct: 144 KVFTDLIT 151


>Medtr7g063440.2 | chromosome condensation regulator RCC1 repeat
           protein | HC | chr7:23112105-23121349 | 20130731
          Length = 390

 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/53 (69%), Positives = 42/53 (79%), Gaps = 1/53 (1%)

Query: 90  EIPEPFPLPTEA-IVKATAGWAHCVSVTDCGEVYTWGWKECVPSGKVFGEPPT 141
           EIP  + LPTEA +VKA AGWAHC SVT+ G+VY WGWKECVPSGKVF +  T
Sbjct: 7   EIPGHYKLPTEASVVKAAAGWAHCASVTEDGDVYLWGWKECVPSGKVFTDLIT 59