Miyakogusa Predicted Gene

Lj2g3v2624110.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2624110.1 tr|D4N5G0|D4N5G0_SOYBN Alpha-form rubisco
activase OS=Glycine max GN=RCAalpha PE=2 SV=1,90.15,0,P-loop
containing nucleoside triphosphate hydrolases,NULL; seg,NULL;
AAA,ATPase, AAA-type, core; SUB,CUFF.40164.1
         (475 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g080450.1 | ribulose bisphosphate carboxylase/oxygenase ac...   887   0.0  
Medtr4g021210.1 | ribulose bisphosphate carboxylase/oxygenase ac...   811   0.0  
Medtr3g068030.1 | ribulose bisphosphate carboxylase/oxygenase ac...   785   0.0  
Medtr3g068030.2 | ribulose bisphosphate carboxylase/oxygenase ac...   767   0.0  
Medtr2g105480.1 | ribulose bisphosphate carboxylase/oxygenase ac...   323   3e-88
Medtr2g105480.3 | ribulose bisphosphate carboxylase/oxygenase ac...   292   4e-79
Medtr2g105480.2 | ribulose bisphosphate carboxylase/oxygenase ac...   244   2e-64

>Medtr5g080450.1 | ribulose bisphosphate carboxylase/oxygenase
           activase | HC | chr5:34438020-34433065 | 20130731
          Length = 476

 Score =  887 bits (2293), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/475 (88%), Positives = 445/475 (93%)

Query: 1   MAASVSTIGAVNGTPLSLNXXXXXXXXXXXXFFGSSLRKVNSRLPNSKVSNGSFKIVAAE 60
           M ASVS + AV+GTPLSLN            FFG+SL+KV SRLPN+KVS+G FKIVAAE
Sbjct: 1   MVASVSAVRAVSGTPLSLNSSGAVASVPSSSFFGTSLKKVTSRLPNTKVSSGRFKIVAAE 60

Query: 61  IDESQQTDKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPQGAGTHYAVMSSYEYLSTGL 120
           I+ES+QTDKDRW+GLAYD SDDQQDITRGKGMVD +FQAPQ +GTHYAVMSSYEY+STGL
Sbjct: 61  INESKQTDKDRWRGLAYDTSDDQQDITRGKGMVDTVFQAPQDSGTHYAVMSSYEYISTGL 120

Query: 121 RQYNFDNTMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF 180
           RQYN DNTMDGFYIAPAFMDKLVVHITKNF+TLPNIKVPLILGIWGGKGQGKSFQ ELVF
Sbjct: 121 RQYNLDNTMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQAELVF 180

Query: 181 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 240
           AKMGINPIMMSAGELESGNAGEPAKLIRQRYREA+DII+KGKMCCLFINDLDAGAGRMGG
Sbjct: 181 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDIIRKGKMCCLFINDLDAGAGRMGG 240

Query: 241 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGR 300
           TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKE+N RVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 241 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRDGR 300

Query: 301 MEKFYWAPTRDDRVGVCKGIFRTDNVPEEDVVKIVDTFPGQSIDFFGALRARVYDDEVRK 360
           MEKFYWAPTR+DR+GVCKGIFR DNVPEEDVVKIVDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 301 MEKFYWAPTREDRIGVCKGIFRHDNVPEEDVVKIVDTFPGQSIDFFGALRARVYDDEVRK 360

Query: 361 WISGVGIETIGKKLVNSKEGPPVFEQPKMTLAKLLEYGNMLVQEQENVKRVQLADKYLNE 420
           WI+GVGIETIGKKLVNSKEGPP F+QPKM+L KLLEYGNMLVQEQENVKRVQLADKYL  
Sbjct: 361 WIAGVGIETIGKKLVNSKEGPPTFDQPKMSLEKLLEYGNMLVQEQENVKRVQLADKYLEG 420

Query: 421 AALGDANEDSINRGTFYGKAAQQVNVPVPEGCTDPNAKNFDPTARSDDGTCLYTF 475
           AALGDAN+D+I  G+FYGKAAQQVN+P+PEGCTDPNAKNFDPTARSDDGTCLYTF
Sbjct: 421 AALGDANQDAIKSGSFYGKAAQQVNIPIPEGCTDPNAKNFDPTARSDDGTCLYTF 475


>Medtr4g021210.1 | ribulose bisphosphate carboxylase/oxygenase
           activase | HC | chr4:6855999-6852279 | 20130731
          Length = 476

 Score =  811 bits (2096), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/477 (80%), Positives = 425/477 (89%), Gaps = 3/477 (0%)

Query: 1   MAASVSTIGAVNGTPLSLNXXXXXXXXXXXXFFGSSLRKVNSRLPNSKVSNGSFKIVAAE 60
           MA SV+ +GA+N   L LN            FFG+SL+K  S + + K  +G+FK V+A+
Sbjct: 1   MATSVTIVGAINMAQLKLNGSSSGVPMTNSAFFGTSLKKARSAISSQKSLSGNFK-VSAK 59

Query: 61  ID--ESQQTDKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPQGAGTHYAVMSSYEYLST 118
           ID  E +QT KDRW GLAYD SDDQQDITRGKG VD +FQAP  AGTHYAVMSSY+Y+ST
Sbjct: 60  IDYNEEKQTSKDRWAGLAYDTSDDQQDITRGKGKVDSVFQAPMDAGTHYAVMSSYDYIST 119

Query: 119 GLRQYNFDNTMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCEL 178
           GLRQYN DNT+DG YIAPAFMDKLVVHITKNF+ LPNIK+PLILGIWGGKGQGKSFQCEL
Sbjct: 120 GLRQYNMDNTVDGLYIAPAFMDKLVVHITKNFLNLPNIKIPLILGIWGGKGQGKSFQCEL 179

Query: 179 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 238
           VFAKMGI+PIMMSAGELESGNAGEPAKLIRQRYREA+DII+KGKMCCLFINDLDAGAGRM
Sbjct: 180 VFAKMGISPIMMSAGELESGNAGEPAKLIRQRYREASDIIRKGKMCCLFINDLDAGAGRM 239

Query: 239 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRD 298
           GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKE+N RVPIIVTGNDFSTLYAPLIRD
Sbjct: 240 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRD 299

Query: 299 GRMEKFYWAPTRDDRVGVCKGIFRTDNVPEEDVVKIVDTFPGQSIDFFGALRARVYDDEV 358
           GRMEKFYWAPTRDDRVGVC+GIFRTD VP++D+VKIVDTFPGQSIDFFGALRARVYDDEV
Sbjct: 300 GRMEKFYWAPTRDDRVGVCQGIFRTDGVPKDDIVKIVDTFPGQSIDFFGALRARVYDDEV 359

Query: 359 RKWISGVGIETIGKKLVNSKEGPPVFEQPKMTLAKLLEYGNMLVQEQENVKRVQLADKYL 418
           R WISG+G+E+IGK+LVNSKEGPP FEQPKMT+ KLLEYGNMLVQEQENVKRVQLADKYL
Sbjct: 360 RNWISGIGVESIGKRLVNSKEGPPTFEQPKMTIDKLLEYGNMLVQEQENVKRVQLADKYL 419

Query: 419 NEAALGDANEDSINRGTFYGKAAQQVNVPVPEGCTDPNAKNFDPTARSDDGTCLYTF 475
           +EAALGDAN+D+I  G FYG+ AQQV +PV EGC DP+A+N+DPTARSDDG+C YTF
Sbjct: 420 SEAALGDANDDAIKTGNFYGQGAQQVPLPVQEGCADPSAENYDPTARSDDGSCTYTF 476


>Medtr3g068030.1 | ribulose bisphosphate carboxylase/oxygenase
           activase | HC | chr3:30668380-30664861 | 20130731
          Length = 436

 Score =  785 bits (2026), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/437 (86%), Positives = 402/437 (91%), Gaps = 2/437 (0%)

Query: 1   MAASVSTIGAVNGTPLSLNXXXXXX-XXXXXXFFGSSLRKVNSRLPNSKVSNGSFKIVAA 59
           MAASVST+GAV  TP+SLN             FFG+SL+K+ +RLPN+KVS+GSFK+ A 
Sbjct: 1   MAASVSTVGAVK-TPMSLNGSVVAGPTVSNSAFFGTSLKKLTARLPNTKVSSGSFKVFAK 59

Query: 60  EIDESQQTDKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPQGAGTHYAVMSSYEYLSTG 119
           EIDE +QTD DRW+GLAYDISDDQQDITRGKGMVD +FQAPQ  GTHYAVMSSYEYLSTG
Sbjct: 60  EIDEGKQTDGDRWRGLAYDISDDQQDITRGKGMVDSVFQAPQDTGTHYAVMSSYEYLSTG 119

Query: 120 LRQYNFDNTMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELV 179
           L+QYNFDNTMDGFYIAPAFMDKLVVHITKNF+TLPNIKVPLILG+WGGKGQGKSFQ ELV
Sbjct: 120 LKQYNFDNTMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSFQAELV 179

Query: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 239
           FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLFINDLDAGAGRMG
Sbjct: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRMG 239

Query: 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDG 299
           GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDN RVPIIVTGNDFSTLYAPLIRDG
Sbjct: 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLIRDG 299

Query: 300 RMEKFYWAPTRDDRVGVCKGIFRTDNVPEEDVVKIVDTFPGQSIDFFGALRARVYDDEVR 359
           RMEKFYWAPTR+DR+GVC GIFR DN+ ++D+VKIVDTFPGQSIDFFGALRARVYDDEVR
Sbjct: 300 RMEKFYWAPTREDRIGVCIGIFRHDNIAKDDIVKIVDTFPGQSIDFFGALRARVYDDEVR 359

Query: 360 KWISGVGIETIGKKLVNSKEGPPVFEQPKMTLAKLLEYGNMLVQEQENVKRVQLADKYLN 419
           KW+SGVGIETIGKKLVNSK+GPPVFEQPKMTL KLLEYGNMLV EQENVKRVQLADKYL 
Sbjct: 360 KWVSGVGIETIGKKLVNSKDGPPVFEQPKMTLEKLLEYGNMLVSEQENVKRVQLADKYLE 419

Query: 420 EAALGDANEDSINRGTF 436
            AALGDAN+D+I  G F
Sbjct: 420 GAALGDANQDAIKEGKF 436


>Medtr3g068030.2 | ribulose bisphosphate carboxylase/oxygenase
           activase | HC | chr3:30668031-30664861 | 20130731
          Length = 422

 Score =  767 bits (1981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/405 (89%), Positives = 385/405 (95%)

Query: 32  FFGSSLRKVNSRLPNSKVSNGSFKIVAAEIDESQQTDKDRWKGLAYDISDDQQDITRGKG 91
           FFG+SL+K+ +RLPN+KVS+GSFK+ A EIDE +QTD DRW+GLAYDISDDQQDITRGKG
Sbjct: 18  FFGTSLKKLTARLPNTKVSSGSFKVFAKEIDEGKQTDGDRWRGLAYDISDDQQDITRGKG 77

Query: 92  MVDPLFQAPQGAGTHYAVMSSYEYLSTGLRQYNFDNTMDGFYIAPAFMDKLVVHITKNFM 151
           MVD +FQAPQ  GTHYAVMSSYEYLSTGL+QYNFDNTMDGFYIAPAFMDKLVVHITKNF+
Sbjct: 78  MVDSVFQAPQDTGTHYAVMSSYEYLSTGLKQYNFDNTMDGFYIAPAFMDKLVVHITKNFL 137

Query: 152 TLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 211
           TLPNIKVPLILG+WGGKGQGKSFQ ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY
Sbjct: 138 TLPNIKVPLILGVWGGKGQGKSFQAELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 197

Query: 212 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 271
           REAADII+KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY
Sbjct: 198 REAADIIRKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 257

Query: 272 NKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPEEDV 331
           NKEDN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVC GIFR DN+ ++D+
Sbjct: 258 NKEDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFRHDNIAKDDI 317

Query: 332 VKIVDTFPGQSIDFFGALRARVYDDEVRKWISGVGIETIGKKLVNSKEGPPVFEQPKMTL 391
           VKIVDTFPGQSIDFFGALRARVYDDEVRKW+SGVGIETIGKKLVNSK+GPPVFEQPKMTL
Sbjct: 318 VKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGVGIETIGKKLVNSKDGPPVFEQPKMTL 377

Query: 392 AKLLEYGNMLVQEQENVKRVQLADKYLNEAALGDANEDSINRGTF 436
            KLLEYGNMLV EQENVKRVQLADKYL  AALGDAN+D+I  G F
Sbjct: 378 EKLLEYGNMLVSEQENVKRVQLADKYLEGAALGDANQDAIKEGKF 422


>Medtr2g105480.1 | ribulose bisphosphate carboxylase/oxygenase
           activase | HC | chr2:45485203-45480838 | 20130731
          Length = 418

 Score =  323 bits (827), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 155/293 (52%), Positives = 213/293 (72%), Gaps = 7/293 (2%)

Query: 132 FYIAPAFMDKLVVHITKNFMT-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190
           +YIAP FMDK+V HITKN+++ L N KVPLILGIWGGKGQGK+FQ EL+F  MG+ P++M
Sbjct: 122 YYIAPLFMDKVVTHITKNYLSHLLNAKVPLILGIWGGKGQGKTFQTELIFRAMGVEPVIM 181

Query: 191 SAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 249
           SAGELES NAGEP +LIR+RYR A+ +++ +GKM CL IND+DAG GR G  TQ TVNNQ
Sbjct: 182 SAGELESENAGEPGRLIRERYRTASKVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 240

Query: 250 MVNATLMNIADNPTNVQLPGMYNKED-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
           +V  TLMN+ DNPT V +   + + D   R+PIIVTGND ST+YAPLIRDGRM+KFYW P
Sbjct: 241 IVVGTLMNLCDNPTRVSIGQDWREADVTNRIPIIVTGNDLSTIYAPLIRDGRMDKFYWQP 300

Query: 309 TRDDRVGVCKGIFRTDNVPEEDVVKIVDTFPGQSIDFFGALRARVYDDEVRKWISGV-GI 367
            ++D + + + ++  D +  ++V K+V TFP Q++DF+GALR+R YD  + KW+  + G 
Sbjct: 301 NQEDILNIVQRMYEKDGISRDEVEKVVKTFPNQALDFYGALRSRTYDRSILKWVDDIGGA 360

Query: 368 ETIGKKLVNSK--EGPPVFEQPKMTLAKLLEYGNMLVQEQENVKRVQLADKYL 418
           E+   K +  +  +  PVF  P+ T+  LLE G  L++EQ+ +   +L+ +Y+
Sbjct: 361 ESFASKFLKRRKDQNLPVFIPPEQTIDALLESGYSLLKEQQLIMETKLSKEYM 413


>Medtr2g105480.3 | ribulose bisphosphate carboxylase/oxygenase
           activase | HC | chr2:45485184-45481680 | 20130731
          Length = 353

 Score =  292 bits (748), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 137/232 (59%), Positives = 179/232 (77%), Gaps = 4/232 (1%)

Query: 132 FYIAPAFMDKLVVHITKNFMT-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190
           +YIAP FMDK+V HITKN+++ L N KVPLILGIWGGKGQGK+FQ EL+F  MG+ P++M
Sbjct: 122 YYIAPLFMDKVVTHITKNYLSHLLNAKVPLILGIWGGKGQGKTFQTELIFRAMGVEPVIM 181

Query: 191 SAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 249
           SAGELES NAGEP +LIR+RYR A+ +++ +GKM CL IND+DAG GR G  TQ TVNNQ
Sbjct: 182 SAGELESENAGEPGRLIRERYRTASKVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 240

Query: 250 MVNATLMNIADNPTNVQLPGMYNKED-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
           +V  TLMN+ DNPT V +   + + D   R+PIIVTGND ST+YAPLIRDGRM+KFYW P
Sbjct: 241 IVVGTLMNLCDNPTRVSIGQDWREADVTNRIPIIVTGNDLSTIYAPLIRDGRMDKFYWQP 300

Query: 309 TRDDRVGVCKGIFRTDNVPEEDVVKIVDTFPGQSIDFFGALRARVYDDEVRK 360
            ++D + + + ++  D +  ++V K+V TFP Q++DF+GALR+R YD  + K
Sbjct: 301 NQEDILNIVQRMYEKDGISRDEVEKVVKTFPNQALDFYGALRSRTYDRSILK 352


>Medtr2g105480.2 | ribulose bisphosphate carboxylase/oxygenase
           activase | HC | chr2:45485184-45482533 | 20130731
          Length = 315

 Score =  244 bits (622), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 117/179 (65%), Positives = 143/179 (79%), Gaps = 4/179 (2%)

Query: 132 FYIAPAFMDKLVVHITKNFMT-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190
           +YIAP FMDK+V HITKN+++ L N KVPLILGIWGGKGQGK+FQ EL+F  MG+ P++M
Sbjct: 122 YYIAPLFMDKVVTHITKNYLSHLLNAKVPLILGIWGGKGQGKTFQTELIFRAMGVEPVIM 181

Query: 191 SAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 249
           SAGELES NAGEP +LIR+RYR A+ +++ +GKM CL IND+DAG GR  G TQ TVNNQ
Sbjct: 182 SAGELESENAGEPGRLIRERYRTASKVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQ 240

Query: 250 MVNATLMNIADNPTNVQLPGMYNKED-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA 307
           +V  TLMN+ DNPT V +   + + D   R+PIIVTGND ST+YAPLIRDGRM+KFYW 
Sbjct: 241 IVVGTLMNLCDNPTRVSIGQDWREADVTNRIPIIVTGNDLSTIYAPLIRDGRMDKFYWC 299