Miyakogusa Predicted Gene
- Lj2g3v2624110.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v2624110.1 tr|D4N5G0|D4N5G0_SOYBN Alpha-form rubisco
activase OS=Glycine max GN=RCAalpha PE=2 SV=1,90.15,0,P-loop
containing nucleoside triphosphate hydrolases,NULL; seg,NULL;
AAA,ATPase, AAA-type, core; SUB,CUFF.40164.1
(475 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g080450.1 | ribulose bisphosphate carboxylase/oxygenase ac... 887 0.0
Medtr4g021210.1 | ribulose bisphosphate carboxylase/oxygenase ac... 811 0.0
Medtr3g068030.1 | ribulose bisphosphate carboxylase/oxygenase ac... 785 0.0
Medtr3g068030.2 | ribulose bisphosphate carboxylase/oxygenase ac... 767 0.0
Medtr2g105480.1 | ribulose bisphosphate carboxylase/oxygenase ac... 323 3e-88
Medtr2g105480.3 | ribulose bisphosphate carboxylase/oxygenase ac... 292 4e-79
Medtr2g105480.2 | ribulose bisphosphate carboxylase/oxygenase ac... 244 2e-64
>Medtr5g080450.1 | ribulose bisphosphate carboxylase/oxygenase
activase | HC | chr5:34438020-34433065 | 20130731
Length = 476
Score = 887 bits (2293), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/475 (88%), Positives = 445/475 (93%)
Query: 1 MAASVSTIGAVNGTPLSLNXXXXXXXXXXXXFFGSSLRKVNSRLPNSKVSNGSFKIVAAE 60
M ASVS + AV+GTPLSLN FFG+SL+KV SRLPN+KVS+G FKIVAAE
Sbjct: 1 MVASVSAVRAVSGTPLSLNSSGAVASVPSSSFFGTSLKKVTSRLPNTKVSSGRFKIVAAE 60
Query: 61 IDESQQTDKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPQGAGTHYAVMSSYEYLSTGL 120
I+ES+QTDKDRW+GLAYD SDDQQDITRGKGMVD +FQAPQ +GTHYAVMSSYEY+STGL
Sbjct: 61 INESKQTDKDRWRGLAYDTSDDQQDITRGKGMVDTVFQAPQDSGTHYAVMSSYEYISTGL 120
Query: 121 RQYNFDNTMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF 180
RQYN DNTMDGFYIAPAFMDKLVVHITKNF+TLPNIKVPLILGIWGGKGQGKSFQ ELVF
Sbjct: 121 RQYNLDNTMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQAELVF 180
Query: 181 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 240
AKMGINPIMMSAGELESGNAGEPAKLIRQRYREA+DII+KGKMCCLFINDLDAGAGRMGG
Sbjct: 181 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDIIRKGKMCCLFINDLDAGAGRMGG 240
Query: 241 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGR 300
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKE+N RVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 241 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRDGR 300
Query: 301 MEKFYWAPTRDDRVGVCKGIFRTDNVPEEDVVKIVDTFPGQSIDFFGALRARVYDDEVRK 360
MEKFYWAPTR+DR+GVCKGIFR DNVPEEDVVKIVDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 301 MEKFYWAPTREDRIGVCKGIFRHDNVPEEDVVKIVDTFPGQSIDFFGALRARVYDDEVRK 360
Query: 361 WISGVGIETIGKKLVNSKEGPPVFEQPKMTLAKLLEYGNMLVQEQENVKRVQLADKYLNE 420
WI+GVGIETIGKKLVNSKEGPP F+QPKM+L KLLEYGNMLVQEQENVKRVQLADKYL
Sbjct: 361 WIAGVGIETIGKKLVNSKEGPPTFDQPKMSLEKLLEYGNMLVQEQENVKRVQLADKYLEG 420
Query: 421 AALGDANEDSINRGTFYGKAAQQVNVPVPEGCTDPNAKNFDPTARSDDGTCLYTF 475
AALGDAN+D+I G+FYGKAAQQVN+P+PEGCTDPNAKNFDPTARSDDGTCLYTF
Sbjct: 421 AALGDANQDAIKSGSFYGKAAQQVNIPIPEGCTDPNAKNFDPTARSDDGTCLYTF 475
>Medtr4g021210.1 | ribulose bisphosphate carboxylase/oxygenase
activase | HC | chr4:6855999-6852279 | 20130731
Length = 476
Score = 811 bits (2096), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/477 (80%), Positives = 425/477 (89%), Gaps = 3/477 (0%)
Query: 1 MAASVSTIGAVNGTPLSLNXXXXXXXXXXXXFFGSSLRKVNSRLPNSKVSNGSFKIVAAE 60
MA SV+ +GA+N L LN FFG+SL+K S + + K +G+FK V+A+
Sbjct: 1 MATSVTIVGAINMAQLKLNGSSSGVPMTNSAFFGTSLKKARSAISSQKSLSGNFK-VSAK 59
Query: 61 ID--ESQQTDKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPQGAGTHYAVMSSYEYLST 118
ID E +QT KDRW GLAYD SDDQQDITRGKG VD +FQAP AGTHYAVMSSY+Y+ST
Sbjct: 60 IDYNEEKQTSKDRWAGLAYDTSDDQQDITRGKGKVDSVFQAPMDAGTHYAVMSSYDYIST 119
Query: 119 GLRQYNFDNTMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCEL 178
GLRQYN DNT+DG YIAPAFMDKLVVHITKNF+ LPNIK+PLILGIWGGKGQGKSFQCEL
Sbjct: 120 GLRQYNMDNTVDGLYIAPAFMDKLVVHITKNFLNLPNIKIPLILGIWGGKGQGKSFQCEL 179
Query: 179 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 238
VFAKMGI+PIMMSAGELESGNAGEPAKLIRQRYREA+DII+KGKMCCLFINDLDAGAGRM
Sbjct: 180 VFAKMGISPIMMSAGELESGNAGEPAKLIRQRYREASDIIRKGKMCCLFINDLDAGAGRM 239
Query: 239 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRD 298
GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKE+N RVPIIVTGNDFSTLYAPLIRD
Sbjct: 240 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRD 299
Query: 299 GRMEKFYWAPTRDDRVGVCKGIFRTDNVPEEDVVKIVDTFPGQSIDFFGALRARVYDDEV 358
GRMEKFYWAPTRDDRVGVC+GIFRTD VP++D+VKIVDTFPGQSIDFFGALRARVYDDEV
Sbjct: 300 GRMEKFYWAPTRDDRVGVCQGIFRTDGVPKDDIVKIVDTFPGQSIDFFGALRARVYDDEV 359
Query: 359 RKWISGVGIETIGKKLVNSKEGPPVFEQPKMTLAKLLEYGNMLVQEQENVKRVQLADKYL 418
R WISG+G+E+IGK+LVNSKEGPP FEQPKMT+ KLLEYGNMLVQEQENVKRVQLADKYL
Sbjct: 360 RNWISGIGVESIGKRLVNSKEGPPTFEQPKMTIDKLLEYGNMLVQEQENVKRVQLADKYL 419
Query: 419 NEAALGDANEDSINRGTFYGKAAQQVNVPVPEGCTDPNAKNFDPTARSDDGTCLYTF 475
+EAALGDAN+D+I G FYG+ AQQV +PV EGC DP+A+N+DPTARSDDG+C YTF
Sbjct: 420 SEAALGDANDDAIKTGNFYGQGAQQVPLPVQEGCADPSAENYDPTARSDDGSCTYTF 476
>Medtr3g068030.1 | ribulose bisphosphate carboxylase/oxygenase
activase | HC | chr3:30668380-30664861 | 20130731
Length = 436
Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/437 (86%), Positives = 402/437 (91%), Gaps = 2/437 (0%)
Query: 1 MAASVSTIGAVNGTPLSLNXXXXXX-XXXXXXFFGSSLRKVNSRLPNSKVSNGSFKIVAA 59
MAASVST+GAV TP+SLN FFG+SL+K+ +RLPN+KVS+GSFK+ A
Sbjct: 1 MAASVSTVGAVK-TPMSLNGSVVAGPTVSNSAFFGTSLKKLTARLPNTKVSSGSFKVFAK 59
Query: 60 EIDESQQTDKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPQGAGTHYAVMSSYEYLSTG 119
EIDE +QTD DRW+GLAYDISDDQQDITRGKGMVD +FQAPQ GTHYAVMSSYEYLSTG
Sbjct: 60 EIDEGKQTDGDRWRGLAYDISDDQQDITRGKGMVDSVFQAPQDTGTHYAVMSSYEYLSTG 119
Query: 120 LRQYNFDNTMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELV 179
L+QYNFDNTMDGFYIAPAFMDKLVVHITKNF+TLPNIKVPLILG+WGGKGQGKSFQ ELV
Sbjct: 120 LKQYNFDNTMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSFQAELV 179
Query: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 239
FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLFINDLDAGAGRMG
Sbjct: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRMG 239
Query: 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDG 299
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDN RVPIIVTGNDFSTLYAPLIRDG
Sbjct: 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLIRDG 299
Query: 300 RMEKFYWAPTRDDRVGVCKGIFRTDNVPEEDVVKIVDTFPGQSIDFFGALRARVYDDEVR 359
RMEKFYWAPTR+DR+GVC GIFR DN+ ++D+VKIVDTFPGQSIDFFGALRARVYDDEVR
Sbjct: 300 RMEKFYWAPTREDRIGVCIGIFRHDNIAKDDIVKIVDTFPGQSIDFFGALRARVYDDEVR 359
Query: 360 KWISGVGIETIGKKLVNSKEGPPVFEQPKMTLAKLLEYGNMLVQEQENVKRVQLADKYLN 419
KW+SGVGIETIGKKLVNSK+GPPVFEQPKMTL KLLEYGNMLV EQENVKRVQLADKYL
Sbjct: 360 KWVSGVGIETIGKKLVNSKDGPPVFEQPKMTLEKLLEYGNMLVSEQENVKRVQLADKYLE 419
Query: 420 EAALGDANEDSINRGTF 436
AALGDAN+D+I G F
Sbjct: 420 GAALGDANQDAIKEGKF 436
>Medtr3g068030.2 | ribulose bisphosphate carboxylase/oxygenase
activase | HC | chr3:30668031-30664861 | 20130731
Length = 422
Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/405 (89%), Positives = 385/405 (95%)
Query: 32 FFGSSLRKVNSRLPNSKVSNGSFKIVAAEIDESQQTDKDRWKGLAYDISDDQQDITRGKG 91
FFG+SL+K+ +RLPN+KVS+GSFK+ A EIDE +QTD DRW+GLAYDISDDQQDITRGKG
Sbjct: 18 FFGTSLKKLTARLPNTKVSSGSFKVFAKEIDEGKQTDGDRWRGLAYDISDDQQDITRGKG 77
Query: 92 MVDPLFQAPQGAGTHYAVMSSYEYLSTGLRQYNFDNTMDGFYIAPAFMDKLVVHITKNFM 151
MVD +FQAPQ GTHYAVMSSYEYLSTGL+QYNFDNTMDGFYIAPAFMDKLVVHITKNF+
Sbjct: 78 MVDSVFQAPQDTGTHYAVMSSYEYLSTGLKQYNFDNTMDGFYIAPAFMDKLVVHITKNFL 137
Query: 152 TLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 211
TLPNIKVPLILG+WGGKGQGKSFQ ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY
Sbjct: 138 TLPNIKVPLILGVWGGKGQGKSFQAELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 197
Query: 212 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 271
REAADII+KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY
Sbjct: 198 REAADIIRKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 257
Query: 272 NKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPEEDV 331
NKEDN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVC GIFR DN+ ++D+
Sbjct: 258 NKEDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFRHDNIAKDDI 317
Query: 332 VKIVDTFPGQSIDFFGALRARVYDDEVRKWISGVGIETIGKKLVNSKEGPPVFEQPKMTL 391
VKIVDTFPGQSIDFFGALRARVYDDEVRKW+SGVGIETIGKKLVNSK+GPPVFEQPKMTL
Sbjct: 318 VKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGVGIETIGKKLVNSKDGPPVFEQPKMTL 377
Query: 392 AKLLEYGNMLVQEQENVKRVQLADKYLNEAALGDANEDSINRGTF 436
KLLEYGNMLV EQENVKRVQLADKYL AALGDAN+D+I G F
Sbjct: 378 EKLLEYGNMLVSEQENVKRVQLADKYLEGAALGDANQDAIKEGKF 422
>Medtr2g105480.1 | ribulose bisphosphate carboxylase/oxygenase
activase | HC | chr2:45485203-45480838 | 20130731
Length = 418
Score = 323 bits (827), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 155/293 (52%), Positives = 213/293 (72%), Gaps = 7/293 (2%)
Query: 132 FYIAPAFMDKLVVHITKNFMT-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190
+YIAP FMDK+V HITKN+++ L N KVPLILGIWGGKGQGK+FQ EL+F MG+ P++M
Sbjct: 122 YYIAPLFMDKVVTHITKNYLSHLLNAKVPLILGIWGGKGQGKTFQTELIFRAMGVEPVIM 181
Query: 191 SAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 249
SAGELES NAGEP +LIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ
Sbjct: 182 SAGELESENAGEPGRLIRERYRTASKVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 240
Query: 250 MVNATLMNIADNPTNVQLPGMYNKED-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
+V TLMN+ DNPT V + + + D R+PIIVTGND ST+YAPLIRDGRM+KFYW P
Sbjct: 241 IVVGTLMNLCDNPTRVSIGQDWREADVTNRIPIIVTGNDLSTIYAPLIRDGRMDKFYWQP 300
Query: 309 TRDDRVGVCKGIFRTDNVPEEDVVKIVDTFPGQSIDFFGALRARVYDDEVRKWISGV-GI 367
++D + + + ++ D + ++V K+V TFP Q++DF+GALR+R YD + KW+ + G
Sbjct: 301 NQEDILNIVQRMYEKDGISRDEVEKVVKTFPNQALDFYGALRSRTYDRSILKWVDDIGGA 360
Query: 368 ETIGKKLVNSK--EGPPVFEQPKMTLAKLLEYGNMLVQEQENVKRVQLADKYL 418
E+ K + + + PVF P+ T+ LLE G L++EQ+ + +L+ +Y+
Sbjct: 361 ESFASKFLKRRKDQNLPVFIPPEQTIDALLESGYSLLKEQQLIMETKLSKEYM 413
>Medtr2g105480.3 | ribulose bisphosphate carboxylase/oxygenase
activase | HC | chr2:45485184-45481680 | 20130731
Length = 353
Score = 292 bits (748), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 137/232 (59%), Positives = 179/232 (77%), Gaps = 4/232 (1%)
Query: 132 FYIAPAFMDKLVVHITKNFMT-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190
+YIAP FMDK+V HITKN+++ L N KVPLILGIWGGKGQGK+FQ EL+F MG+ P++M
Sbjct: 122 YYIAPLFMDKVVTHITKNYLSHLLNAKVPLILGIWGGKGQGKTFQTELIFRAMGVEPVIM 181
Query: 191 SAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 249
SAGELES NAGEP +LIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ
Sbjct: 182 SAGELESENAGEPGRLIRERYRTASKVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 240
Query: 250 MVNATLMNIADNPTNVQLPGMYNKED-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
+V TLMN+ DNPT V + + + D R+PIIVTGND ST+YAPLIRDGRM+KFYW P
Sbjct: 241 IVVGTLMNLCDNPTRVSIGQDWREADVTNRIPIIVTGNDLSTIYAPLIRDGRMDKFYWQP 300
Query: 309 TRDDRVGVCKGIFRTDNVPEEDVVKIVDTFPGQSIDFFGALRARVYDDEVRK 360
++D + + + ++ D + ++V K+V TFP Q++DF+GALR+R YD + K
Sbjct: 301 NQEDILNIVQRMYEKDGISRDEVEKVVKTFPNQALDFYGALRSRTYDRSILK 352
>Medtr2g105480.2 | ribulose bisphosphate carboxylase/oxygenase
activase | HC | chr2:45485184-45482533 | 20130731
Length = 315
Score = 244 bits (622), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 117/179 (65%), Positives = 143/179 (79%), Gaps = 4/179 (2%)
Query: 132 FYIAPAFMDKLVVHITKNFMT-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190
+YIAP FMDK+V HITKN+++ L N KVPLILGIWGGKGQGK+FQ EL+F MG+ P++M
Sbjct: 122 YYIAPLFMDKVVTHITKNYLSHLLNAKVPLILGIWGGKGQGKTFQTELIFRAMGVEPVIM 181
Query: 191 SAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 249
SAGELES NAGEP +LIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ
Sbjct: 182 SAGELESENAGEPGRLIRERYRTASKVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQ 240
Query: 250 MVNATLMNIADNPTNVQLPGMYNKED-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA 307
+V TLMN+ DNPT V + + + D R+PIIVTGND ST+YAPLIRDGRM+KFYW
Sbjct: 241 IVVGTLMNLCDNPTRVSIGQDWREADVTNRIPIIVTGNDLSTIYAPLIRDGRMDKFYWC 299