Miyakogusa Predicted Gene

Lj2g3v2599880.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2599880.1 Non Characterized Hit- tr|K2GZJ7|K2GZJ7_9BACT
Uncharacterized protein OS=uncultured bacterium
(gcode,30.4,5e-19,FtsJ,Ribosomal RNA methyltransferase FtsJ domain;
S-adenosyl-L-methionine-dependent methyltransferas,CUFF.39135.1
         (241 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g080020.1 | ribosomal RNA large subunit methyltransferase ...   362   e-100
Medtr4g078640.1 | adoMet-dependent rRNA methyltransferase Spb1 |...    83   2e-16
Medtr2g013490.1 | ribosomal RNA large subunit methyltransferase ...    72   4e-13
Medtr4g070380.1 | adoMet-dependent rRNA methyltransferase Spb1 |...    71   1e-12

>Medtr5g080020.1 | ribosomal RNA large subunit methyltransferase |
           HC | chr5:34249444-34252337 | 20130731
          Length = 238

 Score =  362 bits (928), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 182/240 (75%), Positives = 198/240 (82%), Gaps = 3/240 (1%)

Query: 1   MGASGAPDFYYKEAQRLGYVARSAFKLLQIQKHSNIIKSGSSVLDLGCAPGSWLQVACQS 60
           M  SGAPDF+YKEAQRLGYVARSAFKL+QIQK   +IK GSSVLDLGCAPGSWLQVACQS
Sbjct: 1   MAKSGAPDFFYKEAQRLGYVARSAFKLVQIQKQHKLIKPGSSVLDLGCAPGSWLQVACQS 60

Query: 61  LGPLQHGGSVLGIDVKKVKVPPVHCDSRVHTIAADVMTLSKHQLRALSPKQKGFSVILSD 120
           LGP  +GGSVLGID KKVKVP  HCDSRV T+AADVMTL K QLR LSPKQKGFSVILSD
Sbjct: 61  LGPFHNGGSVLGIDHKKVKVPTSHCDSRVKTVAADVMTLPKQQLRDLSPKQKGFSVILSD 120

Query: 121 MCPSVSGVTTKDAALSVELGMRALDLAVGXXXXXXXXXXXXXXYIREEQSVDDPSGSDDK 180
           MCP VSG+TTKDAALS ELGMRALDLAVG               ++E     DPSG+DD 
Sbjct: 121 MCPLVSGITTKDAALSFELGMRALDLAVGKVASVCNSDGDNLDEVKERC---DPSGADDG 177

Query: 181 GVLRVGGNLIIKLLESEDSKEISQICKPLFRKSSWLRPKATRPSSREIYLICQGLKPDAK 240
           G+LRVGG+L++KLLESED+KEI+QICKPLF KS WLRPKATRPSSREIYLICQGLK + K
Sbjct: 178 GLLRVGGHLVVKLLESEDAKEINQICKPLFTKSVWLRPKATRPSSREIYLICQGLKSEIK 237


>Medtr4g078640.1 | adoMet-dependent rRNA methyltransferase Spb1 | HC
           | chr4:30378623-30372127 | 20130731
          Length = 868

 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 101/235 (42%), Gaps = 59/235 (25%)

Query: 8   DFYYKEAQRLGYVARSAFKLLQIQKHSNIIKSGSSVLDLGCAPGSWLQVACQSLGPLQHG 67
           D YY  A+  GY +R+++KL+QI    + ++S  SVLDL  APG W+QVA Q + P+ H 
Sbjct: 13  DKYYYLAKEHGYCSRASWKLVQINSKFHFLESSRSVLDLCAAPGGWMQVAVQRV-PVDH- 70

Query: 68  GSVLGIDVKKVK-----------VPPVHCDSRVHTIAADVMTLSKHQLRALSPKQKGFSV 116
             V+G+D+  +K           +    C SRV  I      ++++  RA       F V
Sbjct: 71  -LVIGVDLTPIKPIRGAIAIQEDITRPECKSRVRKI------MNENGYRA-------FDV 116

Query: 117 ILSDMCPSVSGVTTKDAALSVELGMRALDLAVGXXXXXXXXXXXXXXYIREEQSVDDPSG 176
           IL D  P+V G   ++A     L + A+ LA                             
Sbjct: 117 ILHDGSPNVGGAWAQEATSQNSLVIDAIKLAT---------------------------- 148

Query: 177 SDDKGVLRVGGNLIIKLLESEDSKEISQICKPLFRKSSWLRPKATRPSSREIYLI 231
                 L   G  + K+  S+D   +    K LF K    +P A+R  S EIY++
Sbjct: 149 ----QFLAPKGTFVTKVFRSQDYNSVVWCMKKLFEKVEVEKPPASRSESAEIYIL 199


>Medtr2g013490.1 | ribosomal RNA large subunit methyltransferase |
           HC | chr2:3638913-3632977 | 20130731
          Length = 316

 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 98/238 (41%), Gaps = 44/238 (18%)

Query: 8   DFYYKEAQRLGYVARSAFKLLQIQKHSNIIKSGSSVLDLGCAPGSWLQVACQSLGPLQHG 67
           D YY++A+  G+ ARSAFKLLQI +  NI +    V+DL  APGSW QV  + L    + 
Sbjct: 10  DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKL----YL 65

Query: 68  GSVLGIDVKKVKVP--------PVHCDSRVHTIAADVMTLSKHQLRALSPKQKGFSVILS 119
            + L  D K   +P        P+     V  +  D+      ++          ++++ 
Sbjct: 66  PAKLAPDAKDENLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKANLVVC 125

Query: 120 DMCPSVSGVTTKDAALSVELGMRALDLAVGXXXXXXXXXXXXXXYIREEQSVDDPSGSDD 179
           D  P V+G+   D  +  +L +  L +                                 
Sbjct: 126 DGAPDVTGLHDMDEFVQSQLILAGLTIVT------------------------------- 154

Query: 180 KGVLRVGGNLIIKLLESEDSKEISQICKPLFRKSSWLRPKATRPSSREIYLICQGLKP 237
             VL+ GG  I K+   +D+  +    K  F   ++ +PK++R SS E + +C+   P
Sbjct: 155 -HVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYSP 211


>Medtr4g070380.1 | adoMet-dependent rRNA methyltransferase Spb1 | HC
           | chr4:26521079-26516055 | 20130731
          Length = 780

 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 99/225 (44%), Gaps = 43/225 (19%)

Query: 10  YYKEAQRLGYVARSAFKLLQIQKHSNIIKSGSSVLDLGCAPGSWLQVACQSLGPLQHGGS 69
           +Y  A+  GY  R+++KL+Q+    + ++S  +VL+L  APG W QVA Q + P+ H   
Sbjct: 15  FYFLAKEHGYRCRASWKLIQLNSKFHFLESSCAVLNLCAAPGGWTQVAVQRV-PVDH--L 71

Query: 70  VLGIDVKKVKVPPVHCDSRVHTIAADVMTLS-KHQLRALSPKQ--KGFSVILSDMCPSVS 126
           V+G+D+  +K  P+     V +I  D+     + ++R +  +     F VIL D  P+V 
Sbjct: 72  VIGVDLAPMK--PIRG---VISIQEDITRPECRSRVRKIMNENGYSAFDVILHDGSPNVG 126

Query: 127 GVTTKDAALSVELGMRALDLAVGXXXXXXXXXXXXXXYIREEQSVDDPSGSDDKGVLRVG 186
           G   ++A     L + A+ LA                                   L   
Sbjct: 127 GAWAQEATTQNSLVIDAVKLAT--------------------------------QFLAPK 154

Query: 187 GNLIIKLLESEDSKEISQICKPLFRKSSWLRPKATRPSSREIYLI 231
           G  + K+  S+D   +    K LF K    +P A+R  S EIYL+
Sbjct: 155 GTFVTKVFRSQDYNSVVWCLKKLFEKVEVEKPPASRSESAEIYLL 199