Miyakogusa Predicted Gene

Lj2g3v2587680.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2587680.2 tr|G7KBR5|G7KBR5_MEDTR AP-3 complex subunit
beta-2 OS=Medicago truncatula GN=MTR_5g079920 PE=4
SV=1,84.4,0,ADAPTER-RELATED PROTEIN COMPLEX 3, BETA SUBUNIT,AP-3
complex subunit beta; ADAPTER-RELATED PROTEIN C,CUFF.39140.2
         (1128 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g079920.1 | affected traffi cking protein | HC | chr...  1772   0.0  
Medtr4g076210.1 | beta-adaptin-like protein | HC | chr4:29181926...   110   1e-23
Medtr3g109922.1 | beta-adaptin A-like protein | HC | chr3:506893...    72   4e-12

>Medtr5g079920.1 | affected traffi cking protein | HC |
            chr5:34196045-34185426 | 20130731
          Length = 1126

 Score = 1772 bits (4590), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 893/1128 (79%), Positives = 960/1128 (85%), Gaps = 2/1128 (0%)

Query: 1    MFHQFGATAESLSKASTAVFRIGTDAHLYDDPEDVNIAPLLDSKFDSDKCEALKRLLALI 60
            MFHQFGATAESLSKASTAVFRIGTDA LYDDPEDVNIAPLLDS+FDS+KCEALKRLLALI
Sbjct: 1    MFHQFGATAESLSKASTAVFRIGTDAALYDDPEDVNIAPLLDSRFDSEKCEALKRLLALI 60

Query: 61   AQGFDVSNFFPQVVKNVASQSLEXXXXXXXXXXHYAEKRPNEALLSINYFQKDLGDTNPL 120
            AQGFDVSNFFPQVVKNVASQSLE          HYAEKRPNEALLSIN FQKDLGDTNPL
Sbjct: 61   AQGFDVSNFFPQVVKNVASQSLEVKKLVYLYLLHYAEKRPNEALLSINCFQKDLGDTNPL 120

Query: 121  VRAWALRAMAGIRLHAIAPLVLVAVGKCARDPSVYVRKCAANALPKLHDLRMEEHASAIE 180
            VRAWALRAMAGIRLHAIAPLVLVAVGKCARDPSVYVRKCAANALPKLHDLRM+EHA+AIE
Sbjct: 121  VRAWALRAMAGIRLHAIAPLVLVAVGKCARDPSVYVRKCAANALPKLHDLRMDEHATAIE 180

Query: 181  EIVGLLLNDHSPGVVGAAASAFNSVCPNNFLLIGRNYRRLCEILPDVEEWGQIMLIGILL 240
            E+VGLLLNDHSPGVVGAAASAF SVCPNNF LIGRNYR+LCEILPDVEEWGQIMLIGILL
Sbjct: 181  EMVGLLLNDHSPGVVGAAASAFTSVCPNNFSLIGRNYRKLCEILPDVEEWGQIMLIGILL 240

Query: 241  RFVIARHGLVKESIMFSLYNKDGDTLEEDESQVSLREDDGYASEQSVSEFANMIFQCYIE 300
            R+VIARHGLVKESIMFS YNKD   L+EDE  V+L++D GYA+E++VSE  +MIFQCYIE
Sbjct: 241  RYVIARHGLVKESIMFSSYNKDHGNLDEDEHDVTLKKDAGYATEKTVSELTHMIFQCYIE 300

Query: 301  GPDEYLSRSSSTSRVAPKLDVSQYTSCSDEVVKILLQCTSPLFWSNNSAVVLSAAGVHWI 360
            GPDEYLSRSSST ++APKLD S YTSCS+EVV+ILLQCTSPL WS+NSAVVL+AAGVHWI
Sbjct: 301  GPDEYLSRSSSTIKIAPKLDESLYTSCSNEVVRILLQCTSPLLWSHNSAVVLAAAGVHWI 360

Query: 361  MASKENVKRIVKPLLFVQRSSYASRYVVLCNIQVFAKAMPSLFAPHYQDFFICSSDSYQI 420
            MA KE+VKRIVKPLLFV RSS ASRYVVLCNIQVFAKAMPSLFAPHY+D FI S DSYQI
Sbjct: 361  MAPKEDVKRIVKPLLFVLRSSPASRYVVLCNIQVFAKAMPSLFAPHYEDLFIYSVDSYQI 420

Query: 421  KALKLEILSSIATDSSVPLILKEFQDYIRDPDRRFAADTIAAIGLCAQRLSKMATTCLDG 480
            KALKL+ILS IA+DSS+  ILKEFQDYIRDPDRRFAADT+AAIGLCAQRL KMAT CL+G
Sbjct: 421  KALKLDILSIIASDSSISFILKEFQDYIRDPDRRFAADTVAAIGLCAQRLPKMATACLEG 480

Query: 481  LLTLIRQDFLCGEIRSLDGEEGVLXXXXXXXXXXXKLEPPSYEKVIIQLVRSLDTIKVPA 540
            LL LIRQ+FLCGEIRSLDGEEGVL           KLEPPSYEKVIIQLVRSLDTIKVPA
Sbjct: 481  LLALIRQEFLCGEIRSLDGEEGVLIQAIMSIISIIKLEPPSYEKVIIQLVRSLDTIKVPA 540

Query: 541  GRAMIIWMLGEYCSLGEIIPRMLSTVLKYLAWCFASEALETKLQILNTTAKVLLYIKGED 600
             RAMI+W+LGEYCSLGE+IPRMLSTVLKYLAWCF SE LETKLQILNT  KV L IKGED
Sbjct: 541  ARAMIVWLLGEYCSLGEMIPRMLSTVLKYLAWCFTSEGLETKLQILNTITKVSLCIKGED 600

Query: 601  SWTLRKIWSYVIELAECDQNYDIRDRSRVLKKLFSSSLEFQNAEENSKSQKRDQSCVLSE 660
            SWTLRKIW+YVIELAE D NYDIRDRSR LKKL SS+LE QN EE +   ++DQS VL+E
Sbjct: 601  SWTLRKIWTYVIELAERDLNYDIRDRSRFLKKLLSSNLESQNVEEENSESRKDQSSVLAE 660

Query: 661  CIFGGQTKSVTVPSEPINYRFYLPGSLSQLVFHAAPGYEPLPKPCSLPYIDLDQYDGAAX 720
            CIFGGQTK+VTVPSEPIN RFYLPGSLSQLVFHAAPGYEPLPKPCSLPYI  DQYDGA  
Sbjct: 661  CIFGGQTKTVTVPSEPINDRFYLPGSLSQLVFHAAPGYEPLPKPCSLPYI--DQYDGAVN 718

Query: 721  XXXXXXXXXXXXXXXXXXNAXXXXXXXXXXXXXXXXXXXXTMPGNGGNNNADLLIQISDP 780
                              NA                    T+ G+ G+NN D LIQIS+ 
Sbjct: 719  SDSEEVDDPGSSGSSDDENASDYSSEQSISGSSEGSGSNETVSGDEGDNNDDPLIQISET 778

Query: 781  GNVLENQNGGAHSGTSGLRDLMSTKSLESWLDEAPGSSKSREVEHSRVQRSSARITISNI 840
             NV ENQNGG HSG+SG  DLMSTKSLESWLDE   SSK  E E S+V++SSARITI +I
Sbjct: 779  SNVNENQNGGDHSGSSGFNDLMSTKSLESWLDEPSKSSKGSETEQSQVRKSSARITIGDI 838

Query: 841  GSRVKPKCYILLDPANGNGLKVNYSFLSETPSISSHLVCLELLFENCSLEPMLDIVLIDE 900
            GSRVKPKCY LLDPANG GL VNYSF SET SISSHLVCLE+LFENCSLEPM DIVL+DE
Sbjct: 839  GSRVKPKCYTLLDPANGKGLMVNYSFSSETSSISSHLVCLEVLFENCSLEPMFDIVLLDE 898

Query: 901  XXXXXXXXXXXXXPATENTLKFNIDKPAVVSMEDILSLEPGQIAKRTLLARFHHHLLPLK 960
                          A ENTLK ++DKPA+VSME I SLEP Q AKRTLL RFHHHLLPLK
Sbjct: 899  DSSKSADSTDQISQAAENTLKSHVDKPALVSMEAISSLEPSQKAKRTLLVRFHHHLLPLK 958

Query: 961  LSLFCNDNRFPVKLRPDIGYFVKPLPISNEAFRDKESRLPGMFEYVRSCTFTDHILELNK 1020
            L+LFCNDN+FPVKLRPDIGYFVKPLPI+ EAF +KES LPGMFEYVRSCTF DHIL+LNK
Sbjct: 959  LALFCNDNKFPVKLRPDIGYFVKPLPINIEAFIEKESHLPGMFEYVRSCTFNDHILKLNK 1018

Query: 1021 DNNSLTEDKFLVICETLAIKMLSNANLSIVSVDMPVASNLDDASGLCLRFCSEILSNSMP 1080
            ++NSLTED FLVICE+LA+KMLSNANLS+VSVD+PVASNLDDASGLCLRF SEILSNSMP
Sbjct: 1019 ESNSLTEDTFLVICESLALKMLSNANLSLVSVDLPVASNLDDASGLCLRFSSEILSNSMP 1078

Query: 1081 CLITVTVEGKCSDPLTASVKVNCEDTVFGLNFLNRVVNFLVEPYVALS 1128
            CLITVT+EGKCSDPL  SVKVNCE+TVFGLNFLNR+VNFL EP V  S
Sbjct: 1079 CLITVTIEGKCSDPLITSVKVNCEETVFGLNFLNRIVNFLAEPPVTHS 1126


>Medtr4g076210.1 | beta-adaptin-like protein | HC |
           chr4:29181926-29190719 | 20130731
          Length = 896

 Score =  110 bits (274), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 152/330 (46%), Gaps = 31/330 (9%)

Query: 321 VSQYTSCSDEVVKILLQCTSPLFWSNNSAVVLSAAGVHWIMASKENV----------KRI 370
           +S+Y +      + +++  +P     N AVVLSA  V  I+   E +          K++
Sbjct: 227 LSRYKAADAREAENIVERVTPRLQHANCAVVLSA--VKMILQQMELITSTDVVRNLCKKM 284

Query: 371 VKPLLFVQRSSYASRYVVLCNIQVFAKAMPSLFAPHYQDFFICSSDSYQIKALKLEILSS 430
             PL+ +  +    +YV L NI +  +  P++ A   + FF   +D   +K  KLEI+  
Sbjct: 285 APPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIK 344

Query: 431 IATDSSVPLILKEFQDYIRDPDRRFAADTIAAIGLCAQRLSKMATTCLDGLLTLIRQDFL 490
           +A+D ++  +L EF++Y  + D  F    + AIG CA +L + A  C+  LL LI+    
Sbjct: 345 LASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKV- 403

Query: 491 CGEIRSLDGEEGVLXXXXXXXXXXXKLEPPSYEKVIIQLVRSLDTIKVPAGRAMIIWMLG 550
                       V+           +  P +YE +I  L  SLDT+  P  +A +IW++G
Sbjct: 404 ----------NYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIG 453

Query: 551 EYCSLGEIIPRMLSTVLKYLAWCFASEALETKLQILNTTAKVLLYIKGEDSWTLRKIWSY 610
           EY    +    +L + L+     F  E    +LQ+L  T K+ L    E    + ++   
Sbjct: 454 EYAERIDNADELLESFLE----SFPEEPALVQLQLLTATVKLFLKKPTEGPQQMIQV--- 506

Query: 611 VIELAECD-QNYDIRDRSRVLKKLFSSSLE 639
           V+  A  +  N D+RDR+ +  +L S+  E
Sbjct: 507 VLNNATMETDNPDLRDRAYIYWRLLSTDPE 536



 Score =  101 bits (251), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 115/211 (54%), Gaps = 7/211 (3%)

Query: 41  LDSKFDSDKCEALKRLLALIAQGFDVSNFFPQVVKNVASQSLEXXXXXXXXXXHYAEKRP 100
           L+S++   + +A+K+++A +  G DVS+ F  VV  + +++LE          +YA+ +P
Sbjct: 24  LNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQP 83

Query: 101 NEALLSINYFQKDLGDTNPLVRAWALRAMAGIRLHAIAPLVLVAVGKCARDPSVYVRKCA 160
           + A+L++N F KD  D NPL+RA A+R M  IR+  I   +   + +C +D   YVRK A
Sbjct: 84  DLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTA 143

Query: 161 ANALPKLHDLRME--EHASAIEEIVGLLLNDHSPGVVGAAASAFNSVCPNN----FLLIG 214
           A  + KL+D+  E  E    +E +   L++D++P VV  A +A   +  N+    F +  
Sbjct: 144 AICVAKLYDINAELVEDRGFLESLKD-LISDNNPMVVANAVAALAEIQDNSTRPIFEITS 202

Query: 215 RNYRRLCEILPDVEEWGQIMLIGILLRFVIA 245
               +L   L +  EWGQ+ ++  L R+  A
Sbjct: 203 HTLSKLLTALNECTEWGQVFILDALSRYKAA 233


>Medtr3g109922.1 | beta-adaptin A-like protein | HC |
           chr3:50689381-50699624 | 20130731
          Length = 844

 Score = 71.6 bits (174), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 81/162 (50%), Gaps = 2/162 (1%)

Query: 46  DSDKCEALKRLLALIAQGFDVSNFFPQVVKNVASQSLEXXXXXXXXXXHYAEKRPNEALL 105
           D  K +  K++++ +  G DVS+ F ++V   A+  +           +YA+  P+ ALL
Sbjct: 42  DDSKRDLYKKVISNMTIGIDVSSLFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALL 101

Query: 106 SINYFQKDLGDTNPLVRAWALRAMAGIRLHAIAPLVLVAVGKCARDPSVYVRKCAANALP 165
           +IN+ Q+D  D +P++R  ALR++  +R+  +   ++  +G   +D + YVR  A   + 
Sbjct: 102 TINFLQRDCKDQDPMIRGLALRSLCSLRVANLVEYLVGPLGSGLKDNNSYVRTVAVIGVL 161

Query: 166 KLHDLRMEE--HASAIEEIVGLLLNDHSPGVVGAAASAFNSV 205
           KL+ +       A   E +  L+LND    VV    SA   +
Sbjct: 162 KLYHISASTCIDADFPETLKHLMLNDQDTQVVANCLSALQEI 203



 Score = 64.3 bits (155), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 125/288 (43%), Gaps = 28/288 (9%)

Query: 350 VVLSAAGVHWIMASKENVKRIVKPLLF-VQRSSYASRYVVLCNIQVFAKAMPSLFAPHYQ 408
           + LS A VH     ++  +RI  PLL  V   S    Y +L ++ +     P +F+  Y+
Sbjct: 289 LTLSMADVH-----QQVYERIKAPLLTQVSSGSPEQSYAILSHLHLLVMRAPYIFSLDYK 343

Query: 409 DFFICSSDSYQIKALKLEILSSIATDSSVPLILKEFQDYIRDPDRRFAADTIAAIGLCAQ 468
            F+   ++   +K LKLE+L+++A +S+   I+ E  +Y  + D   A ++I A+G  A 
Sbjct: 344 HFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIAL 403

Query: 469 RLSKMATTCLDGLLTLIRQDFLCGEIRSLDGEEGVLXXXXXXXXXXXKLEPPSYEKVIIQ 528
           +   +    +D LL      FL  E   +  E  VL               P + +  I 
Sbjct: 404 QQYDV-NAIVDRLL-----QFLEMEKDYVTSEALVLVKDLLRKY-------PQWSQDCIA 450

Query: 529 LVRSL--DTIKVPAGRAMIIWMLGEYCSLGEIIPRMLSTVLKYLAWCFASEALETKLQIL 586
           +V ++  + ++ P  +A +IWMLGEY       P +L ++++   W     A E +L +L
Sbjct: 451 VVGNISSNNVQEPKAKAALIWMLGEYSQDMHDAPYVLESLVE--NWDEEHSA-EVRLHLL 507

Query: 587 NTTAKVLLYIKGEDSWTLRKIWSYVIELAECDQNYDIRDRSRVLKKLF 634
               K       E     +K     +     D + D+ DR+    +L 
Sbjct: 508 TAVMKCFFKRPPE----TQKALGAALAAGLADFHQDVHDRALFYYRLL 551