Miyakogusa Predicted Gene

Lj2g3v2586520.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2586520.1 Non Characterized Hit- tr|B4FND7|B4FND7_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,51.14,3e-19,seg,NULL,CUFF.39134.1
         (178 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g079870.2 | RNA recognition motif, a.k.a. RRM, RBD protein...    72   2e-13
Medtr5g079870.4 | RNA recognition motif, a.k.a. RRM, RBD protein...    72   2e-13
Medtr5g079870.1 | RNA recognition motif, a.k.a. RRM, RBD protein...    72   3e-13
Medtr5g079870.3 | RNA recognition motif, a.k.a. RRM, RBD protein...    62   4e-10

>Medtr5g079870.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr5:34159814-34164480 | 20130731
          Length = 210

 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 44/71 (61%), Gaps = 3/71 (4%)

Query: 84  DYSVSPRRQAEHXXXXXXXXXXXXXXXERDGDHKRRSYSPP-YDNGADQNQGNGYTEKSV 142
           DYSVSPRR AE                ERD DHKRRSYSP  Y N  DQNQ NGY EKSV
Sbjct: 119 DYSVSPRRHAE--RPRSPRSPPRSPPVERDADHKRRSYSPLGYGNDVDQNQSNGYAEKSV 176

Query: 143 YKSEADRGQLK 153
           YKSEADRG  K
Sbjct: 177 YKSEADRGPWK 187



 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/34 (85%), Positives = 32/34 (94%)

Query: 1  MNRQIFAGREITVVVASETRKRPEEMRHRTRSSR 34
          M+RQIFAGREI+VVVA+ETRKRPEEMRHRT  SR
Sbjct: 32 MDRQIFAGREISVVVAAETRKRPEEMRHRTSRSR 65


>Medtr5g079870.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr5:34159851-34164480 | 20130731
          Length = 210

 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 44/71 (61%), Gaps = 3/71 (4%)

Query: 84  DYSVSPRRQAEHXXXXXXXXXXXXXXXERDGDHKRRSYSPP-YDNGADQNQGNGYTEKSV 142
           DYSVSPRR AE                ERD DHKRRSYSP  Y N  DQNQ NGY EKSV
Sbjct: 119 DYSVSPRRHAE--RPRSPRSPPRSPPVERDADHKRRSYSPLGYGNDVDQNQSNGYAEKSV 176

Query: 143 YKSEADRGQLK 153
           YKSEADRG  K
Sbjct: 177 YKSEADRGPWK 187



 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/34 (85%), Positives = 32/34 (94%)

Query: 1  MNRQIFAGREITVVVASETRKRPEEMRHRTRSSR 34
          M+RQIFAGREI+VVVA+ETRKRPEEMRHRT  SR
Sbjct: 32 MDRQIFAGREISVVVAAETRKRPEEMRHRTSRSR 65


>Medtr5g079870.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr5:34159814-34164480 | 20130731
          Length = 286

 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 44/71 (61%), Gaps = 3/71 (4%)

Query: 84  DYSVSPRRQAEHXXXXXXXXXXXXXXXERDGDHKRRSYSPP-YDNGADQNQGNGYTEKSV 142
           DYSVSPRR AE                ERD DHKRRSYSP  Y N  DQNQ NGY EKSV
Sbjct: 195 DYSVSPRRHAERPRSPRSPPRSPPV--ERDADHKRRSYSPLGYGNDVDQNQSNGYAEKSV 252

Query: 143 YKSEADRGQLK 153
           YKSEADRG  K
Sbjct: 253 YKSEADRGPWK 263



 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/34 (85%), Positives = 32/34 (94%)

Query: 1   MNRQIFAGREITVVVASETRKRPEEMRHRTRSSR 34
           M+RQIFAGREI+VVVA+ETRKRPEEMRHRT  SR
Sbjct: 108 MDRQIFAGREISVVVAAETRKRPEEMRHRTSRSR 141


>Medtr5g079870.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr5:34159851-34164480 | 20130731
          Length = 249

 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/34 (85%), Positives = 32/34 (94%)

Query: 1   MNRQIFAGREITVVVASETRKRPEEMRHRTRSSR 34
           M+RQIFAGREI+VVVA+ETRKRPEEMRHRT  SR
Sbjct: 108 MDRQIFAGREISVVVAAETRKRPEEMRHRTSRSR 141



 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 84  DYSVSPRRQAEHXXXXXXXXXXXXXXXERDGDHKRRSYSPP-YDNGADQNQGNGYTE 139
           DYSVSPRR AE                ERD DHKRRSYSP  Y N  DQNQ NGY E
Sbjct: 195 DYSVSPRRHAE--RPRSPRSPPRSPPVERDADHKRRSYSPLGYGNDVDQNQSNGYAE 249