Miyakogusa Predicted Gene

Lj2g3v2585500.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2585500.1 tr|G7KBR0|G7KBR0_MEDTR Ribosomal RNA large
subunit methyltransferase N OS=Medicago truncatula
GN=MTR,84.28,0,Radical_SAM,Radical SAM; Fer4_14,NULL; no
description,Radical SAM, alpha/beta horseshoe; Radical
SAM,CUFF.39122.1
         (406 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g079860.1 | 23S rRNA m2A2503 methyltransferase | HC | chr5...   684   0.0  
Medtr5g005050.1 | 23S rRNA m2A2503 methyltransferase | HC | chr5...   179   5e-45
Medtr8g064490.1 | 23S rRNA m2A2503 methyltransferase | HC | chr8...   176   5e-44
Medtr5g005050.2 | 23S rRNA m2A2503 methyltransferase | HC | chr5...   143   4e-34

>Medtr5g079860.1 | 23S rRNA m2A2503 methyltransferase | HC |
           chr5:34153185-34158285 | 20130731
          Length = 432

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/378 (85%), Positives = 356/378 (94%), Gaps = 2/378 (0%)

Query: 28  AAASPRT-ISQPQVLLGLSEQDLRQLALDLGQQGFRGRQLYHLIYKRKIREVQEFIQLPQ 86
            ++SPRT I Q QVLLGLSE +L++LALD GQQGFRG+QLYHLIYKRK++++QEF Q+PQ
Sbjct: 30  TSSSPRTTIPQSQVLLGLSETELQKLALDFGQQGFRGKQLYHLIYKRKVKDIQEFTQVPQ 89

Query: 87  AFRNDLEEAGWKVGRSPIFKSVTAADGTVKLLLKLEDNRLIETVGIPVDDDKGSGRLTAC 146
           AFRN+LEEAGWKVGRSPIF +V A DGTVKLLLKLEDNRLIETVGIPV+D+KGS RLTAC
Sbjct: 90  AFRNELEEAGWKVGRSPIFNTVVATDGTVKLLLKLEDNRLIETVGIPVEDEKGSVRLTAC 149

Query: 147 VSSQVGCPLRCSFCATGKGGFSRNLQKHEIVEQVLAIEEVFKRRVTNVVFMGMGEPMLNL 206
           VSSQVGCPL+CSFCATGKGGFSRNL+ HEIVEQVLAIEEVFKRRVTNVVFMGMGEPMLNL
Sbjct: 150 VSSQVGCPLKCSFCATGKGGFSRNLRSHEIVEQVLAIEEVFKRRVTNVVFMGMGEPMLNL 209

Query: 207 KAVLGAHQCLNKDVQIGQRMMTISTVGVPNTMKKLATHKLQSTLAVSLHAPNQKLRETIV 266
           KAVL AH+CLNKD+QIGQRMMTISTVGVPNT+KKLATHKLQSTLAVSLHAPNQKLRETIV
Sbjct: 210 KAVLEAHRCLNKDIQIGQRMMTISTVGVPNTIKKLATHKLQSTLAVSLHAPNQKLRETIV 269

Query: 267 PSAKSYPLEALMKDCSEYFRETNRRVSFEYALLAGINDSVDHAVELAKLLREWGSGYHVN 326
           PSAKSYPL+ALMKDC EYF ET+RRVSFEYALLAGINDSVD+AVELAKLL E+GSGYHVN
Sbjct: 270 PSAKSYPLDALMKDCKEYFHETSRRVSFEYALLAGINDSVDNAVELAKLLHEYGSGYHVN 329

Query: 327 LIPFNPIEGSEYKRPYRKAVKAFSDALESSKITVSVRQTRGLDANAACGQLRNEFQKAPM 386
           LIPFNPIEGSE++RPYRKAV+AF +ALESSKIT SVRQTRGLDANAACGQLRN FQK P+
Sbjct: 330 LIPFNPIEGSEFRRPYRKAVQAFVNALESSKITTSVRQTRGLDANAACGQLRNNFQKTPL 389

Query: 387 ATDSD-NLESQLPNMELA 403
            T+SD NLESQLPNM+LA
Sbjct: 390 VTESDNNLESQLPNMDLA 407


>Medtr5g005050.1 | 23S rRNA m2A2503 methyltransferase | HC |
           chr5:304658-307368 | 20130731
          Length = 380

 Score =  179 bits (453), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 110/276 (39%), Positives = 156/276 (56%), Gaps = 16/276 (5%)

Query: 114 TVKLLLKLEDNRLIETVGIPVDDD---------KGSGRLTACVSSQVGCPLRCSFCATGK 164
           T KL++KL++   +E V +  D            G  R T C+SSQVGC + C FCATG 
Sbjct: 86  TSKLVIKLQNGEFVEAVIMRYDTRLGKYGGEPRPGGLRATLCISSQVGCKMGCKFCATGS 145

Query: 165 GGFSRNLQKHEIVEQVLAIEEVFKRRVTNVVFMGMGEPMLNLKAVLGAHQCLNKD-VQIG 223
            GF  NL   EIVEQ++         + NVVFMGMGEP+ N  AV+ + + ++    Q+ 
Sbjct: 146 MGFKSNLSSGEIVEQLVHASAF--AHIRNVVFMGMGEPLNNYSAVVESVRIMSGSPFQLS 203

Query: 224 QRMMTISTVGVPNTMKKLATHKLQSTLAVSLHAPNQKLRETIVPSAKSYPLEALMKDCSE 283
            + +T+STVG+ +++ KL        LAVSLHAP Q +R  I+P+A+++PLE LM    E
Sbjct: 204 LKRITVSTVGIIHSINKLHNDVPGLNLAVSLHAPAQDIRCQIMPAARAFPLEKLMASLQE 263

Query: 284 YFRETNRRVSFEYALLAGINDSVDHAVELAKLLREWGSGYHVNLIPFNPIEG-SEYKRPY 342
           Y R++ +++  EY +L G+ND   HA  L KLL  +     VNLIPFN I   S++K   
Sbjct: 264 YQRKSLQKILIEYIMLDGVNDEEQHAHLLGKLLETF--EVVVNLIPFNSIGTLSQFKSTS 321

Query: 343 RKAVKAFSDALESS-KITVSVRQTRGLDANAACGQL 377
            + V  F   L  +  I  +VR+  G D + ACGQL
Sbjct: 322 EQKVSKFQKILRGTYNIRTTVRKQMGEDISGACGQL 357


>Medtr8g064490.1 | 23S rRNA m2A2503 methyltransferase | HC |
           chr8:27050679-27043455 | 20130731
          Length = 449

 Score =  176 bits (445), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 126/348 (36%), Positives = 187/348 (53%), Gaps = 20/348 (5%)

Query: 40  VLLGLSEQDLRQLALDLGQQGFRGRQLYHLIYKRKI--REVQEFIQLPQAFRNDL-EEAG 96
           +L G++  +L +     G +  +   L+  +Y   I      E   L + F+  L E A 
Sbjct: 84  LLKGMTYSELEKWVQSHGYRPGQAMMLWKRMYGNNIWAHHTDELEGLKKDFKQMLSEHAD 143

Query: 97  WKVGRSPIFKSVTAA-DGTVKLLLKLEDNRLIETVGIPVDDDKGSGRLTACVSSQVGCPL 155
           +K   +   K + AA DGT K+L  L+D  +IETV IP D    +GR T CVSSQVGC +
Sbjct: 144 FK---ALAVKEIHAASDGTRKILFTLDDGLVIETVVIPCD----TGRTTVCVSSQVGCAM 196

Query: 156 RCSFCATGKGGFSRNLQKHEIVEQVLAIEEVFKRR---VTNVVFMGMGEPMLNLKAVLGA 212
            C FC TG+ G  R+L   EIVEQ +    +F      +TNVVFMGMGEP+ N+  V+ A
Sbjct: 197 NCQFCYTGRMGLKRHLTAAEIVEQAVFARRLFTSEIGSITNVVFMGMGEPLHNIDNVIKA 256

Query: 213 HQCLNKD--VQIGQRMMTISTVGVPNTMKKLATHKLQSTLAVSLHAPNQKLRETIVPSAK 270
              +  D  +    R +T+ST G+   +++   H+   TLAVSL+A   ++R  I+P  +
Sbjct: 257 ADIMVHDQGLHFSPRKVTVSTSGLVPQLRRFL-HESNCTLAVSLNATTDEVRNWIMPINR 315

Query: 271 SYPLEALMKDCSEYFRETNR-RVSFEYALLAGINDSVDHAVELAKLLREWGSGYHVNLIP 329
            Y L+ L++   E     ++ +V FEY +L GINDS + A  L +L++  G    +NLI 
Sbjct: 316 KYKLDLLLETLREELSFKHKYKVLFEYVMLEGINDSNEDAKRLIELVK--GIPCKINLIS 373

Query: 330 FNPIEGSEYKRPYRKAVKAFSDALESSKITVSVRQTRGLDANAACGQL 377
           FNP  GS ++    + +  F + L  +   V +R +RG D  AACGQL
Sbjct: 374 FNPHSGSFFRPTKEERMIEFRNMLAEAGCVVLLRPSRGDDQMAACGQL 421


>Medtr5g005050.2 | 23S rRNA m2A2503 methyltransferase | HC |
           chr5:304658-307368 | 20130731
          Length = 345

 Score =  143 bits (360), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 98/275 (35%), Positives = 134/275 (48%), Gaps = 49/275 (17%)

Query: 114 TVKLLLKLEDNRLIETVGIPVDDD---------KGSGRLTACVSSQVGCPLRCSFCATGK 164
           T KL++KL++   +E V +  D            G  R T C+SSQVGC + C FCATG 
Sbjct: 86  TSKLVIKLQNGEFVEAVIMRYDTRLGKYGGEPRPGGLRATLCISSQVGCKMGCKFCATGS 145

Query: 165 GGFSRNLQKHEIVEQVLAIEEVFKRRVTNVVFMGMGEPMLNLKAVLGAHQCLNKDVQIGQ 224
            GF  NL   EIVEQ++         + NVVFM                           
Sbjct: 146 MGFKSNLSSGEIVEQLVHASAF--AHIRNVVFM--------------------------- 176

Query: 225 RMMTISTVGVPNTMKKLATHKLQSTLAVSLHAPNQKLRETIVPSAKSYPLEALMKDCSEY 284
                  VG+ +++ KL        LAVSLHAP Q +R  I+P+A+++PLE LM    EY
Sbjct: 177 -------VGIIHSINKLHNDVPGLNLAVSLHAPAQDIRCQIMPAARAFPLEKLMASLQEY 229

Query: 285 FRETNRRVSFEYALLAGINDSVDHAVELAKLLREWGSGYHVNLIPFNPIEG-SEYKRPYR 343
            R++ +++  EY +L G+ND   HA  L KLL  +     VNLIPFN I   S++K    
Sbjct: 230 QRKSLQKILIEYIMLDGVNDEEQHAHLLGKLLETF--EVVVNLIPFNSIGTLSQFKSTSE 287

Query: 344 KAVKAFSDALESS-KITVSVRQTRGLDANAACGQL 377
           + V  F   L  +  I  +VR+  G D + ACGQL
Sbjct: 288 QKVSKFQKILRGTYNIRTTVRKQMGEDISGACGQL 322