Miyakogusa Predicted Gene

Lj2g3v2574440.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2574440.1 Non Characterized Hit- tr|I1JHY7|I1JHY7_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,87.08,0,AAR2,A1
cistron-splicing factor, AAR2; SUBFAMILY NOT NAMED,NULL; A1 CISTRON
SPLICING FACTOR AAR2-REL,CUFF.39117.1
         (392 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g079770.1 | A1 cistron-splicing factor AAR2 | HC | chr5:34...   652   0.0  

>Medtr5g079770.1 | A1 cistron-splicing factor AAR2 | HC |
           chr5:34112477-34120969 | 20130731
          Length = 391

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/387 (80%), Positives = 341/387 (88%)

Query: 1   MDSSTALELVKHGVSLLFLDVPQYTLIAIDTQMFSVGPAFKGIKMIPPGTHFVYYSSSTR 60
           MDS TALELVK+GV+LLFLDVPQYTL+AIDTQ+FSVGP FKGIKMIPPGTHFVYYSSSTR
Sbjct: 1   MDSQTALELVKNGVTLLFLDVPQYTLVAIDTQVFSVGPTFKGIKMIPPGTHFVYYSSSTR 60

Query: 61  DGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEDDEERYTQAVRNLEFDKQLGPYN 120
           DGKEFSP+IGFFIDAGPSEVIVRKWDQQEERLVKVSE+++ERY  AV+N+EFD+QLGPYN
Sbjct: 61  DGKEFSPMIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEDERYRLAVKNMEFDRQLGPYN 120

Query: 121 LSHYEDWKRLSNFITKSIIERLEPIGGEITVECENEMVKSTPKVPMEKALDEQLKASTSA 180
           LSHYEDWKRLS+FITKSIIERLEPIGGE++VECEN+M ++ PK PMEKALD QLK   SA
Sbjct: 121 LSHYEDWKRLSDFITKSIIERLEPIGGEVSVECENDMFRNAPKTPMEKALDTQLKVDNSA 180

Query: 181 TSVGRSQRKGCYYTTIPRVVKCKGISGQELTSLNLDKTQLLETLLAKDYGGSEDLLLGEL 240
           TSVG+ QRKGCYYT+IPRVVKCKGISGQELTSLNLDKTQLLETLL KDYGGSEDLLLGEL
Sbjct: 181 TSVGKLQRKGCYYTSIPRVVKCKGISGQELTSLNLDKTQLLETLLVKDYGGSEDLLLGEL 240

Query: 241 QFAFIAFLMGQSLEAFLQWKSLVSLLLGCTEAPFRTRTQLFTKFIRVIFYQLKYGLQKDR 300
           QFAFIA +MGQSLEAFLQWKSLVSLLLGCTEAPF TRT+LFTKFI+VI+YQLKYGLQKDR
Sbjct: 241 QFAFIALMMGQSLEAFLQWKSLVSLLLGCTEAPFHTRTRLFTKFIKVIYYQLKYGLQKDR 300

Query: 301 VDETGPAXXXXXXXXXXXXXHHLCKDFFXXXXXXXXXXXXXXKWTRKFKELLESNLGWKF 360
            D TGP              HH CK+FF              KWTRKFK+LLESNLGW+F
Sbjct: 301 KDNTGPLLLDDSWFSTDSFLHHHCKEFFSLVLDGSVIDGDLLKWTRKFKKLLESNLGWEF 360

Query: 361 QQNSAVDGIYFEDNDEFAPVVEMLDDE 387
           QQN+AVDG+YF++NDEFAPVVEMLDDE
Sbjct: 361 QQNNAVDGLYFDENDEFAPVVEMLDDE 387